Wall clock time and date at job start Wed Apr 1 2020 03:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00015 * 2 1 4 4 H 1.48503 * 109.46656 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46942 * 299.99209 * 3 2 1 6 6 H 1.48497 * 109.47298 * 59.99490 * 3 2 1 7 7 C 1.38813 * 120.00032 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00070 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99602 * 0.02562 * 7 2 1 10 10 C 1.47416 * 125.65051 * 14.24311 * 9 7 2 11 11 C 1.54908 * 104.83156 * 156.13696 * 10 9 7 12 12 C 1.55151 * 101.58453 * 37.00961 * 11 10 9 13 13 C 1.47022 * 125.64282 * 194.55080 * 9 7 2 14 14 H 1.09002 * 109.88454 * 300.36717 * 13 9 7 15 15 C 1.52996 * 109.88498 * 61.37824 * 13 9 7 16 16 H 1.08998 * 109.50029 * 298.00992 * 15 13 9 17 17 C 1.53040 * 109.49666 * 58.07544 * 15 13 9 18 18 C 1.53047 * 109.53956 * 181.31627 * 17 15 13 19 19 C 1.53197 * 109.30963 * 298.63655 * 18 17 15 20 20 N 1.46926 * 108.77648 * 54.63760 * 19 18 17 21 21 C 1.34774 * 120.63522 * 126.43161 * 20 19 18 22 22 O 1.21277 * 120.00323 * 179.97438 * 21 20 19 23 23 C 1.50702 * 119.99750 * 359.97438 * 21 20 19 24 24 C 1.52999 * 109.47053 * 179.97438 * 23 21 20 25 25 N 1.46503 * 109.46762 * 179.97438 * 24 23 21 26 26 C 1.36339 * 125.63940 * 269.68892 * 25 24 23 27 27 C 1.34853 * 108.21749 * 179.83564 * 26 25 24 28 28 C 1.40890 * 107.41534 * 0.42932 * 27 26 25 29 29 C 1.34847 * 107.42063 * 359.73543 * 28 27 26 30 30 C 1.46930 * 118.76046 * 306.40554 * 20 19 18 31 31 H 0.97005 * 120.00062 * 0.02562 * 1 2 3 32 32 H 1.09007 * 110.36572 * 274.97215 * 10 9 7 33 33 H 1.09000 * 110.36888 * 37.29526 * 10 9 7 34 34 H 1.09000 * 111.00229 * 278.93107 * 11 10 9 35 35 H 1.09001 * 111.03760 * 155.09968 * 11 10 9 36 36 H 1.08995 * 110.72108 * 206.13742 * 12 11 10 37 37 H 1.08995 * 110.72415 * 82.86244 * 12 11 10 38 38 H 1.08997 * 109.46347 * 301.33395 * 17 15 13 39 39 H 1.08999 * 109.45881 * 61.31066 * 17 15 13 40 40 H 1.08999 * 109.49206 * 58.58417 * 18 17 15 41 41 H 1.08993 * 109.49772 * 178.68674 * 18 17 15 42 42 H 1.08998 * 109.58088 * 174.41800 * 19 18 17 43 43 H 1.08997 * 109.58793 * 294.84461 * 19 18 17 44 44 H 1.09001 * 109.47376 * 300.00141 * 23 21 20 45 45 H 1.08999 * 109.47436 * 59.99799 * 23 21 20 46 46 H 1.08993 * 109.47290 * 300.00010 * 24 23 21 47 47 H 1.09004 * 109.47006 * 60.00480 * 24 23 21 48 48 H 1.07999 * 125.89184 * 359.97224 * 26 25 24 49 49 H 1.07996 * 126.29015 * 180.16770 * 27 26 25 50 50 H 1.07999 * 126.28434 * 179.73663 * 28 27 26 51 51 H 1.08002 * 125.89206 * 179.97438 * 29 28 27 52 52 H 1.09003 * 109.56501 * 293.78569 * 30 20 19 53 53 H 1.09000 * 109.61536 * 173.36129 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1095 -2.5516 -0.2947 11 6 -0.2528 -4.0207 -0.7645 12 6 0.7629 -4.7436 0.1590 13 6 1.8984 -3.7082 0.3012 14 1 2.6993 -3.9339 -0.4029 15 6 2.4427 -3.7259 1.7310 16 1 3.2414 -2.9902 1.8254 17 6 1.3168 -3.3860 2.7103 18 6 1.8675 -3.3712 4.1382 19 6 2.4085 -4.7614 4.4870 20 7 3.3885 -5.1572 3.4664 21 6 4.6289 -5.5479 3.8202 22 8 5.4286 -5.8727 2.9683 23 6 5.0221 -5.5811 5.2747 24 6 6.4706 -6.0574 5.4006 25 7 6.8530 -6.0891 6.8144 26 6 7.4168 -5.0597 7.5082 27 6 7.6195 -5.4677 8.7774 28 6 7.1732 -6.8010 8.8681 29 6 6.7095 -7.1551 7.6524 30 6 2.9909 -5.1198 2.0524 31 1 -0.4850 0.8401 -0.0004 32 1 -0.7035 -2.3808 0.6033 33 1 -0.4140 -1.8683 -1.0875 34 1 0.0288 -4.1251 -1.8123 35 1 -1.2649 -4.3886 -0.5957 36 1 1.1297 -5.6562 -0.3108 37 1 0.3155 -4.9610 1.1289 38 1 0.9089 -2.4046 2.4683 39 1 0.5294 -4.1358 2.6328 40 1 2.6719 -2.6392 4.2102 41 1 1.0704 -3.1063 4.8328 42 1 2.8905 -4.7313 5.4641 43 1 1.5882 -5.4791 4.5038 44 1 4.9298 -4.5814 5.6990 45 1 4.3668 -6.2660 5.8127 46 1 6.5625 -7.0572 4.9764 47 1 7.1263 -5.3727 4.8625 48 1 7.6575 -4.0849 7.1105 49 1 8.0491 -4.8817 9.5764 50 1 7.1980 -7.4248 9.7494 51 1 6.2961 -8.1172 7.3880 52 1 2.2185 -5.8672 1.8705 53 1 3.8568 -5.3258 1.4232 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963384299.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:57 Heat of formation + Delta-G solvation = 21.451740 kcal Electronic energy + Delta-G solvation = -31142.425870 eV Core-core repulsion = 27207.653880 eV Total energy + Delta-G solvation = -3934.771990 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.05145 -41.35604 -39.86050 -37.80999 -35.11554 -34.66529 -33.72865 -32.54875 -31.25071 -30.63304 -29.62080 -28.19771 -26.68019 -26.42004 -24.83769 -23.75781 -22.58696 -21.89638 -21.32556 -20.81390 -20.31135 -19.64987 -18.81165 -18.51494 -17.49208 -17.10882 -16.80926 -16.78542 -16.28849 -15.74804 -15.62670 -15.38500 -15.17602 -15.02574 -14.59218 -14.34037 -14.23575 -13.92591 -13.82906 -13.75107 -13.61862 -13.39402 -13.16831 -13.12303 -12.97965 -12.88984 -12.86125 -12.76018 -12.46133 -12.25882 -12.00796 -11.96453 -11.83567 -11.74111 -11.57548 -11.47118 -11.26370 -10.93684 -10.88052 -10.64492 -9.63715 -9.51911 -9.03457 -8.74924 -7.85515 -5.19618 1.37305 1.40852 1.42424 1.51335 1.52947 1.80627 2.18692 2.24423 2.47864 3.32979 3.48605 3.65639 3.70712 3.74228 3.85283 3.94156 4.07893 4.12000 4.24879 4.27942 4.29829 4.33791 4.35864 4.42052 4.44743 4.45144 4.56982 4.58591 4.75360 4.76369 4.81047 4.82728 4.83154 4.85073 4.86790 4.93710 5.08604 5.19751 5.22566 5.31128 5.43677 5.44911 5.46766 5.49409 5.53069 5.59720 5.68590 5.71994 5.83265 6.13001 6.27305 6.36916 6.39111 6.51326 7.07928 7.14114 7.82636 8.49588 9.25232 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.014362 B = 0.002519 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.170634 B =11111.694389 C =12171.111826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.056 4.056 3 Si 0.962 3.038 4 H -0.274 1.274 5 H -0.293 1.293 6 H -0.291 1.291 7 C -0.225 4.225 8 H 0.064 0.936 9 N -0.607 5.607 10 C 0.180 3.820 11 C -0.138 4.138 12 C -0.115 4.115 13 C 0.157 3.843 14 H 0.020 0.980 15 C -0.091 4.091 16 H 0.030 0.970 17 C -0.097 4.097 18 C -0.131 4.131 19 C 0.111 3.889 20 N -0.606 5.606 21 C 0.515 3.485 22 O -0.586 6.586 23 C -0.142 4.142 24 C 0.125 3.875 25 N -0.450 5.450 26 C -0.029 4.029 27 C -0.220 4.220 28 C -0.221 4.221 29 C -0.021 4.021 30 C 0.126 3.874 31 H 0.246 0.754 32 H 0.000 1.000 33 H 0.027 0.973 34 H 0.058 0.942 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.035 0.965 39 H 0.071 0.929 40 H 0.045 0.955 41 H 0.089 0.911 42 H 0.109 0.891 43 H 0.094 0.906 44 H 0.110 0.890 45 H 0.124 0.876 46 H 0.099 0.901 47 H 0.088 0.912 48 H 0.171 0.829 49 H 0.141 0.859 50 H 0.145 0.855 51 H 0.181 0.819 52 H 0.089 0.911 53 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.045 -16.385 15.489 23.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.250 4.250 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.220 1.220 6 H -0.218 1.218 7 C -0.354 4.354 8 H 0.082 0.918 9 N -0.330 5.330 10 C 0.055 3.945 11 C -0.176 4.176 12 C -0.153 4.153 13 C 0.050 3.950 14 H 0.037 0.963 15 C -0.113 4.113 16 H 0.048 0.952 17 C -0.134 4.134 18 C -0.169 4.169 19 C -0.011 4.011 20 N -0.338 5.338 21 C 0.304 3.696 22 O -0.467 6.467 23 C -0.182 4.182 24 C 0.003 3.997 25 N -0.125 5.125 26 C -0.158 4.158 27 C -0.245 4.245 28 C -0.246 4.246 29 C -0.151 4.151 30 C 0.003 3.997 31 H 0.055 0.945 32 H 0.018 0.982 33 H 0.046 0.954 34 H 0.077 0.923 35 H 0.102 0.898 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.054 0.946 39 H 0.089 0.911 40 H 0.064 0.936 41 H 0.108 0.892 42 H 0.127 0.873 43 H 0.112 0.888 44 H 0.128 0.872 45 H 0.142 0.858 46 H 0.117 0.883 47 H 0.106 0.894 48 H 0.188 0.812 49 H 0.159 0.841 50 H 0.162 0.838 51 H 0.198 0.802 52 H 0.107 0.893 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.321 -16.328 14.668 22.840 hybrid contribution 0.379 1.864 -0.415 1.947 sum 6.700 -14.464 14.253 21.383 Atomic orbital electron populations 1.70126 1.05919 1.24931 1.58136 1.25496 0.96393 1.00291 1.02821 0.85250 0.78133 0.80670 0.76779 1.19847 1.22005 1.21844 1.19142 0.90151 0.83855 1.42289 0.91824 1.44661 1.06343 1.01898 1.80142 1.21179 0.84400 0.92607 0.96290 1.22891 0.99655 0.96127 0.98955 1.22660 0.95218 0.96972 1.00409 1.21103 0.94913 0.86174 0.92831 0.96255 1.21701 0.97298 0.95400 0.96875 0.95161 1.21332 0.97096 1.01143 0.93839 1.21900 1.00867 0.97160 0.96959 1.21992 0.92360 0.95647 0.91101 1.48254 1.12682 1.64808 1.08018 1.20879 0.81021 0.76078 0.91639 1.90697 1.51177 1.50924 1.53888 1.21959 0.97934 1.05893 0.92413 1.21486 0.94996 1.04700 0.78492 1.44277 1.47363 1.11583 1.09300 1.22192 1.05810 0.94696 0.93144 1.21185 1.09209 0.97255 0.96853 1.21189 1.08113 0.97174 0.98085 1.22271 1.08332 0.93874 0.90594 1.21568 1.00055 0.96612 0.81487 0.94502 0.98156 0.95437 0.92334 0.89804 0.89418 0.89772 0.94605 0.91051 0.93585 0.89231 0.87283 0.88820 0.87216 0.85840 0.88264 0.89373 0.81168 0.84070 0.83755 0.80196 0.89280 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.61 10.56 21.65 0.23 -55.38 16 2 C -0.06 -3.18 5.47 84.86 0.46 -2.71 16 3 Si 0.96 46.12 29.55 68.60 2.03 48.15 16 4 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 5 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 6 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 7 C -0.22 -12.43 9.84 84.03 0.83 -11.61 16 8 H 0.06 3.54 7.83 -2.91 -0.02 3.52 16 9 N -0.61 -29.76 2.29 -668.26 -1.53 -31.29 16 10 C 0.18 8.53 5.41 86.86 0.47 9.00 16 11 C -0.14 -4.78 7.08 31.98 0.23 -4.55 16 12 C -0.12 -3.47 5.11 31.78 0.16 -3.31 16 13 C 0.16 6.07 2.96 45.34 0.13 6.20 16 14 H 0.02 0.80 8.14 -2.39 -0.02 0.79 16 15 C -0.09 -3.14 2.10 -10.72 -0.02 -3.17 16 16 H 0.03 1.26 8.04 -2.39 -0.02 1.24 16 17 C -0.10 -3.11 4.74 30.62 0.15 -2.96 16 18 C -0.13 -3.14 6.08 30.68 0.19 -2.95 16 19 C 0.11 1.88 6.34 86.36 0.55 2.43 16 20 N -0.61 -13.92 2.97 -818.89 -2.43 -16.35 16 21 C 0.51 12.00 7.70 87.66 0.67 12.68 16 22 O -0.59 -18.33 15.39 -3.02 -0.05 -18.38 16 23 C -0.14 -2.11 4.37 29.85 0.13 -1.98 16 24 C 0.13 2.03 5.38 86.38 0.46 2.50 16 25 N -0.45 -7.62 2.75 -524.47 -1.44 -9.06 16 26 C -0.03 -0.52 11.43 83.21 0.95 0.44 16 27 C -0.22 -4.05 10.86 22.14 0.24 -3.81 16 28 C -0.22 -3.86 10.86 22.14 0.24 -3.62 16 29 C -0.02 -0.34 11.43 83.21 0.95 0.61 16 30 C 0.13 3.46 5.57 86.36 0.48 3.94 16 31 H 0.25 14.17 8.31 -92.70 -0.77 13.40 16 32 H 0.00 0.02 8.06 -2.38 -0.02 0.00 16 33 H 0.03 1.50 6.92 -2.39 -0.02 1.48 16 34 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.08 2.27 5.52 -2.39 -0.01 2.26 16 38 H 0.04 1.55 7.53 -2.39 -0.02 1.53 16 39 H 0.07 2.03 6.12 -2.39 -0.01 2.02 16 40 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.11 1.25 5.93 -2.39 -0.01 1.23 16 43 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.11 1.50 7.69 -2.39 -0.02 1.48 16 45 H 0.12 1.29 7.94 -2.39 -0.02 1.27 16 46 H 0.10 1.59 8.10 -2.39 -0.02 1.57 16 47 H 0.09 1.61 8.10 -2.38 -0.02 1.59 16 48 H 0.17 2.47 8.06 -2.91 -0.02 2.44 16 49 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 50 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 51 H 0.18 1.93 8.06 -2.91 -0.02 1.91 16 52 H 0.09 2.07 6.92 -2.39 -0.02 2.05 16 53 H 0.07 2.18 7.01 -2.39 -0.02 2.17 16 Total: -1.00 -71.59 406.80 4.96 -66.63 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.87 Total: 18.56 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: 7.27 Total: -2.88 kcal Atomic # 7 Polarization: -106.91 SS G_CDS: -5.17 Total: -112.08 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.05 Total: -18.38 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -71.59 4.96 -66.63 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963384299.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.083 kcal (2) G-P(sol) polarization free energy of solvation -71.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds