Wall clock time and date at job start Wed Apr 1 2020 02:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40088 * 126.03908 * 2 1 4 4 C 1.30840 * 108.20536 * 180.02562 * 3 2 1 5 5 C 1.39870 * 108.20261 * 359.78045 * 4 3 2 6 6 C 1.34949 * 126.03886 * 180.02562 * 2 1 3 7 7 C 1.50702 * 126.12527 * 359.93166 * 6 2 1 8 8 H 1.08993 * 110.42642 * 297.32300 * 7 6 2 9 9 C 1.54912 * 110.36936 * 59.63147 * 7 6 2 10 10 C 1.55140 * 101.65379 * 155.89514 * 9 7 6 11 11 C 1.54321 * 103.01742 * 324.34957 * 10 9 7 12 12 N 1.47435 * 107.23651 * 22.28236 * 11 10 9 13 13 C 1.46903 * 111.00477 * 123.25530 * 12 11 10 14 14 C 1.50705 * 109.46806 * 69.87249 * 13 12 11 15 15 O 1.21280 * 120.00059 * 0.02562 * 14 13 12 16 16 N 1.34773 * 119.99746 * 179.97438 * 14 13 12 17 17 C 1.46504 * 119.99970 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.47207 * 270.00763 * 17 16 14 19 19 H 1.07995 * 120.00038 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99575 * 180.02562 * 18 17 16 21 21 N 1.31521 * 119.99639 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00653 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.46875 * 89.99915 * 22 20 18 24 24 H 1.48489 * 109.47476 * 210.00368 * 22 20 18 25 25 H 1.48501 * 109.46661 * 330.00514 * 22 20 18 26 26 C 1.46500 * 120.00149 * 0.02562 * 16 14 13 27 27 C 1.53006 * 109.46998 * 89.99434 * 26 16 14 28 28 C 1.47203 * 109.46872 * 179.97438 * 27 26 16 29 29 N 8.58032 * 98.39077 * 134.17441 * 2 1 3 30 30 H 1.09001 * 109.46956 * 269.97398 * 1 2 3 31 31 H 1.08996 * 109.47256 * 29.97376 * 1 2 3 32 32 H 1.08992 * 109.47371 * 149.97506 * 1 2 3 33 33 H 1.07999 * 125.89044 * 180.02562 * 4 3 2 34 34 H 1.07996 * 126.03845 * 180.23642 * 5 4 3 35 35 H 1.09009 * 110.99117 * 37.80974 * 9 7 6 36 36 H 1.08994 * 111.02525 * 274.00644 * 9 7 6 37 37 H 1.09000 * 110.70884 * 205.96616 * 10 9 7 38 38 H 1.08997 * 110.70516 * 82.72581 * 10 9 7 39 39 H 1.08997 * 109.88796 * 262.87160 * 11 10 9 40 40 H 1.09009 * 110.02073 * 141.76221 * 11 10 9 41 41 H 1.09002 * 109.46727 * 309.87713 * 13 12 11 42 42 H 1.08999 * 109.47187 * 189.87031 * 13 12 11 43 43 H 1.09003 * 109.46763 * 30.00247 * 17 16 14 44 44 H 1.08995 * 109.47081 * 150.00666 * 17 16 14 45 45 H 0.96999 * 119.99910 * 179.97438 * 21 20 18 46 46 H 1.09000 * 109.47175 * 329.99565 * 26 16 14 47 47 H 1.09001 * 109.47297 * 209.99073 * 26 16 14 48 48 H 1.08993 * 109.46955 * 300.00226 * 27 26 16 49 49 H 1.09000 * 109.47050 * 60.00054 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5347 0.7321 -0.0006 5 6 3.5437 -0.6666 0.0042 6 6 2.2589 -1.0912 -0.0005 7 6 1.7973 -2.5258 0.0003 8 1 1.2354 -2.7441 0.9084 9 6 0.9320 -2.8145 -1.2518 10 6 1.1009 -4.3494 -1.4022 11 6 2.5622 -4.5829 -0.9647 12 7 2.9539 -3.4387 -0.1213 13 6 3.4093 -3.8903 1.2003 14 6 4.7331 -4.5970 1.0610 15 8 5.2467 -4.7126 -0.0315 16 7 5.3465 -5.0995 2.1507 17 6 6.6331 -5.7870 2.0153 18 6 6.3953 -7.2567 1.7818 19 1 5.3867 -7.6404 1.7391 20 6 7.4654 -8.1116 1.6239 21 7 7.2578 -9.3941 1.4197 22 14 9.2100 -7.4482 1.6986 23 1 9.6980 -7.4955 3.1003 24 1 10.0922 -8.2775 0.8390 25 1 9.2266 -6.0439 1.2158 26 6 4.7263 -4.9593 3.4705 27 6 3.8218 -6.1638 3.7395 28 6 3.1991 -6.0232 5.0659 29 7 2.7170 -5.9152 6.0881 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3633 0.8902 -0.5134 32 1 -0.3634 -0.8897 -0.5142 33 1 4.4053 1.3711 -0.0003 34 1 4.4210 -1.2963 0.0086 35 1 1.3220 -2.2914 -2.1250 36 1 -0.1110 -2.5518 -1.0754 37 1 0.9557 -4.6533 -2.4389 38 1 0.4123 -4.8792 -0.7441 39 1 3.2078 -4.6356 -1.8413 40 1 2.6373 -5.5079 -0.3928 41 1 2.6744 -4.5753 1.6233 42 1 3.5246 -3.0292 1.8586 43 1 7.1812 -5.3691 1.1709 44 1 7.2143 -5.6534 2.9277 45 1 8.0107 -9.9956 1.3082 46 1 4.1324 -4.0457 3.4977 47 1 5.5030 -4.9107 4.2337 48 1 3.0452 -6.2125 2.9764 49 1 4.4157 -7.0774 3.7123 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932268801.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:40 Heat of formation + Delta-G solvation = 94.554155 kcal Electronic energy + Delta-G solvation = -30984.121319 eV Core-core repulsion = 26948.978944 eV Total energy + Delta-G solvation = -4035.142375 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.39227 -39.77346 -38.35937 -36.77671 -35.26825 -33.56388 -32.85790 -32.12644 -31.30870 -30.90180 -28.53246 -27.80954 -26.86718 -26.19301 -23.93109 -22.58595 -21.90266 -21.56199 -20.70247 -19.45628 -18.60303 -17.61097 -17.26328 -16.72179 -16.66902 -16.09663 -15.55632 -15.50833 -15.11140 -14.80952 -14.57882 -14.23540 -13.97281 -13.81228 -13.62532 -13.51427 -13.32392 -13.11543 -12.84212 -12.72112 -12.66122 -12.54709 -12.43193 -12.27636 -11.99349 -11.80994 -11.68884 -11.57320 -11.39248 -11.23475 -11.06990 -10.84659 -10.78386 -10.67278 -10.52962 -10.16201 -9.58763 -9.31669 -9.11644 -8.64820 -8.47333 -8.35474 -7.90445 -6.15380 -4.14847 1.81616 2.37731 2.79271 2.89192 2.90098 3.24013 3.26077 3.31538 3.37152 3.41634 3.85938 4.18575 4.33904 4.35318 4.38617 4.42738 4.69754 4.74379 4.86462 4.92045 4.97020 5.05655 5.10774 5.14147 5.16275 5.19976 5.26679 5.32197 5.37063 5.48688 5.52452 5.62144 5.63925 5.76419 5.86163 5.87598 5.93641 6.17344 6.24908 6.26625 6.55140 6.71270 6.79567 6.85072 6.95485 7.01564 7.21369 7.53935 7.65300 7.69272 8.09486 8.38080 8.84226 8.89907 9.45395 10.97233 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.011049 B = 0.003200 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.577931 B = 8749.039250 C = 9384.392703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.376 5.376 3 N -0.304 5.304 4 C 0.041 3.959 5 C -0.239 4.239 6 C 0.093 3.907 7 C 0.136 3.864 8 H 0.071 0.929 9 C -0.123 4.123 10 C -0.142 4.142 11 C 0.054 3.946 12 N -0.496 5.496 13 C 0.028 3.972 14 C 0.513 3.487 15 O -0.510 6.510 16 N -0.596 5.596 17 C 0.215 3.785 18 C -0.531 4.531 19 H 0.078 0.922 20 C 0.075 3.925 21 N -0.895 5.895 22 Si 0.871 3.129 23 H -0.276 1.276 24 H -0.285 1.285 25 H -0.263 1.263 26 C 0.123 3.877 27 C -0.054 4.054 28 C 0.219 3.781 29 N -0.453 5.453 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.181 0.819 34 H 0.155 0.845 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.090 0.910 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.099 0.901 43 H 0.044 0.956 44 H 0.027 0.973 45 H 0.265 0.735 46 H 0.073 0.927 47 H 0.087 0.913 48 H 0.103 0.897 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.084 14.794 -2.382 20.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.160 5.160 3 N -0.125 5.125 4 C -0.144 4.144 5 C -0.268 4.268 6 C -0.035 4.035 7 C 0.026 3.974 8 H 0.088 0.912 9 C -0.161 4.161 10 C -0.181 4.181 11 C -0.073 4.073 12 N -0.220 5.220 13 C -0.103 4.103 14 C 0.298 3.702 15 O -0.383 6.383 16 N -0.329 5.329 17 C 0.095 3.905 18 C -0.570 4.570 19 H 0.096 0.904 20 C -0.128 4.128 21 N -0.533 5.533 22 Si 0.698 3.302 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.187 1.187 26 C -0.003 4.003 27 C -0.095 4.095 28 C -0.099 4.099 29 N -0.130 5.130 30 H 0.089 0.911 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.198 0.802 34 H 0.172 0.828 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.108 0.892 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.117 0.883 43 H 0.062 0.938 44 H 0.045 0.955 45 H 0.075 0.925 46 H 0.091 0.909 47 H 0.105 0.895 48 H 0.121 0.879 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.908 15.981 -1.725 21.923 hybrid contribution 1.022 -1.119 0.200 1.528 sum -13.886 14.862 -1.526 20.397 Atomic orbital electron populations 1.21926 0.75077 1.04440 1.03155 1.48336 1.06124 1.03314 1.58253 1.77334 1.02008 1.07614 1.25550 1.23892 0.95032 0.95510 1.00003 1.21346 0.97011 0.94151 1.14329 1.20726 0.91438 0.89244 1.02048 1.20870 0.90750 0.87262 0.98536 0.91178 1.22808 0.98750 0.97003 0.97568 1.22851 0.97558 0.95054 1.02627 1.22799 0.94093 0.91853 0.98535 1.62865 1.31679 1.15513 1.11957 1.22351 0.96125 1.00124 0.91714 1.20072 0.86117 0.79372 0.84597 1.90702 1.65312 1.56950 1.25367 1.47899 1.23274 1.56534 1.05186 1.19733 0.80118 0.93226 0.97431 1.21305 0.95359 0.89978 1.50310 0.90444 1.24837 0.98972 0.94680 0.94327 1.69882 1.31608 1.03024 1.48821 0.86912 0.85042 0.79882 0.78326 1.20169 1.21059 1.18706 1.21275 0.96669 0.95423 0.86927 1.20007 0.99689 1.04266 0.85565 1.29256 0.93020 0.92745 0.94865 1.81160 1.10236 1.09308 1.12307 0.91073 0.89491 0.89476 0.80224 0.82776 0.90038 0.90630 0.90214 0.91275 0.89217 0.91938 0.91970 0.88341 0.93792 0.95530 0.92523 0.90855 0.89452 0.87898 0.84752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.65 11.24 59.84 0.67 1.32 16 2 N -0.38 -4.14 4.01 -63.89 -0.26 -4.40 16 3 N -0.30 -3.92 12.58 30.62 0.39 -3.54 16 4 C 0.04 0.49 12.03 -17.36 -0.21 0.28 16 5 C -0.24 -3.04 10.14 -40.01 -0.41 -3.45 16 6 C 0.09 1.06 6.22 -82.26 -0.51 0.55 16 7 C 0.14 1.34 2.60 -67.33 -0.18 1.16 16 8 H 0.07 0.60 7.81 -51.93 -0.41 0.20 16 9 C -0.12 -1.00 5.64 -24.59 -0.14 -1.13 16 10 C -0.14 -1.22 6.94 -24.91 -0.17 -1.39 16 11 C 0.05 0.66 5.65 -2.84 -0.02 0.65 16 12 N -0.50 -6.07 3.78 -226.18 -0.86 -6.93 16 13 C 0.03 0.34 3.58 -4.97 -0.02 0.33 16 14 C 0.51 8.67 7.32 -10.98 -0.08 8.59 16 15 O -0.51 -10.91 15.12 5.56 0.08 -10.83 16 16 N -0.60 -10.00 2.46 -175.05 -0.43 -10.43 16 17 C 0.22 4.57 4.27 -5.19 -0.02 4.55 16 18 C -0.53 -13.37 9.47 -34.44 -0.33 -13.69 16 19 H 0.08 2.07 7.66 -52.49 -0.40 1.67 16 20 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 21 N -0.90 -25.73 13.96 55.43 0.77 -24.96 16 22 Si 0.87 20.19 27.47 -169.99 -4.67 15.52 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.26 -5.94 6.54 56.52 0.37 -5.57 16 26 C 0.12 1.51 5.21 -4.04 -0.02 1.49 16 27 C -0.05 -0.64 6.03 -29.51 -0.18 -0.82 16 28 C 0.22 2.83 15.43 -20.78 -0.32 2.51 16 29 N -0.45 -6.91 18.53 42.13 0.78 -6.13 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.42 5.21 -51.93 -0.27 0.15 16 33 H 0.18 1.64 8.06 -52.49 -0.42 1.22 16 34 H 0.15 2.12 7.83 -52.49 -0.41 1.71 16 35 H 0.08 0.76 8.05 -51.92 -0.42 0.34 16 36 H 0.08 0.43 6.35 -51.93 -0.33 0.10 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.06 0.83 7.31 -51.92 -0.38 0.45 16 41 H 0.06 0.64 7.01 -51.93 -0.36 0.27 16 42 H 0.10 1.06 7.33 -51.93 -0.38 0.68 16 43 H 0.04 1.04 6.48 -51.93 -0.34 0.71 16 44 H 0.03 0.53 7.32 -51.93 -0.38 0.15 16 45 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 46 H 0.07 0.70 6.44 -51.93 -0.33 0.37 16 47 H 0.09 1.03 7.89 -51.93 -0.41 0.62 16 48 H 0.10 1.07 7.22 -51.93 -0.38 0.70 16 49 H 0.13 1.93 7.25 -51.93 -0.38 1.56 16 LS Contribution 400.15 15.07 6.03 6.03 Total: -1.00 -34.02 400.15 -7.45 -41.48 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -7.28 Total: 1.34 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -2.02 Total: 2.84 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: 0.40 Total: -56.38 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.08 Total: -10.83 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.67 Total: 15.52 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.02 -7.45 -41.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932268801.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.033 kcal (2) G-P(sol) polarization free energy of solvation -34.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds