Wall clock time and date at job start Wed Apr 1 2020 03:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36945 * 119.99911 * 2 1 4 4 H 1.08001 * 119.99715 * 203.88138 * 3 2 1 5 5 C 1.38809 * 119.99882 * 23.88545 * 3 2 1 6 6 N 1.31614 * 120.00411 * 9.64656 * 5 3 2 7 7 Si 1.86799 * 119.99745 * 189.65184 * 5 3 2 8 8 H 1.48506 * 109.47250 * 359.97438 * 7 5 3 9 9 H 1.48501 * 109.47352 * 119.99514 * 7 5 3 10 10 H 1.48503 * 109.47205 * 239.99750 * 7 5 3 11 11 C 1.46497 * 120.00213 * 179.97438 * 2 1 3 12 12 H 1.09000 * 110.64676 * 178.31658 * 11 2 1 13 13 C 1.55161 * 110.71926 * 301.45226 * 11 2 1 14 14 C 1.54913 * 101.58031 * 154.03865 * 13 11 2 15 15 N 1.47421 * 104.83262 * 322.99537 * 14 13 11 16 16 C 1.34776 * 125.64699 * 204.08705 * 15 14 13 17 17 O 1.21275 * 120.00232 * 180.02562 * 16 15 14 18 18 C 1.50702 * 120.00183 * 0.02590 * 16 15 14 19 19 H 1.09007 * 109.50275 * 59.91866 * 18 16 15 20 20 C 1.53121 * 109.53624 * 299.82365 * 18 16 15 21 21 C 1.53121 * 109.16071 * 182.38141 * 20 18 16 22 22 C 1.53031 * 109.27671 * 57.65222 * 21 20 18 23 23 N 1.46838 * 109.52870 * 300.81859 * 22 21 20 24 24 C 1.46898 * 111.00471 * 185.84084 * 23 22 21 25 25 C 1.53003 * 109.46760 * 312.77186 * 24 23 22 26 26 F 1.39896 * 109.47640 * 305.14840 * 25 24 23 27 27 F 1.39904 * 109.47003 * 65.15355 * 25 24 23 28 28 C 1.46851 * 111.19773 * 61.73974 * 23 22 21 29 29 C 1.47021 * 108.70603 * 24.35394 * 15 14 13 30 30 H 1.09003 * 109.47118 * 275.36631 * 1 2 3 31 31 H 1.09000 * 109.47033 * 35.36836 * 1 2 3 32 32 H 1.08993 * 109.46820 * 155.36347 * 1 2 3 33 33 H 0.96999 * 120.00183 * 180.02562 * 6 5 3 34 34 H 1.09001 * 110.99875 * 35.97076 * 13 11 2 35 35 H 1.08992 * 111.03928 * 272.13030 * 13 11 2 36 36 H 1.08996 * 110.36615 * 204.14860 * 14 13 11 37 37 H 1.09003 * 110.45363 * 81.87905 * 14 13 11 38 38 H 1.08998 * 109.52389 * 302.28832 * 20 18 16 39 39 H 1.09008 * 109.52120 * 62.41533 * 20 18 16 40 40 H 1.08998 * 109.50147 * 177.59391 * 21 20 18 41 41 H 1.08999 * 109.50475 * 297.66945 * 21 20 18 42 42 H 1.09006 * 109.45771 * 180.80186 * 22 21 20 43 43 H 1.08998 * 109.46305 * 60.84031 * 22 21 20 44 44 H 1.08993 * 109.47040 * 72.77324 * 24 23 22 45 45 H 1.09002 * 109.47054 * 192.77522 * 24 23 22 46 46 H 1.09000 * 109.46600 * 185.14424 * 25 24 23 47 47 H 1.09004 * 109.45950 * 58.27766 * 28 23 22 48 48 H 1.08996 * 109.46658 * 178.25556 * 28 23 22 49 49 H 1.09004 * 109.88102 * 118.12509 * 29 15 14 50 50 H 1.08998 * 109.88154 * 239.29527 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1603 1.2260 -0.3787 5 6 1.5448 2.3366 0.4868 6 7 0.3935 2.2576 1.1197 7 14 2.3647 3.9973 0.2434 8 1 3.6416 3.8158 -0.4928 9 1 1.4647 4.8841 -0.5369 10 1 2.6399 4.6122 1.5668 11 6 2.1975 -1.2687 0.0006 12 1 3.2726 -1.0917 -0.0295 13 6 1.8162 -2.1222 1.2390 14 6 2.1053 -3.5562 0.7293 15 7 1.6993 -3.5420 -0.6878 16 6 1.3360 -4.6193 -1.4116 17 8 1.0201 -4.4896 -2.5753 18 6 1.3223 -5.9852 -0.7749 19 1 0.6301 -5.9872 0.0672 20 6 2.7290 -6.3341 -0.2811 21 6 2.7181 -7.7465 0.3102 22 6 2.2315 -8.7351 -0.7518 23 7 0.8819 -8.3587 -1.1910 24 6 0.3274 -9.3632 -2.1083 25 6 1.3710 -9.7151 -3.1704 26 9 1.7976 -8.5466 -3.8104 27 9 2.4649 -10.3388 -2.5607 28 6 0.8761 -7.0249 -1.8054 29 6 1.7626 -2.1590 -1.1826 30 1 -0.3633 0.0961 1.0232 31 1 -0.3633 0.8380 -0.5948 32 1 -0.3633 -0.9341 -0.4284 33 1 -0.0294 3.0617 1.4595 34 1 0.7618 -2.0009 1.4873 35 1 2.4473 -1.8764 2.0929 36 1 1.5140 -4.2831 1.2861 37 1 3.1674 -3.7849 0.8174 38 1 3.4285 -6.2942 -1.1161 39 1 3.0340 -5.6202 0.4841 40 1 3.7261 -8.0171 0.6246 41 1 2.0486 -7.7760 1.1697 42 1 2.2091 -9.7398 -0.3295 43 1 2.9099 -8.7149 -1.6047 44 1 0.0625 -10.2598 -1.5481 45 1 -0.5625 -8.9611 -2.5926 46 1 0.9299 -10.3906 -3.9034 47 1 1.5608 -7.0127 -2.6534 48 1 -0.1309 -6.7873 -2.1482 49 1 2.4910 -2.0873 -1.9904 50 1 0.7804 -1.8470 -1.5375 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972181685.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:58 Heat of formation + Delta-G solvation = -116.587799 kcal Electronic energy + Delta-G solvation = -32085.003675 eV Core-core repulsion = 27590.016312 eV Total energy + Delta-G solvation = -4494.987363 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.13043 -48.02913 -41.52751 -39.70208 -38.65466 -36.59018 -35.07980 -33.40299 -32.10494 -31.23159 -30.12734 -29.21303 -28.08708 -25.99688 -25.28455 -24.29619 -23.69499 -23.04499 -21.19479 -20.87362 -20.19923 -18.95976 -18.63573 -18.39865 -18.13255 -17.44882 -17.34074 -16.72245 -16.54830 -16.25419 -15.82512 -15.52240 -15.19205 -15.05580 -14.89162 -14.73879 -14.64884 -14.43635 -14.30911 -14.26940 -13.91057 -13.73594 -13.48098 -13.21302 -13.17321 -12.97873 -12.84370 -12.79392 -12.60720 -12.50781 -12.36391 -12.28451 -12.17747 -12.03517 -11.84559 -11.78660 -11.64225 -11.47388 -11.31795 -10.76861 -10.65329 -9.65316 -9.27141 -8.80839 -7.83906 -5.34595 1.46619 1.48511 1.57955 1.58426 1.90385 2.50148 2.68355 3.02946 3.29180 3.38469 3.46880 3.56499 3.58441 3.70861 3.85005 3.86816 3.88231 4.00107 4.17518 4.21959 4.27976 4.31918 4.36812 4.43453 4.51173 4.61172 4.65635 4.71290 4.72653 4.75268 4.78837 4.91276 4.92562 4.97628 5.01057 5.10457 5.14566 5.21105 5.26666 5.34507 5.39613 5.40498 5.63765 5.69417 5.90089 5.98013 6.31281 6.55266 7.10131 7.13868 7.82636 8.27919 9.19515 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.029667 B = 0.002191 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.571288 B =12776.890010 C =13036.204267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.604 5.604 3 C -0.265 4.265 4 H 0.074 0.926 5 C -0.050 4.050 6 N -0.937 5.937 7 Si 0.970 3.030 8 H -0.266 1.266 9 H -0.295 1.295 10 H -0.289 1.289 11 C 0.167 3.833 12 H 0.082 0.918 13 C -0.142 4.142 14 C 0.107 3.893 15 N -0.610 5.610 16 C 0.525 3.475 17 O -0.592 6.592 18 C -0.087 4.087 19 H 0.118 0.882 20 C -0.115 4.115 21 C -0.109 4.109 22 C 0.041 3.959 23 N -0.531 5.531 24 C 0.008 3.992 25 C 0.212 3.788 26 F -0.223 7.223 27 F -0.212 7.212 28 C 0.066 3.934 29 C 0.098 3.902 30 H 0.012 0.988 31 H 0.012 0.988 32 H 0.019 0.981 33 H 0.248 0.752 34 H 0.057 0.943 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.048 0.952 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.033 0.967 44 H 0.135 0.865 45 H 0.114 0.886 46 H 0.147 0.853 47 H 0.044 0.956 48 H 0.070 0.930 49 H 0.052 0.948 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.753 -29.065 -1.024 29.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.325 5.325 3 C -0.395 4.395 4 H 0.092 0.908 5 C -0.246 4.246 6 N -0.583 5.583 7 Si 0.799 3.201 8 H -0.190 1.190 9 H -0.222 1.222 10 H -0.216 1.216 11 C 0.058 3.942 12 H 0.100 0.900 13 C -0.182 4.182 14 C -0.015 4.015 15 N -0.342 5.342 16 C 0.315 3.685 17 O -0.473 6.473 18 C -0.109 4.109 19 H 0.136 0.864 20 C -0.153 4.153 21 C -0.147 4.147 22 C -0.086 4.086 23 N -0.253 5.253 24 C -0.121 4.121 25 C 0.157 3.843 26 F -0.204 7.204 27 F -0.193 7.193 28 C -0.063 4.063 29 C -0.028 4.028 30 H 0.031 0.969 31 H 0.030 0.970 32 H 0.037 0.963 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.108 0.892 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.066 0.934 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.102 0.898 42 H 0.112 0.888 43 H 0.051 0.949 44 H 0.152 0.848 45 H 0.132 0.868 46 H 0.165 0.835 47 H 0.062 0.938 48 H 0.088 0.912 49 H 0.070 0.930 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.213 -28.876 -1.186 28.985 hybrid contribution 0.587 1.637 -1.176 2.099 sum 2.801 -27.239 -2.362 27.484 Atomic orbital electron populations 1.20447 0.83021 0.95042 0.97771 1.44020 1.01856 1.01096 1.85534 1.19593 0.98991 0.86715 1.34173 0.90844 1.25811 0.98346 1.01923 0.98472 1.70221 1.19140 1.27732 1.41239 0.85158 0.78055 0.79884 0.77043 1.19048 1.22175 1.21631 1.21459 0.96013 0.84688 0.92030 0.89975 1.23229 1.01942 0.94024 0.99011 1.22616 1.01585 0.97747 0.79507 1.48541 1.65787 1.06419 1.13500 1.20954 0.75584 0.86389 0.85592 1.90664 1.50879 1.86850 1.18930 1.21211 1.01129 0.88755 0.99776 0.86448 1.21725 0.93110 0.99353 1.01128 1.21602 1.02604 0.92260 0.98244 1.22582 0.87902 1.00131 0.98030 1.62016 1.23582 1.01192 1.38548 1.23616 0.96750 0.99019 0.92730 1.23376 0.84162 0.81964 0.94770 1.92920 1.91745 1.52147 1.83629 1.92938 1.58714 1.82860 1.84820 1.22016 1.01560 0.87806 0.94875 1.22370 1.00359 0.81718 0.98324 0.96924 0.96950 0.96284 0.94237 0.92417 0.89203 0.88058 0.88641 0.93361 0.88963 0.89422 0.89753 0.88791 0.94854 0.84755 0.86758 0.83538 0.93766 0.91191 0.92995 0.93724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.18 7.66 127.77 0.98 10.16 16 2 N -0.60 -29.82 2.94 -696.14 -2.05 -31.87 16 3 C -0.26 -14.30 9.61 84.03 0.81 -13.49 16 4 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 5 C -0.05 -2.79 5.17 84.86 0.44 -2.35 16 6 N -0.94 -54.92 10.58 21.65 0.23 -54.69 16 7 Si 0.97 44.78 29.56 68.60 2.03 46.81 16 8 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 9 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 10 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 11 C 0.17 6.46 3.42 46.18 0.16 6.62 16 12 H 0.08 3.10 7.93 -2.39 -0.02 3.08 16 13 C -0.14 -4.44 6.65 31.99 0.21 -4.23 16 14 C 0.11 2.49 5.14 86.86 0.45 2.94 16 15 N -0.61 -18.74 3.32 -811.78 -2.70 -21.44 16 16 C 0.52 16.58 7.22 87.66 0.63 17.21 16 17 O -0.59 -23.97 16.31 -3.01 -0.05 -24.02 16 18 C -0.09 -1.95 2.03 -11.49 -0.02 -1.97 16 19 H 0.12 2.30 7.85 -2.38 -0.02 2.28 16 20 C -0.12 -2.05 5.06 30.68 0.16 -1.90 16 21 C -0.11 -1.47 6.09 30.65 0.19 -1.29 16 22 C 0.04 0.62 3.95 86.33 0.34 0.96 16 23 N -0.53 -8.63 4.86 -896.40 -4.35 -12.99 16 24 C 0.01 0.08 6.01 86.30 0.52 0.60 16 25 C 0.21 2.60 5.14 71.98 0.37 2.97 16 26 F -0.22 -4.73 13.99 44.97 0.63 -4.10 16 27 F -0.21 -3.25 13.84 44.97 0.62 -2.62 16 28 C 0.07 1.49 3.61 86.32 0.31 1.80 16 29 C 0.10 3.67 6.41 86.73 0.56 4.23 16 30 H 0.01 0.68 7.32 -2.39 -0.02 0.66 16 31 H 0.01 0.66 7.33 -2.39 -0.02 0.64 16 32 H 0.02 0.86 6.30 -2.39 -0.02 0.85 16 33 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 34 H 0.06 2.03 7.28 -2.39 -0.02 2.02 16 35 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.10 1.81 7.34 -2.39 -0.02 1.79 16 37 H 0.10 1.77 7.12 -2.39 -0.02 1.75 16 38 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.09 1.39 5.10 -2.38 -0.01 1.37 16 40 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.09 1.18 7.77 -2.38 -0.02 1.17 16 43 H 0.03 0.64 5.71 -2.39 -0.01 0.63 16 44 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.11 1.03 7.85 -2.39 -0.02 1.01 16 46 H 0.15 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.04 1.22 5.55 -2.38 -0.01 1.21 16 48 H 0.07 1.72 7.92 -2.39 -0.02 1.70 16 49 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 50 H 0.04 1.92 6.15 -2.39 -0.01 1.91 16 Total: -1.00 -72.46 377.56 1.40 -71.07 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 0.94 Total: 11.59 kcal Atomic # 6 Polarization: 16.17 SS G_CDS: 6.09 Total: 22.26 kcal Atomic # 7 Polarization: -112.12 SS G_CDS: -8.87 Total: -120.99 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.05 Total: -24.02 kcal Atomic # 9 Polarization: -7.97 SS G_CDS: 1.25 Total: -6.72 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -72.46 1.40 -71.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972181685.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.518 kcal (2) G-P(sol) polarization free energy of solvation -72.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds