Wall clock time and date at job start Wed Apr 1 2020 03:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36936 * 119.99932 * 2 1 4 4 H 1.08004 * 119.99850 * 208.58241 * 3 2 1 5 5 C 1.38812 * 120.00220 * 28.58751 * 3 2 1 6 6 N 1.31625 * 119.99833 * 8.39181 * 5 3 2 7 7 Si 1.86800 * 120.00231 * 188.39546 * 5 3 2 8 8 H 1.48500 * 109.46782 * 89.99671 * 7 5 3 9 9 H 1.48489 * 109.47196 * 210.00008 * 7 5 3 10 10 H 1.48500 * 109.46936 * 329.99830 * 7 5 3 11 11 C 1.46499 * 119.99632 * 179.97438 * 2 1 3 12 12 H 1.09006 * 110.88374 * 179.29738 * 11 2 1 13 13 C 1.55154 * 111.00597 * 55.42168 * 11 2 1 14 14 C 1.54365 * 102.92171 * 206.45069 * 13 11 2 15 15 N 1.47020 * 107.29123 * 22.13646 * 14 13 11 16 16 C 1.34771 * 125.64974 * 181.13265 * 15 14 13 17 17 O 1.21282 * 119.99977 * 184.99438 * 16 15 14 18 18 C 1.50697 * 120.00258 * 4.98703 * 16 15 14 19 19 H 1.09001 * 109.50118 * 36.95840 * 18 16 15 20 20 C 1.53124 * 109.50488 * 276.84203 * 18 16 15 21 21 C 1.53121 * 109.15873 * 182.40170 * 20 18 16 22 22 C 1.53037 * 109.27749 * 57.65816 * 21 20 18 23 23 N 1.46849 * 109.52156 * 300.81877 * 22 21 20 24 24 C 1.46904 * 110.99944 * 185.84401 * 23 22 21 25 25 C 1.52999 * 109.47343 * 159.84279 * 24 23 22 26 26 F 1.39901 * 109.46805 * 304.93145 * 25 24 23 27 27 F 1.39897 * 109.46857 * 64.92755 * 25 24 23 28 28 C 1.46842 * 111.20224 * 61.74343 * 23 22 21 29 29 C 1.47427 * 108.69833 * 1.08968 * 15 14 13 30 30 H 1.09004 * 109.46562 * 265.76841 * 1 2 3 31 31 H 1.08998 * 109.47316 * 145.77314 * 1 2 3 32 32 H 1.08992 * 109.46984 * 25.76489 * 1 2 3 33 33 H 0.97005 * 119.99795 * 180.02562 * 6 5 3 34 34 H 1.09003 * 110.71702 * 324.78424 * 13 11 2 35 35 H 1.09003 * 110.72208 * 88.05007 * 13 11 2 36 36 H 1.09003 * 109.84523 * 262.72815 * 14 13 11 37 37 H 1.09006 * 110.03145 * 141.64947 * 14 13 11 38 38 H 1.09001 * 109.52149 * 302.31091 * 20 18 16 39 39 H 1.08996 * 109.51757 * 62.49603 * 20 18 16 40 40 H 1.08993 * 109.50511 * 297.71168 * 21 20 18 41 41 H 1.09002 * 109.49651 * 177.59380 * 21 20 18 42 42 H 1.08998 * 109.46208 * 180.80422 * 22 21 20 43 43 H 1.09001 * 109.46619 * 60.83061 * 22 21 20 44 44 H 1.09003 * 109.46673 * 279.84241 * 24 23 22 45 45 H 1.08997 * 109.47068 * 39.84217 * 24 23 22 46 46 H 1.08993 * 109.47294 * 184.93212 * 25 24 23 47 47 H 1.08998 * 109.46346 * 178.24506 * 28 23 22 48 48 H 1.09000 * 109.46203 * 58.27125 * 28 23 22 49 49 H 1.09003 * 110.36840 * 217.03111 * 29 15 14 50 50 H 1.09009 * 110.45566 * 94.75952 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1311 1.2429 -0.4475 5 6 1.5826 2.3148 0.5752 6 7 0.4656 2.2120 1.2638 7 14 2.4046 3.9799 0.3720 8 1 1.8823 4.6439 -0.8493 9 1 2.1125 4.8242 1.5580 10 1 3.8726 3.7950 0.2454 11 6 2.1975 -1.2688 0.0006 12 1 3.2737 -1.0962 -0.0120 13 6 1.7636 -2.1619 -1.1916 14 6 2.0552 -3.5883 -0.6784 15 7 2.0780 -3.5280 0.7904 16 6 2.3228 -4.5652 1.6154 17 8 2.2273 -4.4209 2.8158 18 6 2.7151 -5.9044 1.0464 19 1 3.3563 -5.7568 0.1774 20 6 1.4569 -6.6713 0.6299 21 6 1.8603 -8.0535 0.1089 22 6 2.6393 -8.7960 1.1969 23 7 3.8335 -8.0223 1.5601 24 6 4.6783 -8.7692 2.5016 25 6 6.0990 -8.2019 2.4727 26 9 6.5807 -8.2178 1.1593 27 9 6.0855 -6.8864 2.9485 28 6 3.4694 -6.7092 2.1072 29 6 1.7898 -2.1448 1.2112 30 1 -0.3632 -0.0758 1.0249 31 1 -0.3634 -0.8497 -0.5780 32 1 -0.3633 0.9254 -0.4467 33 1 0.0691 3.0009 1.6655 34 1 0.7010 -2.0372 -1.4002 35 1 2.3600 -1.9403 -2.0767 36 1 3.0229 -3.9249 -1.0506 37 1 1.2729 -4.2714 -1.0093 38 1 0.7977 -6.7845 1.4905 39 1 0.9394 -6.1222 -0.1567 40 1 2.4878 -7.9403 -0.7751 41 1 0.9657 -8.6203 -0.1493 42 1 2.9403 -9.7750 0.8241 43 1 2.0065 -8.9210 2.0756 44 1 4.2704 -8.6762 3.5082 45 1 4.7010 -9.8204 2.2144 46 1 6.7461 -8.8102 3.1044 47 1 4.3733 -6.1726 2.3955 48 1 2.8327 -6.8440 2.9816 49 1 2.3844 -1.8828 2.0865 50 1 0.7277 -2.0253 1.4254 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972181684.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:56 Heat of formation + Delta-G solvation = -107.538187 kcal Electronic energy + Delta-G solvation = -31866.520120 eV Core-core repulsion = 27371.925178 eV Total energy + Delta-G solvation = -4494.594942 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.10206 -47.09610 -40.29833 -38.71106 -37.23864 -34.79930 -34.21084 -31.76131 -31.13759 -29.71869 -29.44043 -27.87194 -26.03908 -24.69615 -24.47624 -22.90410 -22.37929 -22.18503 -20.28330 -19.26594 -18.81197 -17.86889 -17.49937 -17.04550 -17.01712 -16.44786 -15.89585 -15.75862 -15.26128 -14.80812 -14.73412 -14.44010 -14.26281 -14.01319 -13.73654 -13.49424 -13.43508 -13.27118 -13.19597 -12.88489 -12.70437 -12.50337 -12.45210 -12.27490 -12.15514 -11.97082 -11.62393 -11.48709 -11.37080 -11.16944 -10.93074 -10.88295 -10.78345 -10.47095 -10.43186 -10.36711 -10.24718 -9.92872 -9.80403 -9.44331 -8.72886 -8.56986 -8.25447 -6.73451 -5.79444 -3.30009 2.84443 3.09829 3.36567 3.42432 3.44296 3.45791 3.66714 3.97656 4.17795 4.42355 4.45953 4.54568 4.62387 4.73560 4.86586 4.92876 5.00954 5.03950 5.12034 5.17891 5.24715 5.32420 5.34690 5.43821 5.46611 5.52851 5.64666 5.66842 5.70056 5.75784 5.84743 5.92594 6.00826 6.05635 6.09450 6.33100 6.42970 6.58338 6.58886 6.65553 6.69188 6.84228 6.91549 7.32000 7.66599 7.77658 7.87588 8.38276 8.44524 9.18885 9.79326 10.31302 11.26689 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.017622 B = 0.002437 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.580024 B =11488.175845 C =12246.008680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.583 5.583 3 C -0.263 4.263 4 H 0.068 0.932 5 C 0.008 3.992 6 N -0.903 5.903 7 Si 0.908 3.092 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.278 1.278 11 C 0.172 3.828 12 H 0.078 0.922 13 C -0.154 4.154 14 C 0.104 3.896 15 N -0.612 5.612 16 C 0.530 3.470 17 O -0.547 6.547 18 C -0.097 4.097 19 H 0.099 0.901 20 C -0.111 4.111 21 C -0.113 4.113 22 C 0.055 3.945 23 N -0.534 5.534 24 C 0.003 3.997 25 C 0.269 3.731 26 F -0.196 7.196 27 F -0.201 7.201 28 C 0.058 3.942 29 C 0.087 3.913 30 H 0.020 0.980 31 H -0.001 1.001 32 H 0.055 0.945 33 H 0.254 0.746 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.037 0.963 44 H 0.068 0.932 45 H 0.103 0.897 46 H 0.111 0.889 47 H 0.098 0.902 48 H 0.049 0.951 49 H 0.070 0.930 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.725 -26.245 -1.965 26.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.303 5.303 3 C -0.393 4.393 4 H 0.086 0.914 5 C -0.191 4.191 6 N -0.547 5.547 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.216 1.216 10 H -0.203 1.203 11 C 0.062 3.938 12 H 0.096 0.904 13 C -0.194 4.194 14 C -0.019 4.019 15 N -0.345 5.345 16 C 0.318 3.682 17 O -0.425 6.425 18 C -0.119 4.119 19 H 0.117 0.883 20 C -0.149 4.149 21 C -0.151 4.151 22 C -0.073 4.073 23 N -0.258 5.258 24 C -0.127 4.127 25 C 0.214 3.786 26 F -0.178 7.178 27 F -0.182 7.182 28 C -0.070 4.070 29 C -0.037 4.037 30 H 0.039 0.961 31 H 0.017 0.983 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.055 0.945 44 H 0.087 0.913 45 H 0.122 0.878 46 H 0.128 0.872 47 H 0.116 0.884 48 H 0.067 0.933 49 H 0.089 0.911 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.840 -25.932 -1.632 26.632 hybrid contribution -0.143 0.905 0.670 1.136 sum 5.697 -25.027 -0.962 25.685 Atomic orbital electron populations 1.20792 0.82661 0.97247 0.97850 1.43797 1.01765 0.99849 1.84900 1.19204 1.02024 0.86383 1.31659 0.91391 1.25205 0.97852 0.99097 0.96974 1.70040 1.20254 1.28491 1.35869 0.86213 0.79114 0.83795 0.77139 1.21366 1.21641 1.20334 1.21495 0.96422 0.85859 0.90065 0.90420 1.23185 1.02857 0.92974 1.00369 1.22053 1.00684 0.99008 0.80173 1.48538 1.69061 1.09832 1.07079 1.20100 0.77149 0.84820 0.86165 1.90686 1.52930 1.83970 1.14931 1.21221 0.98302 0.92220 1.00111 0.88294 1.21541 0.96030 0.95793 1.01565 1.21561 0.99661 0.95333 0.98496 1.22155 0.90398 0.96737 0.97970 1.61844 1.19101 1.03527 1.41349 1.23206 0.92445 0.99526 0.97502 1.21961 0.96277 0.80817 0.79513 1.92999 1.89360 1.96514 1.38879 1.92938 1.97165 1.39971 1.88172 1.22261 1.00967 0.88684 0.95052 1.23078 1.01211 0.78919 1.00484 0.96130 0.98292 0.92612 0.93537 0.90414 0.90578 0.91831 0.92113 0.91553 0.90912 0.90604 0.90920 0.90474 0.94520 0.91345 0.87839 0.87174 0.88376 0.93306 0.91103 0.91524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.82 7.89 59.85 0.47 4.29 16 2 N -0.58 -14.27 2.94 -171.03 -0.50 -14.77 16 3 C -0.26 -7.10 9.56 -15.06 -0.14 -7.25 16 4 H 0.07 1.79 7.84 -52.48 -0.41 1.38 16 5 C 0.01 0.22 5.12 -17.43 -0.09 0.13 16 6 N -0.90 -26.14 10.87 55.49 0.60 -25.53 16 7 Si 0.91 21.66 29.56 -169.99 -5.03 16.63 16 8 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 9 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 C 0.17 3.47 3.54 -65.79 -0.23 3.24 16 12 H 0.08 1.60 7.96 -51.93 -0.41 1.18 16 13 C -0.15 -2.44 6.52 -24.88 -0.16 -2.60 16 14 C 0.10 1.41 6.29 -3.04 -0.02 1.39 16 15 N -0.61 -10.23 3.33 -170.49 -0.57 -10.80 16 16 C 0.53 8.89 6.98 -10.99 -0.08 8.81 16 17 O -0.55 -11.27 16.35 5.56 0.09 -11.18 16 18 C -0.10 -1.21 2.11 -91.69 -0.19 -1.41 16 19 H 0.10 1.19 7.36 -51.93 -0.38 0.81 16 20 C -0.11 -1.14 5.27 -26.60 -0.14 -1.28 16 21 C -0.11 -0.88 6.09 -26.65 -0.16 -1.04 16 22 C 0.05 0.42 5.43 -3.83 -0.02 0.40 16 23 N -0.53 -5.06 4.42 -234.67 -1.04 -6.10 16 24 C 0.00 0.02 5.38 -3.82 -0.02 0.00 16 25 C 0.27 2.09 5.58 37.16 0.21 2.30 16 26 F -0.20 -2.04 17.17 2.25 0.04 -2.00 16 27 F -0.20 -2.27 14.59 2.25 0.03 -2.24 16 28 C 0.06 0.71 4.03 -3.83 -0.02 0.69 16 29 C 0.09 1.75 6.47 -2.53 -0.02 1.74 16 30 H 0.02 0.53 7.55 -51.93 -0.39 0.14 16 31 H 0.00 -0.03 6.11 -51.93 -0.32 -0.34 16 32 H 0.06 1.45 6.98 -51.93 -0.36 1.09 16 33 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.08 1.28 6.10 -51.93 -0.32 0.96 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.06 0.76 7.72 -51.93 -0.40 0.35 16 37 H 0.06 0.70 6.90 -51.93 -0.36 0.35 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.71 6.84 -51.93 -0.36 0.36 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.46 7.93 -51.93 -0.41 0.05 16 43 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 44 H 0.07 0.44 8.00 -51.93 -0.42 0.02 16 45 H 0.10 0.46 7.79 -51.93 -0.40 0.06 16 46 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.10 1.37 5.38 -51.93 -0.28 1.09 16 48 H 0.05 0.65 7.85 -51.93 -0.41 0.25 16 49 H 0.07 1.57 8.09 -51.93 -0.42 1.15 16 50 H 0.07 1.44 7.05 -51.92 -0.37 1.07 16 LS Contribution 387.42 15.07 5.84 5.84 Total: -1.00 -32.74 387.42 -9.23 -41.97 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -8.09 Total: -1.23 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: -0.61 Total: 9.42 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: -1.51 Total: -57.21 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.09 Total: -11.18 kcal Atomic # 9 Polarization: -4.31 SS G_CDS: 0.07 Total: -4.24 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.74 -9.23 -41.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972181684.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.566 kcal (2) G-P(sol) polarization free energy of solvation -32.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds