Wall clock time and date at job start Wed Apr 1 2020 03:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00218 * 2 1 4 4 H 1.48501 * 109.46922 * 90.00236 * 3 2 1 5 5 H 1.48496 * 109.47354 * 210.00432 * 3 2 1 6 6 H 1.48501 * 109.47428 * 330.00540 * 3 2 1 7 7 C 1.38812 * 119.99535 * 180.28285 * 2 1 3 8 8 H 1.08002 * 119.99473 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00429 * 359.97438 * 7 2 1 10 10 C 1.47076 * 136.05571 * 359.62926 * 9 7 2 11 11 C 1.53757 * 87.88653 * 152.96206 * 10 9 7 12 12 N 1.46895 * 114.39985 * 272.67916 * 11 10 9 13 13 C 1.46909 * 111.00045 * 32.88540 * 12 11 10 14 14 C 1.53232 * 109.33938 * 172.74907 * 13 12 11 15 15 N 1.47082 * 108.52308 * 53.83487 * 14 13 12 16 16 C 1.34775 * 120.88869 * 128.79064 * 15 14 13 17 17 O 1.21277 * 120.00792 * 180.02562 * 16 15 14 18 18 C 1.50704 * 119.99566 * 0.02562 * 16 15 14 19 19 H 1.09006 * 115.50778 * 325.57973 * 18 16 15 20 20 C 1.52997 * 117.43364 * 110.93673 * 18 16 15 21 21 H 1.09007 * 119.98255 * 355.25823 * 20 18 16 22 22 C 1.53000 * 117.43126 * 180.22755 * 18 16 15 23 23 H 1.09000 * 119.98384 * 4.74071 * 22 18 16 24 24 C 1.55921 * 117.17671 * 159.54719 * 22 18 16 25 25 H 1.08994 * 115.92264 * 262.23923 * 24 22 18 26 26 C 1.57632 * 103.66551 * 133.10362 * 24 22 18 27 27 C 1.54578 * 105.30500 * 290.64239 * 26 24 22 28 28 C 1.55926 * 117.17901 * 199.33548 * 20 18 16 29 29 H 1.08993 * 115.91906 * 97.76536 * 28 20 18 30 30 C 1.56956 * 100.64719 * 330.70179 * 28 20 18 31 31 C 1.47078 * 118.23491 * 308.81020 * 15 14 13 32 32 C 1.46904 * 110.99986 * 268.58977 * 12 11 10 33 33 C 1.47072 * 136.06174 * 179.97438 * 9 7 2 34 34 H 0.97005 * 119.99717 * 359.71788 * 1 2 3 35 35 H 1.08991 * 113.46834 * 267.69546 * 10 9 7 36 36 H 1.09004 * 113.46377 * 38.13918 * 10 9 7 37 37 H 1.08998 * 114.08701 * 139.78025 * 11 10 9 38 38 H 1.09001 * 109.48709 * 292.70996 * 13 12 11 39 39 H 1.08994 * 109.48732 * 52.79150 * 13 12 11 40 40 H 1.08996 * 109.63450 * 294.12275 * 14 13 12 41 41 H 1.09005 * 109.62644 * 173.53910 * 14 13 12 42 42 H 1.08997 * 110.17467 * 171.58785 * 26 24 22 43 43 H 1.09002 * 110.08789 * 49.64587 * 26 24 22 44 44 H 1.08996 * 110.40362 * 241.09845 * 27 26 24 45 45 H 1.08997 * 110.50117 * 118.72783 * 27 26 24 46 46 H 1.08993 * 112.02502 * 63.17399 * 30 28 20 47 47 H 1.09001 * 112.01894 * 189.69214 * 30 28 20 48 48 H 1.08999 * 109.63505 * 291.47967 * 31 15 14 49 49 H 1.09006 * 109.78986 * 170.98797 * 31 15 14 50 50 H 1.09001 * 109.48780 * 307.20781 * 32 12 11 51 51 H 1.08999 * 109.49533 * 67.25793 * 32 12 11 52 52 H 1.08995 * 113.46155 * 321.86703 * 33 9 7 53 53 H 1.09002 * 113.46336 * 92.30147 * 33 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 1.4001 5 1 3.5478 1.4401 -0.7001 6 1 1.4478 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0064 9 7 1.3255 -2.3880 -0.0113 10 6 -0.0878 -2.7948 -0.0060 11 6 0.3410 -4.0887 -0.7174 12 7 0.3946 -3.9870 -2.1818 13 6 0.7924 -2.6365 -2.6015 14 6 1.0120 -2.6204 -4.1179 15 7 -0.1977 -3.1434 -4.7709 16 6 -0.7966 -2.4607 -5.7667 17 8 -1.7938 -2.9066 -6.2936 18 6 -0.2270 -1.1431 -6.2256 19 1 0.2281 -0.5315 -5.4464 20 6 0.4048 -1.0950 -7.6182 21 1 0.4999 -2.0086 -8.2051 22 6 -0.9566 -0.4154 -7.3565 23 1 -1.8940 -0.8135 -7.7449 24 6 -0.6950 1.1146 -7.5043 25 1 -1.4401 1.7710 -7.0550 26 6 -0.4286 1.2996 -9.0469 27 6 0.9340 0.6189 -9.3102 28 6 1.3826 0.0825 -7.9164 29 1 2.4441 -0.1414 -7.8111 30 6 0.7950 1.1928 -6.9754 31 6 -0.7369 -4.4310 -4.3078 32 6 -0.8878 -4.3759 -2.7839 33 6 1.6798 -3.8154 -0.0186 34 1 -0.4850 0.8401 0.0041 35 1 -0.4878 -2.9615 0.9940 36 1 -0.7261 -2.1542 -0.6147 37 1 -0.1736 -4.9822 -0.3639 38 1 0.0062 -1.9281 -2.3403 39 1 1.7171 -2.3566 -2.0971 40 1 1.8656 -3.2492 -4.3710 41 1 1.1949 -1.5986 -4.4506 42 1 -0.3780 2.3597 -9.2952 43 1 -1.2146 0.8120 -9.6237 44 1 1.6545 1.3443 -9.6879 45 1 0.8196 -0.2044 -10.0153 46 1 0.8584 0.9130 -5.9239 47 1 1.2458 2.1674 -7.1623 48 1 -0.0515 -5.2340 -4.5790 49 1 -1.7098 -4.6099 -4.7658 50 1 -1.1814 -5.3574 -2.4116 51 1 -1.6506 -3.6436 -2.5197 52 1 2.5471 -4.0441 -0.6378 53 1 1.7461 -4.2513 0.9783 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941682251.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:21 Heat of formation + Delta-G solvation = 78.365788 kcal Electronic energy + Delta-G solvation = -32267.881066 eV Core-core repulsion = 28335.577055 eV Total energy + Delta-G solvation = -3932.304011 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.38061 -41.24357 -40.12655 -37.83276 -35.01773 -34.48691 -33.77637 -32.02810 -29.97129 -29.85558 -28.93301 -27.89150 -26.36326 -25.71665 -24.87534 -24.06039 -22.59230 -22.30333 -20.94765 -20.27707 -19.55692 -19.47067 -18.75328 -18.33852 -17.39401 -16.89883 -16.84581 -16.62326 -16.45119 -16.03387 -15.98958 -15.43762 -15.32162 -15.11373 -14.53271 -14.40595 -14.07178 -13.96434 -13.77591 -13.27787 -13.21827 -13.07277 -12.85857 -12.75428 -12.50347 -12.47359 -12.43665 -12.22601 -12.22228 -12.19211 -12.08161 -12.02163 -11.89302 -11.80684 -11.59949 -11.22522 -11.20628 -10.91987 -10.78413 -10.70998 -10.59866 -9.77843 -9.12243 -8.78977 -7.86804 -5.19662 1.36963 1.45751 1.47007 1.55180 1.89003 2.48395 2.72752 2.92948 3.17124 3.35756 3.49019 3.52749 3.55100 3.74950 3.86299 3.89576 3.96090 4.02752 4.08381 4.13611 4.20064 4.29619 4.32102 4.39547 4.43322 4.52329 4.56415 4.59757 4.62811 4.64640 4.68154 4.78799 4.85348 4.87432 4.90214 4.99297 5.04380 5.05009 5.08773 5.14048 5.19090 5.19912 5.21563 5.25699 5.35361 5.39046 5.40241 5.48331 5.52474 5.56340 5.92887 6.13899 6.26961 6.39244 6.92717 7.06700 7.64470 8.64822 9.29352 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.009983 B = 0.003972 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2804.113474 B = 7047.862200 C = 9110.191437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.056 4.056 3 Si 0.964 3.036 4 H -0.294 1.294 5 H -0.262 1.262 6 H -0.299 1.299 7 C -0.216 4.216 8 H 0.085 0.915 9 N -0.627 5.627 10 C 0.121 3.879 11 C 0.051 3.949 12 N -0.500 5.500 13 C 0.060 3.940 14 C 0.119 3.881 15 N -0.605 5.605 16 C 0.542 3.458 17 O -0.586 6.586 18 C -0.184 4.184 19 H 0.124 0.876 20 C -0.115 4.115 21 H 0.114 0.886 22 C -0.134 4.134 23 H 0.103 0.897 24 C -0.079 4.079 25 H 0.105 0.895 26 C -0.113 4.113 27 C -0.111 4.111 28 C -0.066 4.066 29 H 0.118 0.882 30 C -0.139 4.139 31 C 0.121 3.879 32 C 0.045 3.955 33 C 0.125 3.875 34 H 0.243 0.757 35 H 0.011 0.989 36 H 0.034 0.966 37 H 0.116 0.884 38 H 0.007 0.993 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.062 0.938 44 H 0.084 0.916 45 H 0.068 0.932 46 H 0.059 0.941 47 H 0.089 0.911 48 H 0.093 0.907 49 H 0.085 0.915 50 H 0.113 0.887 51 H 0.008 0.992 52 H 0.057 0.943 53 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.973 -3.707 -16.765 17.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.250 4.250 3 Si 0.793 3.207 4 H -0.221 1.221 5 H -0.186 1.186 6 H -0.226 1.226 7 C -0.344 4.344 8 H 0.103 0.897 9 N -0.354 5.354 10 C -0.006 4.006 11 C -0.059 4.059 12 N -0.223 5.223 13 C -0.069 4.069 14 C -0.003 4.003 15 N -0.337 5.337 16 C 0.332 3.668 17 O -0.468 6.468 18 C -0.204 4.204 19 H 0.142 0.858 20 C -0.134 4.134 21 H 0.132 0.868 22 C -0.152 4.152 23 H 0.121 0.879 24 C -0.097 4.097 25 H 0.123 0.877 26 C -0.150 4.150 27 C -0.149 4.149 28 C -0.084 4.084 29 H 0.136 0.864 30 C -0.176 4.176 31 C -0.001 4.001 32 C -0.084 4.084 33 C -0.001 4.001 34 H 0.052 0.948 35 H 0.028 0.972 36 H 0.053 0.947 37 H 0.133 0.867 38 H 0.025 0.975 39 H 0.117 0.883 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.081 0.919 44 H 0.102 0.898 45 H 0.087 0.913 46 H 0.077 0.923 47 H 0.108 0.892 48 H 0.111 0.889 49 H 0.103 0.897 50 H 0.131 0.869 51 H 0.027 0.973 52 H 0.075 0.925 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.890 -3.947 -17.243 17.924 hybrid contribution -0.894 1.622 1.381 2.310 sum 1.996 -2.324 -15.863 16.156 Atomic orbital electron populations 1.70032 1.06437 1.25044 1.58278 1.25427 0.96130 1.00208 1.03205 0.85284 0.78182 0.79991 0.77222 1.22129 1.18599 1.22583 1.19201 0.90497 0.82527 1.42190 0.89681 1.46024 1.03180 1.00659 1.85507 1.22720 0.88475 0.93390 0.96063 1.23345 0.98202 0.97165 0.87223 1.62053 1.28447 1.25436 1.06342 1.22370 1.02232 0.88570 0.93699 1.22041 0.86508 1.00212 0.91566 1.48224 1.28496 1.22086 1.34870 1.19993 0.82583 0.85309 0.78886 1.90608 1.27155 1.70855 1.58149 1.22335 1.07220 0.95841 0.95021 0.85817 1.23624 0.96168 1.00108 0.93450 0.86787 1.23571 0.96561 0.95597 0.99509 0.87884 1.23837 0.96688 0.91910 0.97281 0.87691 1.22803 0.97427 1.01204 0.93597 1.22507 0.96696 1.00177 0.95496 1.23254 0.98041 0.91250 0.95818 0.86436 1.23970 0.95126 0.99797 0.98671 1.21732 1.00534 0.84859 0.92978 1.22483 0.89950 1.01524 0.94402 1.22631 0.96456 0.83679 0.97287 0.94813 0.97151 0.94718 0.86667 0.97509 0.88291 0.89152 0.89362 0.90255 0.91919 0.89776 0.91291 0.92264 0.89245 0.88872 0.89673 0.86935 0.97337 0.92509 0.93085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.88 11.50 21.65 0.25 -55.63 16 2 C -0.06 -3.06 5.50 84.86 0.47 -2.60 16 3 Si 0.96 44.10 29.55 68.60 2.03 46.13 16 4 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 5 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 6 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 7 C -0.22 -11.33 9.52 84.03 0.80 -10.53 16 8 H 0.09 4.27 7.83 -2.91 -0.02 4.25 16 9 N -0.63 -29.99 2.17 -737.95 -1.60 -31.60 16 10 C 0.12 5.59 6.50 83.27 0.54 6.13 16 11 C 0.05 1.77 4.37 45.47 0.20 1.97 16 12 N -0.50 -16.57 4.77 -868.80 -4.14 -20.72 16 13 C 0.06 2.29 4.35 86.38 0.38 2.67 16 14 C 0.12 3.66 6.51 86.35 0.56 4.23 16 15 N -0.61 -18.99 3.01 -817.94 -2.46 -21.45 16 16 C 0.54 18.22 7.49 87.66 0.66 18.87 16 17 O -0.59 -22.89 15.81 -3.02 -0.05 -22.94 16 18 C -0.18 -5.18 4.38 -11.54 -0.05 -5.23 16 19 H 0.12 3.61 4.41 -2.38 -0.01 3.60 16 20 C -0.11 -2.57 6.19 -9.31 -0.06 -2.63 16 21 H 0.11 2.56 8.14 -2.38 -0.02 2.54 16 22 C -0.13 -3.39 5.85 -9.31 -0.05 -3.45 16 23 H 0.10 2.96 7.82 -2.39 -0.02 2.94 16 24 C -0.08 -1.62 5.44 -6.25 -0.03 -1.65 16 25 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 26 C -0.11 -1.78 6.19 32.77 0.20 -1.58 16 27 C -0.11 -1.59 6.21 32.15 0.20 -1.39 16 28 C -0.07 -1.13 5.18 -7.38 -0.04 -1.17 16 29 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 30 C -0.14 -2.72 6.21 33.87 0.21 -2.51 16 31 C 0.12 3.42 6.59 86.35 0.57 3.99 16 32 C 0.04 1.33 5.61 86.38 0.48 1.82 16 33 C 0.12 4.67 7.93 83.18 0.66 5.33 16 34 H 0.24 14.21 8.31 -92.70 -0.77 13.44 16 35 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.03 1.86 5.70 -2.39 -0.01 1.85 16 37 H 0.12 3.28 8.01 -2.39 -0.02 3.26 16 38 H 0.01 0.32 6.59 -2.39 -0.02 0.30 16 39 H 0.10 4.29 5.14 -2.39 -0.01 4.28 16 40 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 41 H 0.09 2.63 5.57 -2.38 -0.01 2.62 16 42 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.06 1.02 8.05 -2.39 -0.02 1.00 16 44 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.07 0.96 8.05 -2.39 -0.02 0.94 16 46 H 0.06 1.39 5.92 -2.39 -0.01 1.38 16 47 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 49 H 0.08 2.51 7.07 -2.38 -0.02 2.49 16 50 H 0.11 2.63 8.02 -2.39 -0.02 2.61 16 51 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 52 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 53 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -67.07 392.32 0.62 -66.45 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: 0.90 Total: 27.51 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: 5.69 Total: 12.25 kcal Atomic # 7 Polarization: -121.44 SS G_CDS: -7.96 Total: -129.40 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.05 Total: -22.94 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -67.07 0.62 -66.45 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941682251.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.817 kcal (2) G-P(sol) polarization free energy of solvation -67.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds