Wall clock time and date at job start Wed Apr 1 2020 03:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36945 * 119.99911 * 2 1 4 4 H 1.08001 * 119.99715 * 203.88138 * 3 2 1 5 5 C 1.38809 * 119.99882 * 23.88545 * 3 2 1 6 6 N 1.31614 * 120.00411 * 9.64656 * 5 3 2 7 7 Si 1.86799 * 119.99745 * 189.65184 * 5 3 2 8 8 H 1.48506 * 109.47250 * 359.97438 * 7 5 3 9 9 H 1.48501 * 109.47352 * 119.99514 * 7 5 3 10 10 H 1.48503 * 109.47205 * 239.99750 * 7 5 3 11 11 C 1.46497 * 120.00213 * 179.97438 * 2 1 3 12 12 H 1.09000 * 110.64676 * 178.31658 * 11 2 1 13 13 C 1.55161 * 110.71926 * 301.45226 * 11 2 1 14 14 C 1.54913 * 101.58031 * 154.03865 * 13 11 2 15 15 N 1.47421 * 104.83262 * 322.99537 * 14 13 11 16 16 C 1.34776 * 125.64699 * 204.08705 * 15 14 13 17 17 O 1.21275 * 120.00232 * 180.02562 * 16 15 14 18 18 C 1.50702 * 120.00183 * 0.02590 * 16 15 14 19 19 H 1.09007 * 109.50275 * 59.91866 * 18 16 15 20 20 C 1.53121 * 109.53624 * 299.82365 * 18 16 15 21 21 C 1.53121 * 109.16071 * 182.38141 * 20 18 16 22 22 C 1.53031 * 109.27671 * 57.65222 * 21 20 18 23 23 N 1.46838 * 109.52870 * 300.81859 * 22 21 20 24 24 C 1.46898 * 111.00471 * 185.84084 * 23 22 21 25 25 C 1.53003 * 109.46760 * 312.77186 * 24 23 22 26 26 F 1.39896 * 109.47640 * 305.14840 * 25 24 23 27 27 F 1.39904 * 109.47003 * 65.15355 * 25 24 23 28 28 C 1.46851 * 111.19773 * 61.73974 * 23 22 21 29 29 C 1.47021 * 108.70603 * 24.35394 * 15 14 13 30 30 H 1.09003 * 109.47118 * 275.36631 * 1 2 3 31 31 H 1.09000 * 109.47033 * 35.36836 * 1 2 3 32 32 H 1.08993 * 109.46820 * 155.36347 * 1 2 3 33 33 H 0.96999 * 120.00183 * 180.02562 * 6 5 3 34 34 H 1.09001 * 110.99875 * 35.97076 * 13 11 2 35 35 H 1.08992 * 111.03928 * 272.13030 * 13 11 2 36 36 H 1.08996 * 110.36615 * 204.14860 * 14 13 11 37 37 H 1.09003 * 110.45363 * 81.87905 * 14 13 11 38 38 H 1.08998 * 109.52389 * 302.28832 * 20 18 16 39 39 H 1.09008 * 109.52120 * 62.41533 * 20 18 16 40 40 H 1.08998 * 109.50147 * 177.59391 * 21 20 18 41 41 H 1.08999 * 109.50475 * 297.66945 * 21 20 18 42 42 H 1.09006 * 109.45771 * 180.80186 * 22 21 20 43 43 H 1.08998 * 109.46305 * 60.84031 * 22 21 20 44 44 H 1.08993 * 109.47040 * 72.77324 * 24 23 22 45 45 H 1.09002 * 109.47054 * 192.77522 * 24 23 22 46 46 H 1.09000 * 109.46600 * 185.14424 * 25 24 23 47 47 H 1.09004 * 109.45950 * 58.27766 * 28 23 22 48 48 H 1.08996 * 109.46658 * 178.25556 * 28 23 22 49 49 H 1.09004 * 109.88102 * 118.12509 * 29 15 14 50 50 H 1.08998 * 109.88154 * 239.29527 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1603 1.2260 -0.3787 5 6 1.5448 2.3366 0.4868 6 7 0.3935 2.2576 1.1197 7 14 2.3647 3.9973 0.2434 8 1 3.6416 3.8158 -0.4928 9 1 1.4647 4.8841 -0.5369 10 1 2.6399 4.6122 1.5668 11 6 2.1975 -1.2687 0.0006 12 1 3.2726 -1.0917 -0.0295 13 6 1.8162 -2.1222 1.2390 14 6 2.1053 -3.5562 0.7293 15 7 1.6993 -3.5420 -0.6878 16 6 1.3360 -4.6193 -1.4116 17 8 1.0201 -4.4896 -2.5753 18 6 1.3223 -5.9852 -0.7749 19 1 0.6301 -5.9872 0.0672 20 6 2.7290 -6.3341 -0.2811 21 6 2.7181 -7.7465 0.3102 22 6 2.2315 -8.7351 -0.7518 23 7 0.8819 -8.3587 -1.1910 24 6 0.3274 -9.3632 -2.1083 25 6 1.3710 -9.7151 -3.1704 26 9 1.7976 -8.5466 -3.8104 27 9 2.4649 -10.3388 -2.5607 28 6 0.8761 -7.0249 -1.8054 29 6 1.7626 -2.1590 -1.1826 30 1 -0.3633 0.0961 1.0232 31 1 -0.3633 0.8380 -0.5948 32 1 -0.3633 -0.9341 -0.4284 33 1 -0.0294 3.0617 1.4595 34 1 0.7618 -2.0009 1.4873 35 1 2.4473 -1.8764 2.0929 36 1 1.5140 -4.2831 1.2861 37 1 3.1674 -3.7849 0.8174 38 1 3.4285 -6.2942 -1.1161 39 1 3.0340 -5.6202 0.4841 40 1 3.7261 -8.0171 0.6246 41 1 2.0486 -7.7760 1.1697 42 1 2.2091 -9.7398 -0.3295 43 1 2.9099 -8.7149 -1.6047 44 1 0.0625 -10.2598 -1.5481 45 1 -0.5625 -8.9611 -2.5926 46 1 0.9299 -10.3906 -3.9034 47 1 1.5608 -7.0127 -2.6534 48 1 -0.1309 -6.7873 -2.1482 49 1 2.4910 -2.0873 -1.9904 50 1 0.7804 -1.8470 -1.5375 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972181685.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:59 Heat of formation + Delta-G solvation = -95.583333 kcal Electronic energy + Delta-G solvation = -32084.092853 eV Core-core repulsion = 27590.016312 eV Total energy + Delta-G solvation = -4494.076541 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.51608 -47.39022 -40.34782 -38.66470 -37.27275 -34.88580 -34.22616 -31.71060 -31.09920 -29.75644 -29.39166 -27.80613 -26.05307 -24.86922 -24.37867 -22.92630 -22.59330 -22.13333 -20.35292 -19.29535 -18.99282 -18.00105 -17.76761 -17.10044 -16.95931 -16.62838 -15.93018 -15.61036 -15.32601 -15.14580 -14.65078 -14.39866 -14.15470 -13.95416 -13.84059 -13.61149 -13.56197 -13.28534 -13.17373 -13.01143 -12.58110 -12.50636 -12.34580 -12.32386 -12.17782 -11.96227 -11.70918 -11.41227 -11.32901 -11.06050 -10.96266 -10.86009 -10.78555 -10.56366 -10.52475 -10.44510 -10.21244 -9.88184 -9.86719 -9.47813 -8.59624 -8.55817 -8.29367 -6.80751 -5.76190 -3.25124 2.84231 3.07278 3.35709 3.36033 3.43475 3.45226 3.60590 3.89805 4.09985 4.29304 4.45467 4.47347 4.59399 4.73261 4.87938 4.92986 5.04775 5.06497 5.16247 5.23117 5.28760 5.31978 5.39187 5.47601 5.53044 5.56524 5.59587 5.70462 5.72584 5.77595 5.84569 5.89689 6.01617 6.02564 6.12562 6.32123 6.41017 6.58350 6.61980 6.65478 6.69221 6.82131 6.88606 7.37286 7.71526 7.78253 7.82528 8.34710 8.40695 9.19104 9.80816 10.29891 11.28215 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.029667 B = 0.002191 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.571288 B =12776.890010 C =13036.204267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.587 5.587 3 C -0.258 4.258 4 H 0.070 0.930 5 C 0.004 3.996 6 N -0.906 5.906 7 Si 0.907 3.093 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.173 3.827 12 H 0.077 0.923 13 C -0.151 4.151 14 C 0.099 3.901 15 N -0.609 5.609 16 C 0.530 3.470 17 O -0.548 6.548 18 C -0.097 4.097 19 H 0.102 0.898 20 C -0.120 4.120 21 C -0.114 4.114 22 C 0.041 3.959 23 N -0.531 5.531 24 C 0.011 3.989 25 C 0.221 3.779 26 F -0.198 7.198 27 F -0.203 7.203 28 C 0.059 3.941 29 C 0.086 3.914 30 H 0.033 0.967 31 H 0.043 0.957 32 H 0.000 1.000 33 H 0.252 0.748 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.051 0.949 44 H 0.108 0.892 45 H 0.106 0.894 46 H 0.110 0.890 47 H 0.068 0.932 48 H 0.082 0.918 49 H 0.059 0.941 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.744 -26.600 -2.295 26.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.308 5.308 3 C -0.388 4.388 4 H 0.088 0.912 5 C -0.194 4.194 6 N -0.551 5.551 7 Si 0.737 3.263 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.063 3.937 12 H 0.096 0.904 13 C -0.192 4.192 14 C -0.024 4.024 15 N -0.343 5.343 16 C 0.317 3.683 17 O -0.426 6.426 18 C -0.118 4.118 19 H 0.120 0.880 20 C -0.158 4.158 21 C -0.152 4.152 22 C -0.087 4.087 23 N -0.254 5.254 24 C -0.119 4.119 25 C 0.166 3.834 26 F -0.179 7.179 27 F -0.184 7.184 28 C -0.069 4.069 29 C -0.038 4.038 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.019 0.981 33 H 0.063 0.937 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.097 0.903 43 H 0.069 0.931 44 H 0.126 0.874 45 H 0.124 0.876 46 H 0.127 0.873 47 H 0.086 0.914 48 H 0.100 0.900 49 H 0.078 0.922 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.171 -26.358 -2.473 26.499 hybrid contribution 0.903 0.957 -0.708 1.494 sum 2.074 -25.401 -3.181 25.683 Atomic orbital electron populations 1.20811 0.82420 0.95528 0.99618 1.43861 1.01900 0.99872 1.85135 1.19266 0.98857 0.85549 1.35109 0.91227 1.25067 0.97590 0.98682 0.98091 1.70068 1.17777 1.27326 1.39917 0.86149 0.78751 0.84052 0.77353 1.20274 1.21597 1.21674 1.21289 0.96274 0.85987 0.90174 0.90447 1.23395 1.02897 0.92594 1.00285 1.22452 0.99257 0.99324 0.81393 1.48471 1.65835 1.07656 1.12301 1.20135 0.76926 0.85144 0.86055 1.90686 1.49034 1.86109 1.16760 1.21206 0.99356 0.91571 0.99709 0.88029 1.21725 0.95052 0.97614 1.01376 1.21595 1.01345 0.93927 0.98358 1.22554 0.88490 0.99177 0.98451 1.61990 1.23365 1.01868 1.38141 1.23426 0.96921 0.98750 0.92807 1.22927 0.84532 0.82213 0.93772 1.92964 1.91428 1.50417 1.83099 1.92961 1.58054 1.82847 1.84557 1.22201 1.02972 0.86157 0.95542 1.22742 1.02284 0.79884 0.98883 0.94855 0.93869 0.98111 0.93726 0.90612 0.90379 0.91240 0.91534 0.91731 0.90243 0.90998 0.90874 0.90260 0.93089 0.87400 0.87562 0.87285 0.91429 0.89995 0.92228 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.92 7.66 59.85 0.46 4.38 16 2 N -0.59 -14.31 2.94 -171.38 -0.50 -14.81 16 3 C -0.26 -6.93 9.61 -15.06 -0.14 -7.07 16 4 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 5 C 0.00 0.12 5.17 -17.43 -0.09 0.03 16 6 N -0.91 -25.95 10.58 55.49 0.59 -25.37 16 7 Si 0.91 21.57 29.56 -169.99 -5.03 16.55 16 8 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 9 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 C 0.17 3.40 3.42 -66.09 -0.23 3.17 16 12 H 0.08 1.50 7.93 -51.93 -0.41 1.09 16 13 C -0.15 -2.50 6.65 -24.58 -0.16 -2.66 16 14 C 0.10 1.31 5.14 -2.53 -0.01 1.29 16 15 N -0.61 -9.73 3.32 -170.52 -0.57 -10.30 16 16 C 0.53 8.52 7.22 -10.98 -0.08 8.44 16 17 O -0.55 -10.83 16.31 5.56 0.09 -10.74 16 18 C -0.10 -1.17 2.03 -91.69 -0.19 -1.35 16 19 H 0.10 1.16 7.85 -51.93 -0.41 0.75 16 20 C -0.12 -1.22 5.06 -26.61 -0.13 -1.36 16 21 C -0.11 -0.96 6.09 -26.65 -0.16 -1.13 16 22 C 0.04 0.36 3.95 -3.84 -0.02 0.34 16 23 N -0.53 -4.88 4.86 -234.68 -1.14 -6.02 16 24 C 0.01 0.07 6.01 -3.82 -0.02 0.05 16 25 C 0.22 1.54 5.14 37.16 0.19 1.73 16 26 F -0.20 -2.11 13.99 2.25 0.03 -2.07 16 27 F -0.20 -1.72 13.84 2.25 0.03 -1.69 16 28 C 0.06 0.69 3.61 -3.83 -0.01 0.67 16 29 C 0.09 1.61 6.41 -3.06 -0.02 1.60 16 30 H 0.03 0.87 7.32 -51.93 -0.38 0.49 16 31 H 0.04 1.14 7.33 -51.93 -0.38 0.76 16 32 H 0.00 0.01 6.30 -51.93 -0.33 -0.32 16 33 H 0.25 7.01 8.31 -40.82 -0.34 6.68 16 34 H 0.08 1.38 7.28 -51.93 -0.38 1.00 16 35 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.07 0.78 7.34 -51.93 -0.38 0.40 16 37 H 0.07 0.77 7.12 -51.93 -0.37 0.40 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.08 0.76 5.10 -51.92 -0.26 0.49 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.08 0.63 7.77 -51.93 -0.40 0.22 16 43 H 0.05 0.53 5.71 -51.93 -0.30 0.23 16 44 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.11 0.58 7.85 -51.93 -0.41 0.17 16 46 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.07 0.92 5.55 -51.93 -0.29 0.63 16 48 H 0.08 1.01 7.92 -51.93 -0.41 0.60 16 49 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 50 H 0.07 1.52 6.15 -51.93 -0.32 1.20 16 LS Contribution 377.56 15.07 5.69 5.69 Total: -1.00 -32.06 377.56 -9.36 -41.42 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -7.93 Total: -0.79 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: -0.62 Total: 8.13 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: -1.62 Total: -56.49 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.06 Total: -3.77 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.06 -9.36 -41.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972181685.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.165 kcal (2) G-P(sol) polarization free energy of solvation -32.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds