Wall clock time and date at job start Wed Apr 1 2020 02:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40088 * 126.03908 * 2 1 4 4 C 1.30840 * 108.20536 * 180.02562 * 3 2 1 5 5 C 1.39870 * 108.20261 * 359.78045 * 4 3 2 6 6 C 1.34949 * 126.03886 * 180.02562 * 2 1 3 7 7 C 1.50702 * 126.12527 * 359.93166 * 6 2 1 8 8 H 1.08993 * 110.42642 * 297.32300 * 7 6 2 9 9 C 1.54912 * 110.36936 * 59.63147 * 7 6 2 10 10 C 1.55140 * 101.65379 * 155.89514 * 9 7 6 11 11 C 1.54321 * 103.01742 * 324.34957 * 10 9 7 12 12 N 1.47435 * 107.23651 * 22.28236 * 11 10 9 13 13 C 1.46903 * 111.00477 * 123.25530 * 12 11 10 14 14 C 1.50705 * 109.46806 * 69.87249 * 13 12 11 15 15 O 1.21280 * 120.00059 * 0.02562 * 14 13 12 16 16 N 1.34773 * 119.99746 * 179.97438 * 14 13 12 17 17 C 1.46504 * 119.99970 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.47207 * 270.00763 * 17 16 14 19 19 H 1.07995 * 120.00038 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99575 * 180.02562 * 18 17 16 21 21 N 1.31521 * 119.99639 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00653 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.46875 * 89.99915 * 22 20 18 24 24 H 1.48489 * 109.47476 * 210.00368 * 22 20 18 25 25 H 1.48501 * 109.46661 * 330.00514 * 22 20 18 26 26 C 1.46500 * 120.00149 * 0.02562 * 16 14 13 27 27 C 1.53006 * 109.46998 * 89.99434 * 26 16 14 28 28 C 1.47203 * 109.46872 * 179.97438 * 27 26 16 29 29 N 8.58032 * 98.39077 * 134.17441 * 2 1 3 30 30 H 1.09001 * 109.46956 * 269.97398 * 1 2 3 31 31 H 1.08996 * 109.47256 * 29.97376 * 1 2 3 32 32 H 1.08992 * 109.47371 * 149.97506 * 1 2 3 33 33 H 1.07999 * 125.89044 * 180.02562 * 4 3 2 34 34 H 1.07996 * 126.03845 * 180.23642 * 5 4 3 35 35 H 1.09009 * 110.99117 * 37.80974 * 9 7 6 36 36 H 1.08994 * 111.02525 * 274.00644 * 9 7 6 37 37 H 1.09000 * 110.70884 * 205.96616 * 10 9 7 38 38 H 1.08997 * 110.70516 * 82.72581 * 10 9 7 39 39 H 1.08997 * 109.88796 * 262.87160 * 11 10 9 40 40 H 1.09009 * 110.02073 * 141.76221 * 11 10 9 41 41 H 1.09002 * 109.46727 * 309.87713 * 13 12 11 42 42 H 1.08999 * 109.47187 * 189.87031 * 13 12 11 43 43 H 1.09003 * 109.46763 * 30.00247 * 17 16 14 44 44 H 1.08995 * 109.47081 * 150.00666 * 17 16 14 45 45 H 0.96999 * 119.99910 * 179.97438 * 21 20 18 46 46 H 1.09000 * 109.47175 * 329.99565 * 26 16 14 47 47 H 1.09001 * 109.47297 * 209.99073 * 26 16 14 48 48 H 1.08993 * 109.46955 * 300.00226 * 27 26 16 49 49 H 1.09000 * 109.47050 * 60.00054 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5347 0.7321 -0.0006 5 6 3.5437 -0.6666 0.0042 6 6 2.2589 -1.0912 -0.0005 7 6 1.7973 -2.5258 0.0003 8 1 1.2354 -2.7441 0.9084 9 6 0.9320 -2.8145 -1.2518 10 6 1.1009 -4.3494 -1.4022 11 6 2.5622 -4.5829 -0.9647 12 7 2.9539 -3.4387 -0.1213 13 6 3.4093 -3.8903 1.2003 14 6 4.7331 -4.5970 1.0610 15 8 5.2467 -4.7126 -0.0315 16 7 5.3465 -5.0995 2.1507 17 6 6.6331 -5.7870 2.0153 18 6 6.3953 -7.2567 1.7818 19 1 5.3867 -7.6404 1.7391 20 6 7.4654 -8.1116 1.6239 21 7 7.2578 -9.3941 1.4197 22 14 9.2100 -7.4482 1.6986 23 1 9.6980 -7.4955 3.1003 24 1 10.0922 -8.2775 0.8390 25 1 9.2266 -6.0439 1.2158 26 6 4.7263 -4.9593 3.4705 27 6 3.8218 -6.1638 3.7395 28 6 3.1991 -6.0232 5.0659 29 7 2.7170 -5.9152 6.0881 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3633 0.8902 -0.5134 32 1 -0.3634 -0.8897 -0.5142 33 1 4.4053 1.3711 -0.0003 34 1 4.4210 -1.2963 0.0086 35 1 1.3220 -2.2914 -2.1250 36 1 -0.1110 -2.5518 -1.0754 37 1 0.9557 -4.6533 -2.4389 38 1 0.4123 -4.8792 -0.7441 39 1 3.2078 -4.6356 -1.8413 40 1 2.6373 -5.5079 -0.3928 41 1 2.6744 -4.5753 1.6233 42 1 3.5246 -3.0292 1.8586 43 1 7.1812 -5.3691 1.1709 44 1 7.2143 -5.6534 2.9277 45 1 8.0107 -9.9956 1.3082 46 1 4.1324 -4.0457 3.4977 47 1 5.5030 -4.9107 4.2337 48 1 3.0452 -6.2125 2.9764 49 1 4.4157 -7.0774 3.7123 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932268801.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:39 Heat of formation + Delta-G solvation = 71.896654 kcal Electronic energy + Delta-G solvation = -30985.103822 eV Core-core repulsion = 26948.978944 eV Total energy + Delta-G solvation = -4036.124877 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.23536 -40.95296 -39.36801 -37.93941 -36.62957 -34.74543 -34.29449 -33.10381 -32.25269 -32.08446 -30.08621 -28.65224 -27.59180 -27.33830 -25.09317 -24.11362 -22.82303 -22.42071 -21.56823 -20.28402 -19.85941 -19.16332 -18.21905 -18.13083 -17.80503 -17.19210 -16.69099 -16.34449 -16.12509 -16.07745 -15.77409 -15.44242 -15.01213 -14.94583 -14.61783 -14.47501 -14.31638 -14.12673 -14.05140 -13.85545 -13.66837 -13.52687 -13.48578 -13.39502 -13.27827 -12.98978 -12.84926 -12.74243 -12.47013 -12.35214 -12.18468 -11.98559 -11.94838 -11.79706 -11.59574 -11.55947 -11.53287 -10.69966 -10.52010 -10.10830 -9.40966 -9.34551 -9.24858 -8.22217 -6.23839 0.97493 1.38955 1.44342 1.52874 1.64068 1.70524 1.84432 1.98662 1.99485 2.22218 2.40309 2.91440 3.13647 3.15988 3.50997 3.66546 3.78139 3.81490 3.94935 4.04237 4.11093 4.18261 4.21557 4.32957 4.40418 4.43483 4.46204 4.56364 4.57698 4.69414 4.76963 4.83974 4.85634 4.91135 4.96421 5.00960 5.06040 5.11354 5.15784 5.16844 5.34706 5.38348 5.57920 5.70640 5.83595 5.95830 5.98293 6.24113 6.36540 6.60498 6.76958 6.80180 6.83242 7.36885 7.57568 8.93216 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.011049 B = 0.003200 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.577931 B = 8749.039250 C = 9384.392703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.374 5.374 3 N -0.331 5.331 4 C 0.035 3.965 5 C -0.266 4.266 6 C 0.098 3.902 7 C 0.139 3.861 8 H 0.097 0.903 9 C -0.115 4.115 10 C -0.131 4.131 11 C 0.055 3.945 12 N -0.518 5.518 13 C 0.041 3.959 14 C 0.507 3.493 15 O -0.565 6.565 16 N -0.598 5.598 17 C 0.222 3.778 18 C -0.519 4.519 19 H 0.051 0.949 20 C 0.016 3.984 21 N -0.944 5.944 22 Si 0.931 3.069 23 H -0.258 1.258 24 H -0.292 1.292 25 H -0.256 1.256 26 C 0.118 3.882 27 C -0.042 4.042 28 C 0.247 3.753 29 N -0.488 5.488 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.198 0.802 34 H 0.136 0.864 35 H 0.065 0.935 36 H 0.111 0.889 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.054 0.946 40 H 0.047 0.953 41 H 0.091 0.909 42 H 0.120 0.880 43 H 0.019 0.981 44 H 0.048 0.952 45 H 0.264 0.736 46 H 0.112 0.888 47 H 0.096 0.904 48 H 0.123 0.877 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.319 16.612 -1.220 23.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.158 5.158 3 N -0.153 5.153 4 C -0.150 4.150 5 C -0.296 4.296 6 C -0.030 4.030 7 C 0.029 3.971 8 H 0.115 0.885 9 C -0.153 4.153 10 C -0.170 4.170 11 C -0.073 4.073 12 N -0.242 5.242 13 C -0.090 4.090 14 C 0.295 3.705 15 O -0.442 6.442 16 N -0.330 5.330 17 C 0.100 3.900 18 C -0.558 4.558 19 H 0.069 0.931 20 C -0.182 4.182 21 N -0.585 5.585 22 Si 0.755 3.245 23 H -0.183 1.183 24 H -0.219 1.219 25 H -0.180 1.180 26 C -0.006 4.006 27 C -0.084 4.084 28 C -0.070 4.070 29 N -0.166 5.166 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.128 0.872 33 H 0.214 0.786 34 H 0.154 0.846 35 H 0.084 0.916 36 H 0.129 0.871 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.109 0.891 42 H 0.138 0.862 43 H 0.037 0.963 44 H 0.066 0.934 45 H 0.073 0.927 46 H 0.130 0.870 47 H 0.114 0.886 48 H 0.141 0.859 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -17.185 17.841 -0.521 24.777 hybrid contribution 1.653 -1.690 -0.210 2.373 sum -15.532 16.151 -0.731 22.420 Atomic orbital electron populations 1.22304 0.72645 1.05911 1.04680 1.48634 1.07463 1.02527 1.57139 1.77280 1.02469 1.08902 1.26641 1.24200 0.95575 0.95610 0.99604 1.21309 0.97295 0.94439 1.16522 1.20937 0.91185 0.90149 1.00769 1.20985 0.90069 0.85505 1.00511 0.88522 1.22808 1.00265 0.96173 0.96092 1.22798 0.95053 0.95763 1.03358 1.22661 0.96088 0.91354 0.97176 1.62669 1.33550 1.15921 1.12103 1.22279 0.93563 1.00847 0.92334 1.20996 0.87303 0.78572 0.83583 1.90681 1.66972 1.59029 1.27524 1.47869 1.22144 1.55753 1.07227 1.19382 0.82612 0.90852 0.97192 1.21593 0.94024 0.92026 1.48152 0.93078 1.25649 1.03132 0.94845 0.94611 1.70025 1.32606 1.04464 1.51379 0.85960 0.80248 0.79239 0.79023 1.18266 1.21854 1.17969 1.21576 0.97342 0.97026 0.84660 1.19868 0.99839 1.02992 0.85661 1.29131 0.91963 0.91590 0.94318 1.81204 1.11605 1.10492 1.13268 0.89463 0.88936 0.87192 0.78575 0.84581 0.91584 0.87084 0.89708 0.89169 0.92721 0.93479 0.89107 0.86211 0.96328 0.93431 0.92741 0.86965 0.88584 0.85874 0.87264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.83 11.24 127.77 1.44 2.27 16 2 N -0.37 -7.29 4.01 -356.05 -1.43 -8.72 16 3 N -0.33 -8.10 12.58 -57.02 -0.72 -8.82 16 4 C 0.03 0.81 12.03 85.24 1.02 1.83 16 5 C -0.27 -6.61 10.14 21.99 0.22 -6.38 16 6 C 0.10 2.04 6.22 41.41 0.26 2.30 16 7 C 0.14 2.28 2.60 44.64 0.12 2.40 16 8 H 0.10 1.15 7.81 -2.39 -0.02 1.13 16 9 C -0.12 -1.47 5.64 31.98 0.18 -1.29 16 10 C -0.13 -1.91 6.94 31.78 0.22 -1.69 16 11 C 0.05 1.31 5.65 86.65 0.49 1.80 16 12 N -0.52 -11.95 3.78 -869.50 -3.29 -15.23 16 13 C 0.04 0.89 3.58 85.56 0.31 1.20 16 14 C 0.51 16.90 7.32 87.66 0.64 17.55 16 15 O -0.56 -24.99 15.12 -3.03 -0.05 -25.04 16 16 N -0.60 -19.43 2.46 -826.13 -2.03 -21.46 16 17 C 0.22 9.38 4.27 85.63 0.37 9.74 16 18 C -0.52 -26.64 9.47 25.60 0.24 -26.39 16 19 H 0.05 2.83 7.66 -2.91 -0.02 2.80 16 20 C 0.02 0.85 5.47 84.65 0.46 1.31 16 21 N -0.94 -55.95 13.96 21.45 0.30 -55.65 16 22 Si 0.93 42.05 27.47 68.60 1.88 43.93 16 23 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 24 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 25 H -0.26 -11.15 6.54 99.48 0.65 -10.50 16 26 C 0.12 2.58 5.21 86.38 0.45 3.03 16 27 C -0.04 -0.92 6.03 28.79 0.17 -0.75 16 28 C 0.25 5.79 15.43 89.45 1.38 7.17 16 29 N -0.49 -13.88 18.53 20.00 0.37 -13.51 16 30 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.11 0.55 5.21 -2.39 -0.01 0.53 16 33 H 0.20 3.52 8.06 -2.91 -0.02 3.50 16 34 H 0.14 3.83 7.83 -2.91 -0.02 3.81 16 35 H 0.07 1.08 8.05 -2.38 -0.02 1.06 16 36 H 0.11 0.66 6.35 -2.39 -0.02 0.65 16 37 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.05 1.24 7.31 -2.38 -0.02 1.22 16 41 H 0.09 1.49 7.01 -2.39 -0.02 1.48 16 42 H 0.12 2.14 7.33 -2.39 -0.02 2.13 16 43 H 0.02 0.89 6.48 -2.39 -0.02 0.88 16 44 H 0.05 1.83 7.32 -2.39 -0.02 1.81 16 45 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 46 H 0.11 1.64 6.44 -2.39 -0.02 1.63 16 47 H 0.10 1.98 7.89 -2.39 -0.02 1.96 16 48 H 0.12 2.21 7.22 -2.39 -0.02 2.19 16 49 H 0.11 3.08 7.25 -2.39 -0.02 3.06 16 Total: -1.00 -78.68 400.15 3.93 -74.76 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 0.91 Total: 15.65 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: 7.97 Total: 14.09 kcal Atomic # 7 Polarization: -116.60 SS G_CDS: -6.79 Total: -123.39 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -0.05 Total: -25.04 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 1.88 Total: 43.93 kcal Total: -78.68 3.93 -74.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932268801.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.654 kcal (2) G-P(sol) polarization free energy of solvation -78.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds