Wall clock time and date at job start Wed Apr 1 2020 03:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36936 * 119.99932 * 2 1 4 4 H 1.08004 * 119.99850 * 208.58241 * 3 2 1 5 5 C 1.38812 * 120.00220 * 28.58751 * 3 2 1 6 6 N 1.31625 * 119.99833 * 8.39181 * 5 3 2 7 7 Si 1.86800 * 120.00231 * 188.39546 * 5 3 2 8 8 H 1.48500 * 109.46782 * 89.99671 * 7 5 3 9 9 H 1.48489 * 109.47196 * 210.00008 * 7 5 3 10 10 H 1.48500 * 109.46936 * 329.99830 * 7 5 3 11 11 C 1.46499 * 119.99632 * 179.97438 * 2 1 3 12 12 H 1.09006 * 110.88374 * 179.29738 * 11 2 1 13 13 C 1.55154 * 111.00597 * 55.42168 * 11 2 1 14 14 C 1.54365 * 102.92171 * 206.45069 * 13 11 2 15 15 N 1.47020 * 107.29123 * 22.13646 * 14 13 11 16 16 C 1.34771 * 125.64974 * 181.13265 * 15 14 13 17 17 O 1.21282 * 119.99977 * 184.99438 * 16 15 14 18 18 C 1.50697 * 120.00258 * 4.98703 * 16 15 14 19 19 H 1.09001 * 109.50118 * 36.95840 * 18 16 15 20 20 C 1.53124 * 109.50488 * 276.84203 * 18 16 15 21 21 C 1.53121 * 109.15873 * 182.40170 * 20 18 16 22 22 C 1.53037 * 109.27749 * 57.65816 * 21 20 18 23 23 N 1.46849 * 109.52156 * 300.81877 * 22 21 20 24 24 C 1.46904 * 110.99944 * 185.84401 * 23 22 21 25 25 C 1.52999 * 109.47343 * 159.84279 * 24 23 22 26 26 F 1.39901 * 109.46805 * 304.93145 * 25 24 23 27 27 F 1.39897 * 109.46857 * 64.92755 * 25 24 23 28 28 C 1.46842 * 111.20224 * 61.74343 * 23 22 21 29 29 C 1.47427 * 108.69833 * 1.08968 * 15 14 13 30 30 H 1.09004 * 109.46562 * 265.76841 * 1 2 3 31 31 H 1.08998 * 109.47316 * 145.77314 * 1 2 3 32 32 H 1.08992 * 109.46984 * 25.76489 * 1 2 3 33 33 H 0.97005 * 119.99795 * 180.02562 * 6 5 3 34 34 H 1.09003 * 110.71702 * 324.78424 * 13 11 2 35 35 H 1.09003 * 110.72208 * 88.05007 * 13 11 2 36 36 H 1.09003 * 109.84523 * 262.72815 * 14 13 11 37 37 H 1.09006 * 110.03145 * 141.64947 * 14 13 11 38 38 H 1.09001 * 109.52149 * 302.31091 * 20 18 16 39 39 H 1.08996 * 109.51757 * 62.49603 * 20 18 16 40 40 H 1.08993 * 109.50511 * 297.71168 * 21 20 18 41 41 H 1.09002 * 109.49651 * 177.59380 * 21 20 18 42 42 H 1.08998 * 109.46208 * 180.80422 * 22 21 20 43 43 H 1.09001 * 109.46619 * 60.83061 * 22 21 20 44 44 H 1.09003 * 109.46673 * 279.84241 * 24 23 22 45 45 H 1.08997 * 109.47068 * 39.84217 * 24 23 22 46 46 H 1.08993 * 109.47294 * 184.93212 * 25 24 23 47 47 H 1.08998 * 109.46346 * 178.24506 * 28 23 22 48 48 H 1.09000 * 109.46203 * 58.27125 * 28 23 22 49 49 H 1.09003 * 110.36840 * 217.03111 * 29 15 14 50 50 H 1.09009 * 110.45566 * 94.75952 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1311 1.2429 -0.4475 5 6 1.5826 2.3148 0.5752 6 7 0.4656 2.2120 1.2638 7 14 2.4046 3.9799 0.3720 8 1 1.8823 4.6439 -0.8493 9 1 2.1125 4.8242 1.5580 10 1 3.8726 3.7950 0.2454 11 6 2.1975 -1.2688 0.0006 12 1 3.2737 -1.0962 -0.0120 13 6 1.7636 -2.1619 -1.1916 14 6 2.0552 -3.5883 -0.6784 15 7 2.0780 -3.5280 0.7904 16 6 2.3228 -4.5652 1.6154 17 8 2.2273 -4.4209 2.8158 18 6 2.7151 -5.9044 1.0464 19 1 3.3563 -5.7568 0.1774 20 6 1.4569 -6.6713 0.6299 21 6 1.8603 -8.0535 0.1089 22 6 2.6393 -8.7960 1.1969 23 7 3.8335 -8.0223 1.5601 24 6 4.6783 -8.7692 2.5016 25 6 6.0990 -8.2019 2.4727 26 9 6.5807 -8.2178 1.1593 27 9 6.0855 -6.8864 2.9485 28 6 3.4694 -6.7092 2.1072 29 6 1.7898 -2.1448 1.2112 30 1 -0.3632 -0.0758 1.0249 31 1 -0.3634 -0.8497 -0.5780 32 1 -0.3633 0.9254 -0.4467 33 1 0.0691 3.0009 1.6655 34 1 0.7010 -2.0372 -1.4002 35 1 2.3600 -1.9403 -2.0767 36 1 3.0229 -3.9249 -1.0506 37 1 1.2729 -4.2714 -1.0093 38 1 0.7977 -6.7845 1.4905 39 1 0.9394 -6.1222 -0.1567 40 1 2.4878 -7.9403 -0.7751 41 1 0.9657 -8.6203 -0.1493 42 1 2.9403 -9.7750 0.8241 43 1 2.0065 -8.9210 2.0756 44 1 4.2704 -8.6762 3.5082 45 1 4.7010 -9.8204 2.2144 46 1 6.7461 -8.8102 3.1044 47 1 4.3733 -6.1726 2.3955 48 1 2.8327 -6.8440 2.9816 49 1 2.3844 -1.8828 2.0865 50 1 0.7277 -2.0253 1.4254 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972181684.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:55 Heat of formation + Delta-G solvation = -128.964969 kcal Electronic energy + Delta-G solvation = -31867.449255 eV Core-core repulsion = 27371.925178 eV Total energy + Delta-G solvation = -4495.524077 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.79722 -47.81244 -41.51161 -39.77024 -38.66264 -36.57106 -35.02458 -33.47975 -32.16195 -31.19699 -30.15082 -29.37249 -28.06142 -25.98252 -25.22404 -24.40029 -23.59785 -22.93254 -21.19202 -20.88284 -20.01142 -18.95034 -18.57183 -18.21072 -18.17784 -17.49677 -17.22724 -16.76624 -16.50670 -16.00233 -15.81798 -15.73368 -15.26868 -15.03206 -14.91138 -14.80030 -14.47372 -14.43070 -14.31105 -14.17565 -14.01469 -13.79051 -13.48031 -13.43372 -13.20674 -13.12564 -12.91133 -12.79032 -12.57307 -12.45577 -12.38177 -12.21418 -12.14130 -12.03757 -11.85431 -11.84608 -11.70520 -11.38640 -11.11532 -10.77938 -10.63909 -9.68935 -9.44439 -8.74167 -7.88581 -5.41754 1.46294 1.47364 1.53006 1.56541 1.88474 2.48758 2.70865 3.06801 3.26412 3.43676 3.47920 3.55072 3.66764 3.72806 3.78277 3.92101 3.97627 4.09225 4.17042 4.19624 4.22969 4.28625 4.32500 4.45426 4.50998 4.54879 4.58713 4.67579 4.70849 4.75342 4.79571 4.84579 4.88394 4.95845 5.02450 5.08454 5.14004 5.17546 5.24705 5.29557 5.39337 5.42933 5.62094 5.66935 5.87417 5.98367 6.32895 6.54342 7.07997 7.12405 7.80435 8.27480 9.15964 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.017622 B = 0.002437 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.580024 B =11488.175845 C =12246.008680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.599 5.599 3 C -0.270 4.270 4 H 0.073 0.927 5 C -0.049 4.049 6 N -0.937 5.937 7 Si 0.972 3.028 8 H -0.281 1.281 9 H -0.297 1.297 10 H -0.268 1.268 11 C 0.165 3.835 12 H 0.072 0.928 13 C -0.138 4.138 14 C 0.106 3.894 15 N -0.612 5.612 16 C 0.524 3.476 17 O -0.596 6.596 18 C -0.085 4.085 19 H 0.112 0.888 20 C -0.108 4.108 21 C -0.106 4.106 22 C 0.051 3.949 23 N -0.539 5.539 24 C 0.000 4.000 25 C 0.256 3.744 26 F -0.212 7.212 27 F -0.227 7.227 28 C 0.066 3.934 29 C 0.098 3.902 30 H -0.011 1.011 31 H 0.034 0.966 32 H 0.030 0.970 33 H 0.249 0.751 34 H 0.075 0.925 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.051 0.949 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.034 0.966 44 H 0.072 0.928 45 H 0.136 0.864 46 H 0.155 0.845 47 H 0.076 0.924 48 H 0.028 0.972 49 H 0.036 0.964 50 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.663 -29.222 -4.353 30.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.320 5.320 3 C -0.400 4.400 4 H 0.091 0.909 5 C -0.244 4.244 6 N -0.583 5.583 7 Si 0.800 3.200 8 H -0.207 1.207 9 H -0.224 1.224 10 H -0.192 1.192 11 C 0.056 3.944 12 H 0.090 0.910 13 C -0.178 4.178 14 C -0.015 4.015 15 N -0.344 5.344 16 C 0.314 3.686 17 O -0.477 6.477 18 C -0.107 4.107 19 H 0.130 0.870 20 C -0.146 4.146 21 C -0.144 4.144 22 C -0.076 4.076 23 N -0.264 5.264 24 C -0.128 4.128 25 C 0.202 3.798 26 F -0.194 7.194 27 F -0.208 7.208 28 C -0.063 4.063 29 C -0.027 4.027 30 H 0.007 0.993 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.070 0.930 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.113 0.887 42 H 0.121 0.879 43 H 0.052 0.948 44 H 0.090 0.910 45 H 0.154 0.846 46 H 0.171 0.829 47 H 0.094 0.906 48 H 0.046 0.954 49 H 0.054 0.946 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.803 -28.962 -4.070 30.027 hybrid contribution -0.399 1.743 1.454 2.305 sum 6.404 -27.219 -2.616 28.084 Atomic orbital electron populations 1.20507 0.82795 0.97296 0.96260 1.43981 1.01984 1.00806 1.85262 1.19567 1.02143 0.87529 1.30776 0.90917 1.25989 0.98629 1.02598 0.97209 1.70214 1.21793 1.28941 1.37326 0.85194 0.78610 0.79488 0.76691 1.20735 1.22421 1.19221 1.21632 0.95780 0.84875 0.92084 0.90991 1.23052 1.02929 0.92895 0.98909 1.22280 1.03465 0.98173 0.77607 1.48603 1.68801 1.08265 1.08779 1.21013 0.75926 0.86091 0.85602 1.90660 1.54899 1.84866 1.17245 1.21216 0.99725 0.89611 1.00129 0.87003 1.21565 0.94440 0.97276 1.01312 1.21566 1.00703 0.93700 0.98429 1.22295 0.89755 0.97550 0.97979 1.61870 1.20026 1.02776 1.41714 1.23377 0.91312 1.00765 0.97377 1.22607 0.97864 0.80021 0.79266 1.92959 1.89628 1.96506 1.40257 1.92892 1.97339 1.42149 1.88437 1.22041 0.99387 0.90435 0.94406 1.22645 0.99152 0.81562 0.99386 0.99283 0.94748 0.95161 0.94142 0.90641 0.88430 0.89013 0.88903 0.93026 0.89971 0.89996 0.88749 0.87875 0.94772 0.90996 0.84571 0.82851 0.90615 0.95372 0.94571 0.93598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.67 7.89 127.77 1.01 9.68 16 2 N -0.60 -29.81 2.94 -695.03 -2.05 -31.85 16 3 C -0.27 -14.77 9.56 84.03 0.80 -13.97 16 4 H 0.07 3.83 7.84 -2.91 -0.02 3.81 16 5 C -0.05 -2.73 5.12 84.86 0.43 -2.30 16 6 N -0.94 -56.22 10.87 21.65 0.24 -55.99 16 7 Si 0.97 45.22 29.56 68.60 2.03 47.25 16 8 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 9 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 11 C 0.17 6.67 3.54 46.38 0.16 6.83 16 12 H 0.07 2.96 7.96 -2.38 -0.02 2.94 16 13 C -0.14 -4.03 6.52 31.80 0.21 -3.82 16 14 C 0.11 2.54 6.29 86.74 0.55 3.09 16 15 N -0.61 -20.19 3.33 -811.71 -2.70 -22.89 16 16 C 0.52 17.71 6.98 87.66 0.61 18.32 16 17 O -0.60 -25.79 16.35 -3.03 -0.05 -25.84 16 18 C -0.09 -2.02 2.11 -11.49 -0.02 -2.05 16 19 H 0.11 2.39 7.36 -2.39 -0.02 2.37 16 20 C -0.11 -1.94 5.27 30.68 0.16 -1.78 16 21 C -0.11 -1.26 6.09 30.65 0.19 -1.08 16 22 C 0.05 0.62 5.43 86.33 0.47 1.09 16 23 N -0.54 -9.05 4.42 -896.36 -3.97 -13.02 16 24 C 0.00 0.00 5.38 86.30 0.46 0.47 16 25 C 0.26 3.52 5.58 71.98 0.40 3.92 16 26 F -0.21 -4.02 17.17 44.97 0.77 -3.25 16 27 F -0.23 -5.12 14.59 44.97 0.66 -4.46 16 28 C 0.07 1.59 4.03 86.33 0.35 1.94 16 29 C 0.10 4.09 6.47 86.85 0.56 4.65 16 30 H -0.01 -0.62 7.55 -2.38 -0.02 -0.63 16 31 H 0.03 1.42 6.11 -2.39 -0.01 1.40 16 32 H 0.03 1.61 6.98 -2.39 -0.02 1.59 16 33 H 0.25 14.55 8.31 -92.70 -0.77 13.78 16 34 H 0.08 2.26 6.10 -2.39 -0.01 2.25 16 35 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.09 1.77 7.72 -2.39 -0.02 1.75 16 37 H 0.09 1.72 6.90 -2.38 -0.02 1.70 16 38 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.08 1.32 6.84 -2.39 -0.02 1.31 16 40 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.10 0.77 7.93 -2.39 -0.02 0.75 16 43 H 0.03 0.44 8.14 -2.39 -0.02 0.43 16 44 H 0.07 0.80 8.00 -2.39 -0.02 0.79 16 45 H 0.14 0.67 7.79 -2.39 -0.02 0.65 16 46 H 0.15 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.08 2.18 5.38 -2.39 -0.01 2.16 16 48 H 0.03 0.78 7.85 -2.39 -0.02 0.76 16 49 H 0.04 1.71 8.09 -2.39 -0.02 1.69 16 50 H 0.05 2.08 7.05 -2.38 -0.02 2.07 16 Total: -1.00 -76.31 387.42 2.21 -74.10 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 0.93 Total: 10.97 kcal Atomic # 6 Polarization: 18.64 SS G_CDS: 6.34 Total: 24.98 kcal Atomic # 7 Polarization: -115.27 SS G_CDS: -8.48 Total: -123.75 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.05 Total: -25.84 kcal Atomic # 9 Polarization: -9.14 SS G_CDS: 1.43 Total: -7.71 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -76.31 2.21 -74.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972181684.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.866 kcal (2) G-P(sol) polarization free energy of solvation -76.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds