Wall clock time and date at job start Wed Apr 1 2020 03:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99429 * 2 1 4 4 H 1.48492 * 109.47120 * 239.99712 * 3 2 1 5 5 H 1.48496 * 109.47122 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.46751 * 119.99828 * 3 2 1 7 7 C 1.38810 * 120.00371 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99614 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99827 * 0.02562 * 7 2 1 10 10 C 1.47586 * 134.48961 * 179.97438 * 9 7 2 11 11 C 1.53946 * 86.11638 * 155.35569 * 10 9 7 12 12 N 1.46898 * 113.74489 * 137.95407 * 11 10 9 13 13 C 1.46895 * 111.00339 * 179.97438 * 12 11 10 14 14 C 1.53234 * 109.34286 * 187.25245 * 13 12 11 15 15 N 1.47081 * 108.52165 * 306.17066 * 14 13 12 16 16 C 1.34777 * 120.88677 * 231.18804 * 15 14 13 17 17 O 1.21286 * 119.99265 * 359.97438 * 16 15 14 18 18 C 1.50701 * 120.00364 * 180.02562 * 16 15 14 19 19 H 1.08997 * 109.46049 * 59.98803 * 18 16 15 20 20 C 1.53083 * 109.46497 * 299.99713 * 18 16 15 21 21 C 1.53449 * 109.48783 * 239.99629 * 20 18 16 22 22 H 1.08997 * 110.70507 * 177.10981 * 21 20 18 23 23 C 1.52191 * 107.80335 * 55.86778 * 21 20 18 24 24 C 1.33230 * 113.68008 * 301.83615 * 23 21 20 25 25 C 1.52198 * 113.67611 * 359.54676 * 24 23 21 26 26 H 1.09007 * 110.71200 * 179.97438 * 25 24 23 27 27 C 1.53440 * 108.55155 * 301.66784 * 25 24 23 28 28 C 1.53443 * 108.43566 * 299.40872 * 21 20 18 29 29 C 1.47085 * 118.23599 * 51.45628 * 15 14 13 30 30 C 1.46901 * 110.99703 * 304.30265 * 12 11 10 31 31 C 1.47577 * 134.49698 * 359.97438 * 9 7 2 32 32 H 0.97000 * 120.00844 * 0.02562 * 1 2 3 33 33 H 1.09003 * 113.76569 * 41.05633 * 10 9 7 34 34 H 1.08995 * 113.86986 * 269.66948 * 10 9 7 35 35 H 1.09004 * 113.74331 * 269.15252 * 11 10 9 36 36 H 1.09007 * 109.49058 * 67.29050 * 13 12 11 37 37 H 1.09000 * 109.51624 * 307.22845 * 13 12 11 38 38 H 1.08995 * 109.63137 * 186.46079 * 14 13 12 39 39 H 1.09004 * 109.79061 * 65.97342 * 14 13 12 40 40 H 1.08997 * 109.46830 * 119.99338 * 20 18 16 41 41 H 1.08999 * 109.46655 * 0.02562 * 20 18 16 42 42 H 1.08002 * 123.15683 * 121.56087 * 23 21 20 43 43 H 1.07999 * 123.16307 * 179.73076 * 24 23 21 44 44 H 1.09007 * 109.46926 * 176.06396 * 27 25 24 45 45 H 1.08997 * 109.47217 * 296.05071 * 27 25 24 46 46 H 1.09000 * 109.46497 * 180.59337 * 28 21 20 47 47 H 1.08997 * 109.46879 * 300.58477 * 28 21 20 48 48 H 1.08999 * 109.62689 * 68.25413 * 29 15 14 49 49 H 1.09001 * 109.62853 * 188.83371 * 29 15 14 50 50 H 1.09000 * 109.49042 * 292.70240 * 30 12 11 51 51 H 1.08997 * 109.49233 * 52.78578 * 30 12 11 52 52 H 1.09000 * 113.77229 * 90.34401 * 31 9 7 53 53 H 1.09003 * 113.76995 * 318.94631 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.1038 1.6966 -1.2124 5 1 1.2850 2.7464 -0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2019 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 1.7204 -3.8101 0.0005 11 6 0.3474 -4.0830 0.6410 12 7 -0.3348 -5.2646 0.0968 13 6 -1.6351 -5.4688 0.7489 14 6 -2.2306 -6.8031 0.2872 15 7 -2.2634 -6.8162 -1.1832 16 6 -3.3954 -7.1231 -1.8472 17 8 -4.4049 -7.3938 -1.2319 18 6 -3.4064 -7.1311 -3.3542 19 1 -2.6814 -7.8587 -3.7188 20 6 -3.0383 -5.7392 -3.8744 21 6 -4.1928 -5.1874 -4.7214 22 1 -3.9726 -4.1751 -5.0603 23 6 -5.4498 -5.2067 -3.8638 24 6 -5.7670 -6.4171 -3.4063 25 6 -4.8069 -7.5103 -3.8533 26 1 -5.1105 -8.4775 -3.4525 27 6 -4.7834 -7.5421 -5.3872 28 6 -4.4196 -6.1338 -5.9077 29 6 -1.0265 -6.4913 -1.9098 30 6 -0.4795 -5.1638 -1.3616 31 6 -0.1031 -2.7575 0.0005 32 1 -0.4851 0.8400 -0.0004 33 1 2.5627 -4.0322 0.6558 34 1 1.8328 -4.2366 -0.9962 35 1 0.3598 -4.0639 1.7308 36 1 -2.3095 -4.6564 0.4779 37 1 -1.5015 -5.4851 1.8306 38 1 -3.2432 -6.9067 0.6769 39 1 -1.6138 -7.6267 0.6470 40 1 -2.1387 -5.8062 -4.4861 41 1 -2.8552 -5.0730 -3.0313 42 1 -6.0278 -4.3215 -3.6429 43 1 -6.6263 -6.6055 -2.7798 44 1 -4.0479 -8.2727 -5.7242 45 1 -5.7691 -7.8206 -5.7600 46 1 -5.2307 -5.7515 -6.5275 47 1 -3.5077 -6.1973 -6.5014 48 1 -0.2934 -7.2834 -1.7572 49 1 -1.2427 -6.3886 -2.9732 50 1 -1.1698 -4.3556 -1.6036 51 1 0.4925 -4.9591 -1.8103 52 1 -0.5270 -2.8733 -0.9970 53 1 -0.7168 -2.1392 0.6557 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941414092.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:17 Heat of formation + Delta-G solvation = 41.158316 kcal Electronic energy + Delta-G solvation = -32175.135203 eV Core-core repulsion = 28241.217754 eV Total energy + Delta-G solvation = -3933.917448 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.27010 -40.89580 -39.65862 -37.86867 -35.26653 -33.92264 -32.83877 -31.97597 -31.61468 -31.37992 -29.71427 -27.78709 -26.63475 -24.96461 -24.76891 -23.97235 -23.26800 -22.42807 -22.09752 -20.66983 -19.57231 -18.74928 -18.27710 -17.84771 -17.40036 -17.12682 -16.95593 -16.73410 -16.21918 -15.98436 -15.82702 -15.63959 -15.45480 -15.17125 -14.48679 -14.08364 -13.94016 -13.82861 -13.66965 -13.42096 -13.40569 -13.20269 -13.16600 -13.09837 -13.02379 -12.87499 -12.73107 -12.67144 -12.42977 -12.27928 -12.18275 -11.99015 -11.83353 -11.74184 -11.53608 -11.37874 -11.06626 -10.84690 -10.77343 -10.56143 -9.88700 -9.73016 -9.25201 -8.86112 -7.91516 -5.25904 1.31980 1.43794 1.47190 1.53353 1.64242 1.99437 2.44446 2.84351 3.28228 3.41147 3.48311 3.53933 3.67542 3.82854 3.84461 3.98550 4.03439 4.12019 4.16549 4.20794 4.25217 4.31600 4.36162 4.39854 4.48012 4.50075 4.51855 4.56253 4.60271 4.66127 4.72461 4.75907 4.79977 4.87820 4.94670 4.99281 5.01811 5.09243 5.11423 5.13803 5.17239 5.19932 5.22102 5.34854 5.37626 5.39650 5.46317 5.50890 5.74691 5.89502 6.00622 6.06020 6.12163 6.44892 6.89087 7.18608 7.59354 8.54481 9.24106 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.014082 B = 0.002917 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.836152 B = 9596.916700 C =10692.549407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.069 4.069 3 Si 0.979 3.021 4 H -0.275 1.275 5 H -0.297 1.297 6 H -0.275 1.275 7 C -0.233 4.233 8 H 0.087 0.913 9 N -0.638 5.638 10 C 0.130 3.870 11 C 0.063 3.937 12 N -0.513 5.513 13 C 0.046 3.954 14 C 0.125 3.875 15 N -0.613 5.613 16 C 0.515 3.485 17 O -0.577 6.577 18 C -0.094 4.094 19 H 0.129 0.871 20 C -0.107 4.107 21 C -0.061 4.061 22 H 0.083 0.917 23 C -0.189 4.189 24 C -0.145 4.145 25 C -0.040 4.040 26 H 0.077 0.923 27 C -0.106 4.106 28 C -0.108 4.108 29 C 0.112 3.888 30 C 0.037 3.963 31 C 0.135 3.865 32 H 0.246 0.754 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.101 0.899 36 H 0.012 0.988 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.046 0.954 42 H 0.109 0.891 43 H 0.103 0.897 44 H 0.090 0.910 45 H 0.068 0.932 46 H 0.065 0.935 47 H 0.085 0.915 48 H 0.096 0.904 49 H 0.115 0.885 50 H 0.020 0.980 51 H 0.093 0.907 52 H 0.020 0.980 53 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.167 -19.486 -10.977 23.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.261 4.261 3 Si 0.807 3.193 4 H -0.201 1.201 5 H -0.223 1.223 6 H -0.201 1.201 7 C -0.361 4.361 8 H 0.105 0.895 9 N -0.365 5.365 10 C 0.005 3.995 11 C -0.047 4.047 12 N -0.237 5.237 13 C -0.082 4.082 14 C 0.002 3.998 15 N -0.346 5.346 16 C 0.305 3.695 17 O -0.457 6.457 18 C -0.115 4.115 19 H 0.146 0.854 20 C -0.144 4.144 21 C -0.080 4.080 22 H 0.101 0.899 23 C -0.207 4.207 24 C -0.163 4.163 25 C -0.059 4.059 26 H 0.095 0.905 27 C -0.144 4.144 28 C -0.145 4.145 29 C -0.010 4.010 30 C -0.092 4.092 31 C 0.007 3.993 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.119 0.881 36 H 0.030 0.970 37 H 0.114 0.886 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.124 0.876 41 H 0.065 0.935 42 H 0.127 0.873 43 H 0.121 0.879 44 H 0.109 0.891 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.104 0.896 48 H 0.115 0.885 49 H 0.133 0.867 50 H 0.039 0.961 51 H 0.111 0.889 52 H 0.038 0.962 53 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -6.338 -19.734 -10.545 23.254 hybrid contribution -0.601 2.475 0.426 2.583 sum -6.940 -17.258 -10.119 21.175 Atomic orbital electron populations 1.70031 1.06592 1.25514 1.58354 1.25645 0.96483 1.00991 1.03026 0.85145 0.77116 0.78649 0.78407 1.20099 1.22337 1.20088 1.19400 0.90911 0.83236 1.42580 0.89543 1.46123 1.03351 1.00866 1.86208 1.22818 0.95524 0.82809 0.98306 1.23859 0.95124 0.86616 0.99058 1.62077 1.19745 1.37462 1.04392 1.22406 0.89307 0.96243 1.00279 1.21614 1.01541 0.96983 0.79692 1.48271 1.10949 1.68281 1.07102 1.21204 0.81913 0.75140 0.91257 1.90641 1.33782 1.50650 1.70626 1.21561 1.00037 1.00299 0.89615 0.85365 1.21867 0.99221 0.93714 0.99621 1.20720 0.92247 0.99924 0.95081 0.89895 1.23996 0.98957 0.97175 1.00596 1.23793 0.99077 0.95228 0.98249 1.20484 0.91538 0.97459 0.96453 0.90479 1.21931 1.02840 0.97540 0.92046 1.21897 1.02607 0.94044 0.95982 1.22297 0.85173 0.96139 0.97383 1.22691 1.01298 0.96685 0.88529 1.22777 0.87415 0.92655 0.96418 0.94508 0.92355 0.92564 0.88120 0.97004 0.88556 0.90163 0.89107 0.87612 0.93515 0.87291 0.87931 0.89136 0.91323 0.91654 0.89625 0.88548 0.86744 0.96130 0.88892 0.96239 0.95619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.63 11.38 21.65 0.25 -58.39 16 2 C -0.07 -3.94 5.50 84.86 0.47 -3.48 16 3 Si 0.98 45.84 29.55 68.60 2.03 47.87 16 4 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 7 C -0.23 -13.03 10.70 84.03 0.90 -12.13 16 8 H 0.09 4.57 7.83 -2.91 -0.02 4.55 16 9 N -0.64 -32.45 3.70 -717.28 -2.65 -35.10 16 10 C 0.13 5.00 8.41 86.48 0.73 5.72 16 11 C 0.06 2.28 4.05 46.67 0.19 2.47 16 12 N -0.51 -14.74 4.76 -875.07 -4.17 -18.91 16 13 C 0.05 1.28 5.58 86.38 0.48 1.76 16 14 C 0.12 3.01 6.60 86.35 0.57 3.58 16 15 N -0.61 -14.32 2.94 -817.05 -2.40 -16.72 16 16 C 0.52 13.01 6.56 87.66 0.57 13.59 16 17 O -0.58 -18.77 14.40 -3.05 -0.04 -18.82 16 18 C -0.09 -1.70 1.73 -11.37 -0.02 -1.72 16 19 H 0.13 1.54 7.99 -2.39 -0.02 1.52 16 20 C -0.11 -1.91 3.57 30.77 0.11 -1.80 16 21 C -0.06 -1.12 3.57 -10.76 -0.04 -1.16 16 22 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 23 C -0.19 -4.34 9.82 25.03 0.25 -4.10 16 24 C -0.15 -3.43 8.25 25.04 0.21 -3.23 16 25 C -0.04 -0.76 2.64 -10.76 -0.03 -0.79 16 26 H 0.08 1.55 8.06 -2.38 -0.02 1.53 16 27 C -0.11 -1.38 5.81 31.25 0.18 -1.19 16 28 C -0.11 -1.44 5.72 31.25 0.18 -1.26 16 29 C 0.11 2.14 5.72 86.50 0.50 2.63 16 30 C 0.04 0.97 4.59 86.53 0.40 1.37 16 31 C 0.13 6.41 6.81 86.48 0.59 7.00 16 32 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 33 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.06 1.98 6.04 -2.39 -0.01 1.97 16 35 H 0.10 3.66 8.08 -2.39 -0.02 3.64 16 36 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 37 H 0.10 2.42 8.07 -2.39 -0.02 2.40 16 38 H 0.08 2.14 7.06 -2.39 -0.02 2.13 16 39 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 40 H 0.11 1.30 7.38 -2.39 -0.02 1.28 16 41 H 0.05 1.11 6.56 -2.39 -0.02 1.10 16 42 H 0.11 2.56 8.06 -2.91 -0.02 2.54 16 43 H 0.10 2.65 8.06 -2.91 -0.02 2.62 16 44 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 45 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 49 H 0.11 1.67 4.13 -2.39 -0.01 1.66 16 50 H 0.02 0.67 6.11 -2.39 -0.01 0.66 16 51 H 0.09 2.48 5.90 -2.39 -0.01 2.46 16 52 H 0.02 0.97 5.71 -2.39 -0.01 0.96 16 53 H 0.03 1.42 7.15 -2.39 -0.02 1.40 16 Total: -1.00 -72.49 387.45 0.13 -72.36 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 0.89 Total: 20.43 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: 6.23 Total: 7.28 kcal Atomic # 7 Polarization: -120.15 SS G_CDS: -8.97 Total: -129.12 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.04 Total: -18.82 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -72.49 0.13 -72.36 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941414092.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.518 kcal (2) G-P(sol) polarization free energy of solvation -72.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds