Wall clock time and date at job start Wed Apr 1 2020 03:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46496 * 120.00496 * 2 1 4 4 C 1.38407 * 119.99889 * 180.02562 * 2 1 3 5 5 C 1.39896 * 119.99693 * 5.02414 * 4 2 1 6 6 N 1.31449 * 120.01342 * 179.76838 * 5 4 2 7 7 C 1.33279 * 120.00946 * 0.46022 * 6 5 4 8 8 C 1.47823 * 120.00007 * 179.79392 * 7 6 5 9 9 O 1.21563 * 119.99881 * 179.72428 * 8 7 6 10 10 N 1.34777 * 120.00128 * 359.44885 * 8 7 6 11 11 C 1.46499 * 120.00195 * 180.27954 * 10 8 7 12 12 C 1.53954 * 113.57800 * 252.71846 * 11 10 8 13 13 C 1.52906 * 86.77793 * 220.65887 * 12 11 10 14 14 C 1.52912 * 121.13007 * 150.61807 * 13 12 11 15 15 C 1.53953 * 86.78462 * 100.82298 * 14 13 12 16 16 N 1.46496 * 113.57960 * 139.33373 * 15 14 13 17 17 C 1.36942 * 119.99689 * 107.28051 * 16 15 14 18 18 H 1.07999 * 120.00141 * 359.97438 * 17 16 15 19 19 C 1.38814 * 119.99857 * 179.97438 * 17 16 15 20 20 N 1.31628 * 119.99942 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99958 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47226 * 60.00473 * 21 19 17 23 23 H 1.48508 * 109.46902 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47201 * 300.00259 * 21 19 17 25 25 C 1.52908 * 121.14005 * 259.17188 * 13 12 11 26 26 C 1.52908 * 88.04683 * 24.90023 * 13 12 11 27 27 C 1.39402 * 119.99568 * 359.51574 * 7 6 5 28 28 N 1.32052 * 119.98934 * 0.24983 * 27 7 6 29 29 H 1.09005 * 109.47092 * 270.00393 * 1 2 3 30 30 H 1.09005 * 109.47120 * 29.99718 * 1 2 3 31 31 H 1.08999 * 109.47434 * 150.00155 * 1 2 3 32 32 H 1.09001 * 109.47610 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47175 * 300.00471 * 3 2 1 34 34 H 1.08998 * 109.46794 * 59.99978 * 3 2 1 35 35 H 1.08002 * 119.99085 * 359.97438 * 5 4 2 36 36 H 0.97000 * 119.99736 * 0.27226 * 10 8 7 37 37 H 1.09002 * 112.82203 * 23.90329 * 11 10 8 38 38 H 1.08994 * 113.66151 * 335.13728 * 12 11 10 39 39 H 1.08998 * 113.66193 * 106.18918 * 12 11 10 40 40 H 1.09007 * 113.65670 * 215.29343 * 14 13 12 41 41 H 1.08992 * 113.66797 * 346.34540 * 14 13 12 42 42 H 1.08998 * 113.57404 * 270.12768 * 15 14 13 43 43 H 0.96997 * 120.00452 * 287.27740 * 16 15 14 44 44 H 0.96995 * 119.99592 * 180.02562 * 20 19 17 45 45 H 1.09002 * 113.65784 * 13.66025 * 25 13 12 46 46 H 1.09004 * 113.66349 * 144.61595 * 25 13 12 47 47 H 1.08995 * 113.66043 * 220.63254 * 26 13 12 48 48 H 1.08991 * 113.66371 * 89.56761 * 26 13 12 49 49 H 1.08002 * 120.00582 * 180.23600 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1569 -1.1987 -0.0005 5 6 1.4614 -2.4078 -0.1072 6 7 2.1186 -3.5461 -0.1123 7 6 3.4472 -3.5493 -0.0067 8 6 4.1858 -4.8298 -0.0079 9 8 5.3980 -4.8324 0.0834 10 7 3.5148 -5.9946 -0.1046 11 6 4.2462 -7.2639 -0.0996 12 6 4.2932 -7.9530 -1.4755 13 6 4.0640 -9.2676 -0.7289 14 6 3.3360 -10.4371 -1.3925 15 6 4.7263 -11.0524 -1.6344 16 7 4.7749 -12.4986 -1.4062 17 6 4.8710 -13.3567 -2.4691 18 1 4.9105 -12.9672 -3.4756 19 6 4.9175 -14.7271 -2.2528 20 7 4.8689 -15.2017 -1.0260 21 14 5.0479 -15.8976 -3.7027 22 1 6.2931 -15.6114 -4.4595 23 1 5.0796 -17.2973 -3.2075 24 1 3.8740 -15.7147 -4.5936 25 6 5.2215 -10.2227 -0.4359 26 6 3.4052 -8.4575 0.3882 27 6 4.1408 -2.3447 0.0991 28 7 3.4808 -1.2009 0.0996 29 1 -0.3633 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5138 32 1 3.2692 1.0695 -0.0005 33 1 1.9342 1.8403 -0.8899 34 1 1.9342 1.8402 0.8900 35 1 0.3845 -2.4057 -0.1887 36 1 2.5475 -5.9925 -0.1774 37 1 5.2195 -7.1891 0.3854 38 1 3.4698 -7.6739 -2.1329 39 1 5.2661 -7.8907 -1.9630 40 1 2.7162 -11.0131 -0.7052 41 1 2.8130 -10.1637 -2.3088 42 1 5.1742 -10.7578 -2.5835 43 1 4.7391 -12.8485 -0.5022 44 1 4.9018 -16.1593 -0.8749 45 1 6.2049 -9.7779 -0.5883 46 1 5.1327 -10.7373 0.5209 47 1 3.6687 -8.7982 1.3894 48 1 2.3322 -8.3203 0.2546 49 1 5.2177 -2.3468 0.1809 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963809185.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:18 Heat of formation + Delta-G solvation = 86.752032 kcal Electronic energy + Delta-G solvation = -28694.188568 eV Core-core repulsion = 24658.707868 eV Total energy + Delta-G solvation = -4035.480700 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.64811 -40.41689 -39.06730 -37.46480 -35.83649 -34.67050 -33.51411 -32.18001 -31.19415 -29.46444 -29.10100 -26.86701 -25.70113 -25.18436 -24.68630 -24.21259 -23.43756 -22.17754 -20.78019 -20.04264 -18.58911 -18.17840 -17.80776 -17.51070 -16.93201 -16.26594 -16.18437 -15.60100 -15.36097 -15.07515 -15.04125 -14.79099 -14.60025 -14.21604 -13.96765 -13.71904 -13.37608 -13.20338 -12.98104 -12.77191 -12.70498 -12.51057 -12.31890 -12.08985 -11.87703 -11.79424 -11.60566 -11.27555 -10.94578 -10.83349 -10.65959 -10.61499 -10.48363 -10.25005 -10.02317 -9.72766 -9.66664 -9.53712 -9.27985 -9.01490 -8.80606 -8.31124 -6.90099 -5.73545 -3.01701 0.23962 0.70217 2.11317 2.54431 3.00680 3.46741 3.50478 3.50990 3.52075 3.71611 3.79465 3.91463 4.41691 4.52986 4.59652 4.61331 4.64489 4.67858 4.76404 4.82326 4.87760 4.92634 4.96705 4.97290 5.11657 5.26266 5.46463 5.49737 5.59370 5.69339 5.81244 5.86795 5.98114 6.01628 6.04119 6.05318 6.17954 6.26252 6.29595 6.43016 6.43310 6.49325 6.57880 6.71008 6.88313 7.00123 7.20216 7.27812 7.50888 7.73812 8.07468 8.45554 9.56320 10.15667 10.50086 11.48963 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.033821 B = 0.001528 C = 0.001503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.696480 B =18324.306016 C =18621.445533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.598 5.598 3 C 0.086 3.914 4 C 0.372 3.628 5 C -0.007 4.007 6 N -0.374 5.374 7 C -0.050 4.050 8 C 0.582 3.418 9 O -0.539 6.539 10 N -0.700 5.700 11 C 0.121 3.879 12 C -0.124 4.124 13 C -0.101 4.101 14 C -0.148 4.148 15 C 0.168 3.832 16 N -0.713 5.713 17 C -0.242 4.242 18 H 0.070 0.930 19 C -0.014 4.014 20 N -0.934 5.934 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.128 4.128 26 C -0.129 4.129 27 C 0.173 3.827 28 N -0.510 5.510 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.172 0.828 36 H 0.408 0.592 37 H 0.115 0.885 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.054 0.946 42 H 0.074 0.926 43 H 0.385 0.615 44 H 0.255 0.745 45 H 0.061 0.939 46 H 0.081 0.919 47 H 0.073 0.927 48 H 0.084 0.916 49 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.474 35.255 4.227 37.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.310 5.310 3 C -0.057 4.057 4 C 0.132 3.868 5 C -0.180 4.180 6 N -0.089 5.089 7 C -0.190 4.190 8 C 0.367 3.633 9 O -0.415 6.415 10 N -0.349 5.349 11 C 0.017 3.983 12 C -0.162 4.162 13 C -0.103 4.103 14 C -0.189 4.189 15 C 0.056 3.944 16 N -0.351 5.351 17 C -0.373 4.373 18 H 0.088 0.912 19 C -0.210 4.210 20 N -0.582 5.582 21 Si 0.738 3.262 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.167 4.167 26 C -0.168 4.168 27 C 0.011 3.989 28 N -0.232 5.232 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.112 0.888 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.189 0.811 36 H 0.244 0.756 37 H 0.133 0.867 38 H 0.102 0.898 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.073 0.927 42 H 0.092 0.908 43 H 0.219 0.781 44 H 0.065 0.935 45 H 0.080 0.920 46 H 0.100 0.900 47 H 0.092 0.908 48 H 0.102 0.898 49 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -9.629 35.253 4.125 36.776 hybrid contribution -0.650 -0.627 -0.484 1.025 sum -10.279 34.626 3.641 36.303 Atomic orbital electron populations 1.21886 0.77506 1.03817 1.02446 1.46234 1.05795 1.03090 1.75847 1.21796 0.99061 0.83664 1.01192 1.19643 0.89888 0.87659 0.89595 1.23185 1.01375 0.86578 1.06820 1.68101 1.07789 1.28891 1.04153 1.21721 0.90634 0.95739 1.10945 1.17528 0.86511 0.82824 0.76431 1.90804 1.12980 1.87053 1.50696 1.45889 1.11155 1.05172 1.72688 1.22713 0.97206 0.80313 0.98053 1.23139 1.02489 0.94406 0.96189 1.22069 0.99177 0.92600 0.96414 1.23635 1.00260 0.95653 0.99393 1.21545 0.92878 0.84489 0.95490 1.42411 1.86689 0.99200 1.06844 1.19280 1.42400 0.87724 0.87937 0.91177 1.24752 1.02965 0.96874 0.96375 1.69655 1.57561 1.12491 1.18494 0.86271 0.77881 0.80306 0.81752 1.21264 1.21717 1.21298 1.23210 0.96033 0.96594 1.00910 1.23173 0.99390 0.94748 0.99458 1.23528 1.01699 0.85887 0.87751 1.68103 1.06248 1.29556 1.19315 0.92017 0.90206 0.90476 0.88797 0.92207 0.92235 0.81118 0.75588 0.86665 0.89821 0.90881 0.90315 0.92742 0.90804 0.78122 0.93483 0.92048 0.90036 0.90804 0.89797 0.80026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.17 10.33 59.84 0.62 0.78 16 2 N -0.60 -3.16 3.37 -189.51 -0.64 -3.80 16 3 C 0.09 0.35 10.71 59.84 0.64 0.99 16 4 C 0.37 2.95 7.37 -155.00 -1.14 1.81 16 5 C -0.01 -0.05 10.42 -17.09 -0.18 -0.23 16 6 N -0.37 -3.63 9.69 -9.44 -0.09 -3.73 16 7 C -0.05 -0.54 6.74 -82.89 -0.56 -1.10 16 8 C 0.58 7.39 7.80 -12.34 -0.10 7.29 16 9 O -0.54 -8.28 15.93 5.31 0.08 -8.20 16 10 N -0.70 -7.98 5.34 -53.80 -0.29 -8.26 16 11 C 0.12 1.50 4.24 -66.95 -0.28 1.21 16 12 C -0.12 -1.61 7.64 -26.28 -0.20 -1.81 16 13 C -0.10 -1.46 1.11 -154.71 -0.17 -1.63 16 14 C -0.15 -2.58 7.64 -26.28 -0.20 -2.78 16 15 C 0.17 3.38 4.48 -66.95 -0.30 3.08 16 16 N -0.71 -18.16 5.40 -52.48 -0.28 -18.45 16 17 C -0.24 -6.82 9.97 -15.06 -0.15 -6.97 16 18 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 19 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 20 N -0.93 -28.45 13.06 55.49 0.72 -27.73 16 21 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 C -0.13 -2.16 7.59 -26.29 -0.20 -2.36 16 26 C -0.13 -1.58 7.59 -26.28 -0.20 -1.78 16 27 C 0.17 1.74 10.76 -17.02 -0.18 1.56 16 28 N -0.51 -4.83 8.99 -11.95 -0.11 -4.94 16 29 H 0.06 0.09 8.14 -51.93 -0.42 -0.34 16 30 H 0.08 0.04 8.07 -51.93 -0.42 -0.38 16 31 H 0.08 0.08 5.98 -51.93 -0.31 -0.23 16 32 H 0.09 0.53 6.82 -51.93 -0.35 0.18 16 33 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.06 0.18 8.14 -51.93 -0.42 -0.25 16 35 H 0.17 0.74 6.02 -52.49 -0.32 0.42 16 36 H 0.41 4.05 8.06 -40.82 -0.33 3.72 16 37 H 0.12 1.58 7.46 -51.93 -0.39 1.19 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.07 1.51 8.10 -51.93 -0.42 1.08 16 43 H 0.38 10.36 7.92 -40.82 -0.32 10.03 16 44 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 46 H 0.08 1.41 8.12 -51.93 -0.42 0.99 16 47 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.08 0.93 8.12 -51.93 -0.42 0.51 16 49 H 0.18 1.64 7.63 -52.49 -0.40 1.24 16 LS Contribution 404.28 15.07 6.09 6.09 Total: -1.00 -33.92 404.28 -9.69 -43.61 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -7.46 Total: 10.25 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -2.70 Total: -2.42 kcal Atomic # 7 Polarization: -66.21 SS G_CDS: -0.68 Total: -66.90 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.08 Total: -8.20 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.92 -9.69 -43.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963809185.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.360 kcal (2) G-P(sol) polarization free energy of solvation -33.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds