Wall clock time and date at job start Wed Apr 1 2020 02:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47843 * 111.00069 * 2 1 4 4 C 1.54910 * 104.79639 * 146.36216 * 3 2 1 5 5 C 1.55139 * 101.65000 * 322.92793 * 4 3 2 6 6 C 1.47443 * 110.99738 * 120.84207 * 2 1 3 7 7 H 1.08994 * 109.88998 * 117.33704 * 6 2 1 8 8 C 1.50706 * 109.88727 * 356.14583 * 6 2 1 9 9 C 1.35358 * 126.38425 * 117.11938 * 8 6 2 10 10 C 1.41504 * 105.50561 * 179.97438 * 9 8 6 11 11 C 1.47706 * 126.52016 * 179.97438 * 10 9 8 12 12 O 1.21567 * 119.99873 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00033 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99992 * 179.97438 * 13 11 10 15 15 H 1.08999 * 115.51712 * 9.57899 * 14 13 11 16 16 C 1.52998 * 117.44109 * 224.23031 * 14 13 11 17 17 H 1.09001 * 119.54057 * 4.12692 * 16 14 13 18 18 C 1.54390 * 118.12206 * 160.80552 * 16 14 13 19 19 N 1.48144 * 104.61287 * 87.19632 * 18 16 14 20 20 C 1.36936 * 127.83911 * 140.39637 * 19 18 16 21 21 H 1.07997 * 119.99873 * 343.00093 * 20 19 18 22 22 C 1.38813 * 120.00487 * 163.00039 * 20 19 18 23 23 N 1.31624 * 119.99656 * 352.24624 * 22 20 19 24 24 Si 1.86799 * 120.00202 * 172.24758 * 22 20 19 25 25 H 1.48501 * 109.46970 * 94.95796 * 24 22 20 26 26 H 1.48499 * 109.46899 * 214.95654 * 24 22 20 27 27 H 1.48495 * 109.46965 * 334.96052 * 24 22 20 28 28 C 1.48153 * 104.32550 * 320.41304 * 19 18 16 29 29 C 1.52998 * 117.44181 * 154.99386 * 14 13 11 30 30 H 1.09005 * 119.53972 * 355.88294 * 29 14 13 31 31 N 1.31806 * 106.95730 * 359.97438 * 10 9 8 32 32 N 1.28467 * 110.07727 * 359.76457 * 31 10 9 33 33 H 0.97001 * 124.88485 * 180.23732 * 32 31 10 34 34 H 1.09005 * 109.47215 * 304.12697 * 1 2 3 35 35 H 1.09006 * 109.46850 * 64.11710 * 1 2 3 36 36 H 1.08998 * 109.47409 * 184.12222 * 1 2 3 37 37 H 1.09003 * 110.37379 * 265.18624 * 3 2 1 38 38 H 1.09004 * 110.37925 * 27.53178 * 3 2 1 39 39 H 1.09005 * 110.98973 * 81.01971 * 4 3 2 40 40 H 1.09000 * 110.99350 * 204.79563 * 4 3 2 41 41 H 1.09000 * 110.70973 * 277.26519 * 5 4 3 42 42 H 1.09003 * 110.70340 * 154.03577 * 5 4 3 43 43 H 1.08004 * 127.25034 * 359.97438 * 9 8 6 44 44 H 0.96999 * 119.99408 * 359.97438 * 13 11 10 45 45 H 1.08993 * 110.40959 * 205.98131 * 18 16 14 46 46 H 1.09002 * 110.40765 * 328.41154 * 18 16 14 47 47 H 0.96991 * 119.99735 * 179.97438 * 23 22 20 48 48 H 1.09000 * 110.40599 * 280.80301 * 28 19 18 49 49 H 1.09000 * 110.40238 * 158.36882 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9989 1.3802 0.0000 4 6 3.3047 1.3027 0.8297 5 6 2.9157 0.2822 1.9315 6 6 1.9973 -0.7057 1.1819 7 1 2.5696 -1.5784 0.8675 8 6 0.8609 -1.1290 2.0766 9 6 0.5194 -2.3998 2.3940 10 6 -0.5993 -2.2875 3.2532 11 6 -1.3450 -3.4003 3.8754 12 8 -1.0101 -4.5497 3.6641 13 7 -2.3974 -3.1416 4.6767 14 6 -3.1374 -4.2453 5.2934 15 1 -2.6830 -5.2307 5.1904 16 6 -4.6653 -4.1687 5.2721 17 1 -5.1550 -3.3471 4.7494 18 6 -5.4625 -5.4730 5.4889 19 7 -5.6030 -5.5851 6.9594 20 6 -6.6966 -6.0041 7.6692 21 1 -7.6667 -6.0387 7.1959 22 6 -6.5582 -6.3842 8.9971 23 7 -5.3593 -6.4889 9.5301 24 14 -8.0735 -6.7473 10.0274 25 1 -8.3482 -8.2066 10.0065 26 1 -7.8378 -6.3080 11.4262 27 1 -9.2389 -6.0162 9.4685 28 6 -4.2922 -5.1407 7.4879 29 6 -3.8938 -3.9497 6.5900 30 1 -3.8087 -2.9647 7.0492 31 7 -0.8493 -1.0008 3.3927 32 7 -0.0024 -0.3112 2.7162 33 1 0.0130 0.6576 2.6695 34 1 -0.3634 0.5766 0.8507 35 1 -0.3633 0.4486 -0.9246 36 1 -0.3634 -1.0250 0.0739 37 1 2.2149 1.7038 -1.0182 38 1 1.2890 2.0593 0.4723 39 1 4.1303 0.9281 0.2243 40 1 3.5500 2.2721 1.2634 41 1 2.3744 0.7747 2.7393 42 1 3.7999 -0.2279 2.3138 43 1 0.9996 -3.3083 2.0615 44 1 -2.6648 -2.2245 4.8450 45 1 -6.4427 -5.4022 5.0177 46 1 -4.9106 -6.3259 5.0937 47 1 -5.2627 -6.7542 10.4580 48 1 -3.5577 -5.9417 7.4048 49 1 -4.3898 -4.8192 8.5248 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000959972446.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:49 Heat of formation + Delta-G solvation = 97.648863 kcal Electronic energy + Delta-G solvation = -29471.195675 eV Core-core repulsion = 25436.187497 eV Total energy + Delta-G solvation = -4035.008178 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.05637 -41.07942 -40.02841 -39.59303 -36.11939 -34.45376 -33.28861 -32.96849 -32.84333 -31.92900 -28.94319 -28.87963 -27.73210 -26.70871 -25.56283 -23.42378 -22.90968 -22.19486 -21.97347 -21.86747 -20.98903 -20.85844 -18.87169 -18.64155 -18.08477 -17.62369 -17.29444 -16.77007 -16.71170 -16.30076 -15.75771 -15.67454 -15.40550 -15.11057 -14.89829 -14.77063 -14.63969 -14.54543 -14.18141 -13.78902 -13.58424 -13.35886 -13.25511 -12.89775 -12.73198 -12.70461 -12.53413 -12.30604 -12.14339 -12.09159 -12.04515 -12.02141 -11.89782 -11.69353 -11.65390 -11.40748 -10.85993 -10.70883 -10.52843 -10.23646 -9.75358 -9.38359 -8.91262 -7.92021 -5.29818 0.37297 0.92891 1.47186 1.48604 1.58840 1.63382 1.97333 2.17743 2.48643 2.84791 2.98037 3.16842 3.29999 3.37281 3.56707 3.60052 3.73326 3.81397 3.90494 4.01401 4.11331 4.13034 4.28696 4.33983 4.36790 4.38263 4.46711 4.49561 4.54195 4.61131 4.79999 4.88111 4.88800 4.91558 4.96787 4.98622 5.04759 5.14534 5.19696 5.26599 5.28402 5.38537 5.43522 5.51352 5.63224 5.83176 5.86271 5.97604 6.16535 6.34915 6.73554 6.99942 7.06228 7.66511 8.45747 9.22284 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.037468 B = 0.001699 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.132132 B =16477.515329 C =16565.913120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.530 5.530 3 C 0.031 3.969 4 C -0.123 4.123 5 C -0.137 4.137 6 C 0.140 3.860 7 H 0.117 0.883 8 C 0.025 3.975 9 C -0.179 4.179 10 C -0.027 4.027 11 C 0.604 3.396 12 O -0.567 6.567 13 N -0.672 5.672 14 C 0.116 3.884 15 H 0.112 0.888 16 C -0.166 4.166 17 H 0.133 0.867 18 C 0.149 3.851 19 N -0.616 5.616 20 C -0.242 4.242 21 H 0.083 0.917 22 C -0.063 4.063 23 N -0.948 5.948 24 Si 0.983 3.017 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.266 1.266 28 C 0.191 3.809 29 C -0.177 4.177 30 H 0.125 0.875 31 N -0.255 5.255 32 N -0.359 5.359 33 H 0.455 0.545 34 H 0.030 0.970 35 H 0.079 0.921 36 H 0.056 0.944 37 H 0.090 0.910 38 H 0.055 0.945 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.069 0.931 42 H 0.093 0.907 43 H 0.164 0.836 44 H 0.417 0.583 45 H 0.064 0.936 46 H 0.021 0.979 47 H 0.250 0.750 48 H -0.001 1.001 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.460 22.559 -20.427 35.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.254 5.254 3 C -0.096 4.096 4 C -0.161 4.161 5 C -0.175 4.175 6 C 0.031 3.969 7 H 0.135 0.865 8 C -0.102 4.102 9 C -0.208 4.208 10 C -0.187 4.187 11 C 0.390 3.610 12 O -0.444 6.444 13 N -0.321 5.321 14 C 0.010 3.990 15 H 0.129 0.871 16 C -0.187 4.187 17 H 0.151 0.849 18 C 0.024 3.976 19 N -0.340 5.340 20 C -0.370 4.370 21 H 0.101 0.899 22 C -0.256 4.256 23 N -0.596 5.596 24 Si 0.811 3.189 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.190 1.190 28 C 0.065 3.935 29 C -0.198 4.198 30 H 0.143 0.857 31 N -0.092 5.092 32 N -0.077 5.077 33 H 0.304 0.696 34 H 0.048 0.952 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.108 0.892 38 H 0.074 0.926 39 H 0.102 0.898 40 H 0.111 0.889 41 H 0.087 0.913 42 H 0.111 0.889 43 H 0.182 0.818 44 H 0.254 0.746 45 H 0.083 0.917 46 H 0.039 0.961 47 H 0.059 0.941 48 H 0.017 0.983 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 18.005 22.093 -20.285 34.983 hybrid contribution -0.728 0.005 1.305 1.494 sum 17.278 22.098 -18.980 33.869 Atomic orbital electron populations 1.22691 0.87498 1.01485 1.01394 1.63891 1.08175 1.15759 1.37615 1.23290 0.96245 0.88152 1.01880 1.22724 0.97374 0.99833 0.96154 1.22915 0.99967 0.96624 0.98037 1.21355 0.89939 0.99439 0.86172 0.86476 1.21793 0.97586 0.89954 1.00836 1.21675 0.98530 0.98315 1.02289 1.21569 1.00997 0.90448 1.05677 1.17184 0.79199 0.86887 0.77702 1.90788 1.68519 1.22299 1.62804 1.45032 1.30009 1.09820 1.47223 1.21448 0.89593 0.91479 0.96522 0.87057 1.24287 0.92035 1.01059 1.01360 0.84902 1.21246 0.97744 0.93425 0.85195 1.45469 1.11800 1.75909 1.00871 1.19401 0.87094 1.36579 0.93962 0.89937 1.25815 0.99738 1.00781 0.99316 1.70099 1.22334 1.53623 1.13494 0.85006 0.78684 0.77703 0.77547 1.21320 1.21849 1.19023 1.20763 0.85638 0.90743 0.96350 1.24378 1.03807 1.01449 0.90165 0.85724 1.73509 1.15601 1.04207 1.15886 1.43560 1.20711 1.10366 1.33079 0.69595 0.95172 0.90278 0.92533 0.89153 0.92650 0.89835 0.88903 0.91274 0.88878 0.81838 0.74552 0.91709 0.96123 0.94050 0.98339 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 8.29 127.69 1.06 1.26 16 2 N -0.53 -5.24 5.44 -890.89 -4.85 -10.09 16 3 C 0.03 0.17 6.73 86.77 0.58 0.76 16 4 C -0.12 -0.44 7.08 31.98 0.23 -0.22 16 5 C -0.14 -0.78 6.46 31.77 0.21 -0.58 16 6 C 0.14 1.36 3.90 44.51 0.17 1.54 16 7 H 0.12 1.17 8.13 -2.39 -0.02 1.15 16 8 C 0.03 0.36 3.71 41.40 0.15 0.51 16 9 C -0.18 -3.74 10.72 22.41 0.24 -3.50 16 10 C -0.03 -0.68 7.13 42.46 0.30 -0.38 16 11 C 0.60 19.04 7.82 86.74 0.68 19.71 16 12 O -0.57 -22.05 16.49 -3.93 -0.06 -22.12 16 13 N -0.67 -19.69 5.56 -445.54 -2.48 -22.17 16 14 C 0.12 4.11 5.98 44.99 0.27 4.37 16 15 H 0.11 4.53 7.40 -2.39 -0.02 4.51 16 16 C -0.17 -5.95 7.06 -9.89 -0.07 -6.02 16 17 H 0.13 4.03 8.14 -2.39 -0.02 4.01 16 18 C 0.15 6.47 7.04 86.54 0.61 7.08 16 19 N -0.62 -32.74 3.38 -688.15 -2.32 -35.06 16 20 C -0.24 -13.77 10.35 84.03 0.87 -12.90 16 21 H 0.08 4.47 7.84 -2.91 -0.02 4.44 16 22 C -0.06 -3.61 5.41 84.86 0.46 -3.15 16 23 N -0.95 -57.89 10.89 21.65 0.24 -57.65 16 24 Si 0.98 45.90 29.56 68.60 2.03 47.92 16 25 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 26 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 27 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 28 C 0.19 9.71 5.68 86.53 0.49 10.20 16 29 C -0.18 -6.84 7.05 -9.89 -0.07 -6.91 16 30 H 0.12 4.28 8.14 -2.38 -0.02 4.26 16 31 N -0.25 -5.10 11.92 -48.18 -0.57 -5.67 16 32 N -0.36 -4.76 5.09 -47.93 -0.24 -5.00 16 33 H 0.46 3.21 7.87 -219.99 -1.73 1.48 16 34 H 0.03 0.27 5.34 -2.38 -0.01 0.26 16 35 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 36 H 0.06 0.87 7.25 -2.39 -0.02 0.86 16 37 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.06 0.22 7.71 -2.39 -0.02 0.20 16 39 H 0.08 0.31 8.14 -2.38 -0.02 0.29 16 40 H 0.09 0.11 8.14 -2.39 -0.02 0.09 16 41 H 0.07 0.37 7.53 -2.39 -0.02 0.35 16 42 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 43 H 0.16 3.36 8.06 -2.91 -0.02 3.33 16 44 H 0.42 10.18 8.55 -92.71 -0.79 9.39 16 45 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 46 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 48 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 49 H 0.06 3.35 6.57 -2.39 -0.02 3.34 16 Total: -1.00 -73.80 392.04 -3.62 -77.42 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: -1.53 Total: 20.65 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: 6.18 Total: 11.78 kcal Atomic # 7 Polarization: -125.42 SS G_CDS: -10.23 Total: -135.65 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.06 Total: -22.12 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.92 kcal Total: -73.80 -3.62 -77.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000959972446.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.070 kcal (2) G-P(sol) polarization free energy of solvation -73.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds