Wall clock time and date at job start Wed Apr 1 2020 03:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36946 * 119.99896 * 2 1 4 4 H 1.07999 * 119.99999 * 203.89747 * 3 2 1 5 5 C 1.38808 * 119.99900 * 23.89962 * 3 2 1 6 6 N 1.31619 * 120.00343 * 9.61696 * 5 3 2 7 7 Si 1.86806 * 119.99899 * 189.61991 * 5 3 2 8 8 H 1.48502 * 109.46913 * 59.99714 * 7 5 3 9 9 H 1.48492 * 109.47122 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46914 * 299.99807 * 7 5 3 11 11 C 1.46496 * 120.00048 * 180.02562 * 2 1 3 12 12 H 1.09006 * 110.64066 * 179.29881 * 11 2 1 13 13 C 1.55154 * 110.72136 * 56.15640 * 11 2 1 14 14 C 1.54907 * 101.58329 * 205.95660 * 13 11 2 15 15 N 1.47429 * 104.83228 * 37.00921 * 14 13 11 16 16 C 1.34767 * 125.65127 * 155.83609 * 15 14 13 17 17 O 1.21286 * 120.00245 * 180.02562 * 16 15 14 18 18 C 1.50710 * 120.00099 * 0.02562 * 16 15 14 19 19 H 1.08997 * 109.49811 * 299.92540 * 18 16 15 20 20 C 1.53116 * 109.50118 * 59.99978 * 18 16 15 21 21 C 1.53118 * 109.16163 * 177.60138 * 20 18 16 22 22 C 1.53038 * 109.27389 * 302.34263 * 21 20 18 23 23 N 1.46854 * 109.52342 * 59.17950 * 22 21 20 24 24 C 1.46895 * 110.99904 * 174.16011 * 23 22 21 25 25 C 1.53005 * 109.47372 * 76.95423 * 24 23 22 26 26 F 1.39900 * 109.47244 * 305.12971 * 25 24 23 27 27 F 1.39896 * 109.47012 * 65.12627 * 25 24 23 28 28 C 1.46842 * 111.19708 * 298.25851 * 23 22 21 29 29 C 1.47023 * 108.69954 * 335.87284 * 15 14 13 30 30 H 1.09004 * 109.46956 * 275.34718 * 1 2 3 31 31 H 1.08998 * 109.47424 * 35.34473 * 1 2 3 32 32 H 1.08996 * 109.47367 * 155.34908 * 1 2 3 33 33 H 0.96998 * 120.00165 * 180.02562 * 6 5 3 34 34 H 1.08997 * 111.00162 * 324.03235 * 13 11 2 35 35 H 1.09001 * 111.00592 * 87.87983 * 13 11 2 36 36 H 1.09003 * 110.36641 * 155.84511 * 14 13 11 37 37 H 1.08998 * 110.36655 * 278.16955 * 14 13 11 38 38 H 1.09009 * 109.52535 * 297.50283 * 20 18 16 39 39 H 1.08999 * 109.52781 * 57.62633 * 20 18 16 40 40 H 1.08995 * 109.50477 * 62.28132 * 21 20 18 41 41 H 1.08995 * 109.50265 * 182.36750 * 21 20 18 42 42 H 1.08998 * 109.46515 * 179.19564 * 22 21 20 43 43 H 1.09004 * 109.46461 * 299.16398 * 22 21 20 44 44 H 1.08999 * 109.47364 * 196.95616 * 24 23 22 45 45 H 1.09002 * 109.47670 * 316.95597 * 24 23 22 46 46 H 1.08994 * 109.47349 * 185.12686 * 25 24 23 47 47 H 1.09001 * 109.46301 * 301.72429 * 28 23 22 48 48 H 1.08998 * 109.46275 * 181.76015 * 28 23 22 49 49 H 1.09007 * 109.87900 * 241.64054 * 29 15 14 50 50 H 1.08996 * 109.88517 * 120.47902 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1602 1.2261 -0.3789 5 6 1.5449 2.3366 0.4870 6 7 0.3934 2.2575 1.1197 7 14 2.3652 3.9973 0.2445 8 1 2.5249 4.2630 -1.2078 9 1 1.5229 5.0588 0.8518 10 1 3.6996 3.9901 0.8961 11 6 2.1975 -1.2687 -0.0006 12 1 3.2730 -1.0914 -0.0130 13 6 1.7721 -2.1477 -1.2062 14 6 2.0800 -3.5708 -0.6776 15 7 1.7254 -3.5270 0.7527 16 6 1.3875 -4.5886 1.5111 17 8 1.1130 -4.4344 2.6824 18 6 1.3508 -5.9674 0.9038 19 1 0.6273 -5.9868 0.0887 20 6 2.7383 -6.3255 0.3642 21 6 2.7072 -7.7499 -0.1967 22 6 2.2629 -8.7165 0.9035 23 7 0.9302 -8.3319 1.3858 24 6 0.4127 -9.3175 2.3443 25 6 1.0944 -9.1178 3.6995 26 9 2.4827 -9.1714 3.5355 27 9 0.7346 -7.8715 4.2233 28 6 0.9458 -6.9856 1.9720 29 6 1.8006 -2.1333 1.2145 30 1 -0.3633 0.0958 1.0232 31 1 -0.3634 0.8382 -0.5945 32 1 -0.3634 -0.9340 -0.4286 33 1 -0.0294 3.0616 1.4597 34 1 0.7094 -2.0313 -1.4188 35 1 2.3723 -1.9197 -2.0871 36 1 1.4691 -4.3090 -1.1974 37 1 3.1387 -3.7998 -0.7992 38 1 3.0124 -5.6282 -0.4275 39 1 3.4692 -6.2664 1.1707 40 1 2.0049 -7.7981 -1.0288 41 1 3.7027 -8.0260 -0.5442 42 1 2.2259 -9.7298 0.5035 43 1 2.9732 -8.6779 1.7294 44 1 -0.6635 -9.1854 2.4560 45 1 0.6192 -10.3233 1.9786 46 1 0.7788 -9.9046 4.3845 47 1 1.6622 -6.9552 2.7929 48 1 -0.0478 -6.7418 2.3481 49 1 2.5546 -2.0421 1.9965 50 1 0.8295 -1.8156 1.5942 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972181686.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:02 Heat of formation + Delta-G solvation = -94.613460 kcal Electronic energy + Delta-G solvation = -32267.066563 eV Core-core repulsion = 27773.032079 eV Total energy + Delta-G solvation = -4494.034484 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.42697 -47.30279 -40.29522 -38.63744 -37.23444 -34.85647 -34.20457 -31.70435 -31.08903 -29.69046 -29.34665 -27.80993 -26.03247 -24.74278 -24.48877 -22.84407 -22.53140 -22.16604 -20.30735 -19.30300 -19.00074 -17.89206 -17.66319 -17.10161 -16.94276 -16.45533 -15.95442 -15.53012 -15.24583 -15.10193 -14.74681 -14.59378 -14.00439 -13.86590 -13.78153 -13.53643 -13.47133 -13.27889 -13.12183 -12.94957 -12.55337 -12.51618 -12.35724 -12.17682 -12.05845 -11.89360 -11.78886 -11.58593 -11.28260 -11.07858 -10.91407 -10.83292 -10.75194 -10.55628 -10.47496 -10.42286 -10.27455 -9.87411 -9.82143 -9.40810 -8.56954 -8.53819 -8.23290 -6.79040 -5.74349 -3.24106 2.91589 3.11049 3.37944 3.41883 3.43796 3.44731 3.64198 3.94445 4.13812 4.33683 4.46464 4.50213 4.61683 4.74816 4.90415 4.94556 5.02861 5.06642 5.19081 5.24872 5.30585 5.31177 5.40093 5.46639 5.54144 5.56824 5.64791 5.71132 5.72549 5.79707 5.86226 5.91521 6.02630 6.04552 6.13599 6.36908 6.40312 6.58246 6.63787 6.68849 6.73011 6.85661 6.89758 7.37129 7.74188 7.79445 7.89071 8.36616 8.48347 9.20328 9.82065 10.31502 11.29525 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.023818 B = 0.002370 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.309547 B =11811.731615 C =12372.878269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.586 5.586 3 C -0.262 4.262 4 H 0.069 0.931 5 C 0.005 3.995 6 N -0.905 5.905 7 Si 0.908 3.092 8 H -0.284 1.284 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.173 3.827 12 H 0.077 0.923 13 C -0.155 4.155 14 C 0.101 3.899 15 N -0.611 5.611 16 C 0.528 3.472 17 O -0.543 6.543 18 C -0.099 4.099 19 H 0.101 0.899 20 C -0.120 4.120 21 C -0.112 4.112 22 C 0.034 3.966 23 N -0.531 5.531 24 C 0.011 3.989 25 C 0.220 3.780 26 F -0.203 7.203 27 F -0.193 7.193 28 C 0.065 3.935 29 C 0.087 3.913 30 H 0.032 0.968 31 H 0.043 0.957 32 H 0.001 0.999 33 H 0.254 0.746 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.058 0.942 44 H 0.108 0.892 45 H 0.104 0.896 46 H 0.109 0.891 47 H 0.061 0.939 48 H 0.086 0.914 49 H 0.058 0.942 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.004 -26.900 -2.461 27.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.306 5.306 3 C -0.391 4.391 4 H 0.087 0.913 5 C -0.194 4.194 6 N -0.549 5.549 7 Si 0.738 3.262 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.063 3.937 12 H 0.095 0.905 13 C -0.195 4.195 14 C -0.022 4.022 15 N -0.345 5.345 16 C 0.315 3.685 17 O -0.421 6.421 18 C -0.120 4.120 19 H 0.119 0.881 20 C -0.158 4.158 21 C -0.150 4.150 22 C -0.093 4.093 23 N -0.254 5.254 24 C -0.119 4.119 25 C 0.164 3.836 26 F -0.185 7.185 27 F -0.175 7.175 28 C -0.063 4.063 29 C -0.037 4.037 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.019 0.981 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.076 0.924 44 H 0.126 0.874 45 H 0.122 0.878 46 H 0.126 0.874 47 H 0.079 0.921 48 H 0.105 0.895 49 H 0.077 0.923 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.417 -26.634 -2.112 26.755 hybrid contribution 0.911 1.015 0.725 1.545 sum 2.328 -25.619 -1.386 25.761 Atomic orbital electron populations 1.20807 0.82407 0.95454 0.99647 1.43897 1.01907 0.99868 1.84976 1.19175 0.98994 0.85502 1.35456 0.91279 1.25112 0.97597 0.98767 0.97893 1.70053 1.17704 1.27632 1.39541 0.86289 0.78625 0.83521 0.77776 1.21002 1.21609 1.20872 1.21346 0.96320 0.85945 0.90125 0.90459 1.23374 1.02805 0.93251 1.00033 1.22397 0.99575 0.98965 0.81260 1.48529 1.67108 1.07821 1.11006 1.20142 0.76949 0.85335 0.86068 1.90711 1.49272 1.85788 1.16315 1.21246 0.99453 0.91752 0.99573 0.88112 1.21725 0.95358 0.97410 1.01289 1.21554 1.01420 0.93996 0.98043 1.22506 0.89463 0.98978 0.98354 1.62002 1.25351 1.02010 1.36061 1.23421 1.01651 0.98711 0.88079 1.22913 0.77012 0.84552 0.99083 1.92909 1.32572 1.96664 1.96349 1.93049 1.91234 1.44882 1.88287 1.22265 1.03185 0.85912 0.94907 1.22880 1.02330 0.79040 0.99476 0.94982 0.93777 0.98102 0.93548 0.90469 0.90464 0.91267 0.91573 0.90288 0.91715 0.90929 0.91032 0.90750 0.92377 0.87353 0.87762 0.87399 0.92076 0.89546 0.92342 0.90971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.95 7.68 59.85 0.46 4.41 16 2 N -0.59 -14.37 2.94 -171.39 -0.50 -14.88 16 3 C -0.26 -7.05 9.61 -15.06 -0.14 -7.20 16 4 H 0.07 1.80 7.83 -52.49 -0.41 1.38 16 5 C 0.01 0.14 5.17 -17.43 -0.09 0.05 16 6 N -0.91 -26.37 10.58 55.49 0.59 -25.78 16 7 Si 0.91 21.68 29.56 -169.99 -5.03 16.65 16 8 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 9 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 C 0.17 3.43 3.43 -66.10 -0.23 3.20 16 12 H 0.08 1.51 7.94 -51.93 -0.41 1.10 16 13 C -0.15 -2.42 6.59 -24.59 -0.16 -2.58 16 14 C 0.10 1.32 5.14 -2.53 -0.01 1.31 16 15 N -0.61 -10.14 3.32 -170.52 -0.57 -10.70 16 16 C 0.53 8.93 7.22 -10.98 -0.08 8.86 16 17 O -0.54 -11.46 16.31 5.55 0.09 -11.37 16 18 C -0.10 -1.24 2.04 -91.69 -0.19 -1.42 16 19 H 0.10 1.18 7.85 -51.93 -0.41 0.77 16 20 C -0.12 -1.24 5.06 -26.61 -0.13 -1.37 16 21 C -0.11 -0.91 6.09 -26.65 -0.16 -1.08 16 22 C 0.03 0.29 5.03 -3.83 -0.02 0.27 16 23 N -0.53 -4.98 4.86 -234.67 -1.14 -6.12 16 24 C 0.01 0.07 6.01 -3.82 -0.02 0.05 16 25 C 0.22 1.72 5.14 37.16 0.19 1.91 16 26 F -0.20 -2.02 13.99 2.25 0.03 -1.99 16 27 F -0.19 -2.30 13.84 2.25 0.03 -2.27 16 28 C 0.06 0.81 2.53 -3.84 -0.01 0.80 16 29 C 0.09 1.74 6.51 -3.07 -0.02 1.72 16 30 H 0.03 0.87 7.26 -51.93 -0.38 0.49 16 31 H 0.04 1.16 7.32 -51.93 -0.38 0.78 16 32 H 0.00 0.01 6.21 -51.93 -0.32 -0.31 16 33 H 0.25 7.21 8.31 -40.82 -0.34 6.88 16 34 H 0.08 1.30 6.21 -51.93 -0.32 0.98 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.07 0.76 7.34 -51.93 -0.38 0.38 16 37 H 0.07 0.75 7.13 -51.93 -0.37 0.38 16 38 H 0.08 0.75 5.09 -51.92 -0.26 0.49 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.50 7.95 -51.93 -0.41 0.09 16 43 H 0.06 0.56 5.61 -51.93 -0.29 0.27 16 44 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.10 0.44 7.85 -51.93 -0.41 0.03 16 46 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.06 0.89 5.65 -51.93 -0.29 0.60 16 48 H 0.09 1.19 7.74 -51.93 -0.40 0.79 16 49 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 50 H 0.07 1.66 7.03 -51.93 -0.37 1.29 16 LS Contribution 377.26 15.07 5.69 5.69 Total: -1.00 -32.99 377.26 -9.35 -42.34 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -7.91 Total: -0.51 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: -0.62 Total: 8.94 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: -1.62 Total: -57.47 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.09 Total: -11.37 kcal Atomic # 9 Polarization: -4.32 SS G_CDS: 0.06 Total: -4.26 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.99 -9.35 -42.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972181686.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.273 kcal (2) G-P(sol) polarization free energy of solvation -32.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds