Wall clock time and date at job start Wed Apr 1 2020 03:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36946 * 119.99896 * 2 1 4 4 H 1.07999 * 119.99999 * 203.89747 * 3 2 1 5 5 C 1.38808 * 119.99900 * 23.89962 * 3 2 1 6 6 N 1.31619 * 120.00343 * 9.61696 * 5 3 2 7 7 Si 1.86806 * 119.99899 * 189.61991 * 5 3 2 8 8 H 1.48502 * 109.46913 * 59.99714 * 7 5 3 9 9 H 1.48492 * 109.47122 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46914 * 299.99807 * 7 5 3 11 11 C 1.46496 * 120.00048 * 180.02562 * 2 1 3 12 12 H 1.09006 * 110.64066 * 179.29881 * 11 2 1 13 13 C 1.55154 * 110.72136 * 56.15640 * 11 2 1 14 14 C 1.54907 * 101.58329 * 205.95660 * 13 11 2 15 15 N 1.47429 * 104.83228 * 37.00921 * 14 13 11 16 16 C 1.34767 * 125.65127 * 155.83609 * 15 14 13 17 17 O 1.21286 * 120.00245 * 180.02562 * 16 15 14 18 18 C 1.50710 * 120.00099 * 0.02562 * 16 15 14 19 19 H 1.08997 * 109.49811 * 299.92540 * 18 16 15 20 20 C 1.53116 * 109.50118 * 59.99978 * 18 16 15 21 21 C 1.53118 * 109.16163 * 177.60138 * 20 18 16 22 22 C 1.53038 * 109.27389 * 302.34263 * 21 20 18 23 23 N 1.46854 * 109.52342 * 59.17950 * 22 21 20 24 24 C 1.46895 * 110.99904 * 174.16011 * 23 22 21 25 25 C 1.53005 * 109.47372 * 76.95423 * 24 23 22 26 26 F 1.39900 * 109.47244 * 305.12971 * 25 24 23 27 27 F 1.39896 * 109.47012 * 65.12627 * 25 24 23 28 28 C 1.46842 * 111.19708 * 298.25851 * 23 22 21 29 29 C 1.47023 * 108.69954 * 335.87284 * 15 14 13 30 30 H 1.09004 * 109.46956 * 275.34718 * 1 2 3 31 31 H 1.08998 * 109.47424 * 35.34473 * 1 2 3 32 32 H 1.08996 * 109.47367 * 155.34908 * 1 2 3 33 33 H 0.96998 * 120.00165 * 180.02562 * 6 5 3 34 34 H 1.08997 * 111.00162 * 324.03235 * 13 11 2 35 35 H 1.09001 * 111.00592 * 87.87983 * 13 11 2 36 36 H 1.09003 * 110.36641 * 155.84511 * 14 13 11 37 37 H 1.08998 * 110.36655 * 278.16955 * 14 13 11 38 38 H 1.09009 * 109.52535 * 297.50283 * 20 18 16 39 39 H 1.08999 * 109.52781 * 57.62633 * 20 18 16 40 40 H 1.08995 * 109.50477 * 62.28132 * 21 20 18 41 41 H 1.08995 * 109.50265 * 182.36750 * 21 20 18 42 42 H 1.08998 * 109.46515 * 179.19564 * 22 21 20 43 43 H 1.09004 * 109.46461 * 299.16398 * 22 21 20 44 44 H 1.08999 * 109.47364 * 196.95616 * 24 23 22 45 45 H 1.09002 * 109.47670 * 316.95597 * 24 23 22 46 46 H 1.08994 * 109.47349 * 185.12686 * 25 24 23 47 47 H 1.09001 * 109.46301 * 301.72429 * 28 23 22 48 48 H 1.08998 * 109.46275 * 181.76015 * 28 23 22 49 49 H 1.09007 * 109.87900 * 241.64054 * 29 15 14 50 50 H 1.08996 * 109.88517 * 120.47902 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1602 1.2261 -0.3789 5 6 1.5449 2.3366 0.4870 6 7 0.3934 2.2575 1.1197 7 14 2.3652 3.9973 0.2445 8 1 2.5249 4.2630 -1.2078 9 1 1.5229 5.0588 0.8518 10 1 3.6996 3.9901 0.8961 11 6 2.1975 -1.2687 -0.0006 12 1 3.2730 -1.0914 -0.0130 13 6 1.7721 -2.1477 -1.2062 14 6 2.0800 -3.5708 -0.6776 15 7 1.7254 -3.5270 0.7527 16 6 1.3875 -4.5886 1.5111 17 8 1.1130 -4.4344 2.6824 18 6 1.3508 -5.9674 0.9038 19 1 0.6273 -5.9868 0.0887 20 6 2.7383 -6.3255 0.3642 21 6 2.7072 -7.7499 -0.1967 22 6 2.2629 -8.7165 0.9035 23 7 0.9302 -8.3319 1.3858 24 6 0.4127 -9.3175 2.3443 25 6 1.0944 -9.1178 3.6995 26 9 2.4827 -9.1714 3.5355 27 9 0.7346 -7.8715 4.2233 28 6 0.9458 -6.9856 1.9720 29 6 1.8006 -2.1333 1.2145 30 1 -0.3633 0.0958 1.0232 31 1 -0.3634 0.8382 -0.5945 32 1 -0.3634 -0.9340 -0.4286 33 1 -0.0294 3.0616 1.4597 34 1 0.7094 -2.0313 -1.4188 35 1 2.3723 -1.9197 -2.0871 36 1 1.4691 -4.3090 -1.1974 37 1 3.1387 -3.7998 -0.7992 38 1 3.0124 -5.6282 -0.4275 39 1 3.4692 -6.2664 1.1707 40 1 2.0049 -7.7981 -1.0288 41 1 3.7027 -8.0260 -0.5442 42 1 2.2259 -9.7298 0.5035 43 1 2.9732 -8.6779 1.7294 44 1 -0.6635 -9.1854 2.4560 45 1 0.6192 -10.3233 1.9786 46 1 0.7788 -9.9046 4.3845 47 1 1.6622 -6.9552 2.7929 48 1 -0.0478 -6.7418 2.3481 49 1 2.5546 -2.0421 1.9965 50 1 0.8295 -1.8156 1.5942 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972181686.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:01 Heat of formation + Delta-G solvation = -117.227977 kcal Electronic energy + Delta-G solvation = -32268.047202 eV Core-core repulsion = 27773.032079 eV Total energy + Delta-G solvation = -4495.015123 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.13505 -48.04259 -41.52147 -39.69528 -38.66304 -36.59073 -35.07747 -33.42329 -32.10606 -31.17949 -30.11307 -29.25656 -28.08144 -25.97968 -25.30289 -24.36326 -23.63317 -23.01685 -21.14550 -20.88665 -20.26511 -18.97102 -18.65002 -18.37448 -18.12061 -17.38664 -17.29708 -16.78348 -16.50946 -16.30864 -15.86877 -15.54268 -15.33324 -15.03843 -14.80217 -14.70988 -14.64655 -14.41172 -14.30834 -14.22294 -13.84207 -13.69108 -13.49025 -13.28138 -13.23093 -13.10663 -12.75641 -12.71233 -12.55471 -12.49974 -12.41438 -12.30828 -12.18182 -12.11752 -11.83300 -11.79440 -11.62834 -11.43073 -11.28187 -10.76006 -10.64130 -9.66118 -9.27390 -8.81555 -7.83775 -5.36154 1.47225 1.49507 1.56168 1.58224 1.90682 2.50140 2.68121 3.04890 3.28513 3.40082 3.46497 3.56587 3.58100 3.72764 3.83846 3.85094 3.86110 4.02179 4.19969 4.23858 4.27681 4.31539 4.35695 4.44938 4.51673 4.61505 4.66139 4.70494 4.73603 4.78687 4.82724 4.88562 4.92716 4.98367 5.03445 5.11459 5.17011 5.20330 5.26017 5.31146 5.42661 5.43983 5.63473 5.69693 5.87965 6.01276 6.30712 6.56533 7.10645 7.13826 7.82516 8.27860 9.18809 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.023818 B = 0.002370 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.309547 B =11811.731615 C =12372.878269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.602 5.602 3 C -0.267 4.267 4 H 0.080 0.920 5 C -0.055 4.055 6 N -0.942 5.942 7 Si 0.974 3.026 8 H -0.273 1.273 9 H -0.298 1.298 10 H -0.276 1.276 11 C 0.166 3.834 12 H 0.083 0.917 13 C -0.141 4.141 14 C 0.105 3.895 15 N -0.610 5.610 16 C 0.520 3.480 17 O -0.596 6.596 18 C -0.088 4.088 19 H 0.120 0.880 20 C -0.116 4.116 21 C -0.107 4.107 22 C 0.031 3.969 23 N -0.530 5.530 24 C 0.010 3.990 25 C 0.207 3.793 26 F -0.217 7.217 27 F -0.223 7.223 28 C 0.076 3.924 29 C 0.098 3.902 30 H -0.006 1.006 31 H 0.020 0.980 32 H 0.030 0.970 33 H 0.248 0.752 34 H 0.066 0.934 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.045 0.955 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.100 0.900 43 H 0.042 0.958 44 H 0.117 0.883 45 H 0.138 0.862 46 H 0.149 0.851 47 H 0.032 0.968 48 H 0.064 0.936 49 H 0.038 0.962 50 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.342 -29.808 -5.417 30.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.323 5.323 3 C -0.397 4.397 4 H 0.097 0.903 5 C -0.250 4.250 6 N -0.588 5.588 7 Si 0.802 3.198 8 H -0.198 1.198 9 H -0.225 1.225 10 H -0.201 1.201 11 C 0.058 3.942 12 H 0.101 0.899 13 C -0.180 4.180 14 C -0.017 4.017 15 N -0.343 5.343 16 C 0.310 3.690 17 O -0.477 6.477 18 C -0.109 4.109 19 H 0.138 0.862 20 C -0.154 4.154 21 C -0.144 4.144 22 C -0.096 4.096 23 N -0.253 5.253 24 C -0.119 4.119 25 C 0.152 3.848 26 F -0.199 7.199 27 F -0.204 7.204 28 C -0.053 4.053 29 C -0.028 4.028 30 H 0.012 0.988 31 H 0.038 0.962 32 H 0.048 0.952 33 H 0.057 0.943 34 H 0.085 0.915 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.064 0.936 40 H 0.104 0.896 41 H 0.109 0.891 42 H 0.118 0.882 43 H 0.060 0.940 44 H 0.136 0.864 45 H 0.156 0.844 46 H 0.166 0.834 47 H 0.050 0.950 48 H 0.083 0.917 49 H 0.057 0.943 50 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 2.793 -29.598 -5.119 30.167 hybrid contribution 0.512 1.814 1.698 2.536 sum 3.305 -27.785 -3.421 28.189 Atomic orbital electron populations 1.20442 0.82994 0.95779 0.97092 1.44093 1.01899 1.01092 1.85244 1.19607 0.99327 0.86505 1.34229 0.90254 1.25943 0.98376 1.02395 0.98281 1.70256 1.19372 1.27916 1.41258 0.85238 0.77539 0.79003 0.78012 1.19832 1.22483 1.20132 1.21562 0.96184 0.84642 0.91859 0.89931 1.23246 1.02493 0.93487 0.98775 1.22677 1.02132 0.98182 0.78663 1.48592 1.66848 1.06148 1.12690 1.21096 0.75492 0.86896 0.85524 1.90685 1.51471 1.86688 1.18902 1.21256 1.01636 0.88412 0.99632 0.86237 1.21742 0.92947 0.99643 1.01020 1.21568 1.02962 0.91920 0.97965 1.22614 0.88450 1.00495 0.98049 1.62017 1.26008 1.00872 1.36398 1.23626 1.01892 0.99495 0.86886 1.23499 0.76318 0.84121 1.00881 1.92880 1.33830 1.96642 1.96510 1.92996 1.91452 1.47188 1.88797 1.21981 1.01000 0.88119 0.94186 1.22457 0.99431 0.81692 0.99210 0.98763 0.96150 0.95202 0.94327 0.91522 0.87894 0.87705 0.88561 0.88759 0.93616 0.89639 0.89075 0.88172 0.93972 0.86447 0.84432 0.83388 0.94971 0.91749 0.94335 0.94930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.24 7.68 127.77 0.98 10.22 16 2 N -0.60 -29.96 2.94 -696.16 -2.04 -32.01 16 3 C -0.27 -14.47 9.61 84.03 0.81 -13.66 16 4 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 5 C -0.06 -3.10 5.17 84.86 0.44 -2.66 16 6 N -0.94 -57.11 10.58 21.65 0.23 -56.88 16 7 Si 0.97 45.17 29.56 68.60 2.03 47.20 16 8 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 9 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 11 C 0.17 6.51 3.43 46.18 0.16 6.66 16 12 H 0.08 3.14 7.94 -2.38 -0.02 3.12 16 13 C -0.14 -4.00 6.59 31.98 0.21 -3.79 16 14 C 0.10 2.36 5.14 86.85 0.45 2.80 16 15 N -0.61 -19.85 3.32 -811.78 -2.70 -22.55 16 16 C 0.52 17.78 7.22 87.66 0.63 18.41 16 17 O -0.60 -26.65 16.31 -3.05 -0.05 -26.69 16 18 C -0.09 -2.08 2.04 -11.49 -0.02 -2.10 16 19 H 0.12 2.42 7.85 -2.39 -0.02 2.40 16 20 C -0.12 -2.07 5.06 30.67 0.16 -1.91 16 21 C -0.11 -1.30 6.09 30.65 0.19 -1.12 16 22 C 0.03 0.43 5.03 86.32 0.43 0.86 16 23 N -0.53 -8.75 4.86 -896.37 -4.35 -13.11 16 24 C 0.01 0.11 6.01 86.31 0.52 0.63 16 25 C 0.21 3.02 5.14 71.98 0.37 3.39 16 26 F -0.22 -4.17 13.99 44.97 0.63 -3.54 16 27 F -0.22 -5.54 13.84 44.97 0.62 -4.92 16 28 C 0.08 1.87 2.53 86.32 0.22 2.09 16 29 C 0.10 4.04 6.51 86.73 0.56 4.61 16 30 H -0.01 -0.35 7.26 -2.39 -0.02 -0.36 16 31 H 0.02 1.09 7.32 -2.39 -0.02 1.07 16 32 H 0.03 1.30 6.21 -2.39 -0.01 1.29 16 33 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 34 H 0.07 2.07 6.21 -2.39 -0.01 2.06 16 35 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.10 1.73 7.34 -2.39 -0.02 1.71 16 37 H 0.10 1.69 7.13 -2.39 -0.02 1.68 16 38 H 0.09 1.37 5.09 -2.38 -0.01 1.36 16 39 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.10 0.90 7.95 -2.39 -0.02 0.88 16 43 H 0.04 0.74 5.61 -2.38 -0.01 0.73 16 44 H 0.12 1.07 8.14 -2.39 -0.02 1.06 16 45 H 0.14 0.59 7.85 -2.39 -0.02 0.58 16 46 H 0.15 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.03 0.99 5.65 -2.39 -0.01 0.97 16 48 H 0.06 1.85 7.74 -2.39 -0.02 1.83 16 49 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 50 H 0.03 1.59 7.03 -2.39 -0.02 1.57 16 Total: -1.00 -78.28 377.26 1.40 -76.88 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: 0.94 Total: 11.19 kcal Atomic # 6 Polarization: 18.33 SS G_CDS: 6.10 Total: 24.43 kcal Atomic # 7 Polarization: -115.68 SS G_CDS: -8.87 Total: -124.54 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.05 Total: -26.69 kcal Atomic # 9 Polarization: -9.71 SS G_CDS: 1.25 Total: -8.45 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -78.28 1.40 -76.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972181686.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.349 kcal (2) G-P(sol) polarization free energy of solvation -78.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds