Wall clock time and date at job start Wed Apr 1 2020 03:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36933 * 119.99873 * 2 1 4 4 H 1.08005 * 119.99841 * 161.06833 * 3 2 1 5 5 C 1.38815 * 119.99965 * 340.80142 * 3 2 1 6 6 N 1.31613 * 119.99966 * 346.78484 * 5 3 2 7 7 Si 1.86797 * 119.99801 * 166.79585 * 5 3 2 8 8 H 1.48502 * 109.47563 * 59.99851 * 7 5 3 9 9 H 1.48504 * 109.47009 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47172 * 299.99529 * 7 5 3 11 11 C 1.46502 * 119.99973 * 180.02562 * 2 1 3 12 12 H 1.09000 * 110.63855 * 181.68588 * 11 2 1 13 13 C 1.55156 * 110.72089 * 305.02035 * 11 2 1 14 14 C 1.54906 * 101.57970 * 153.86987 * 13 11 2 15 15 N 1.47422 * 104.83468 * 322.98705 * 14 13 11 16 16 C 1.34770 * 125.65312 * 204.09610 * 15 14 13 17 17 O 1.21477 * 120.00314 * 180.02562 * 16 15 14 18 18 C 1.48447 * 119.99669 * 0.04246 * 16 15 14 19 19 C 1.39082 * 120.50725 * 179.97438 * 18 16 15 20 20 C 1.39857 * 118.19141 * 180.02562 * 19 18 16 21 21 N 1.38510 * 120.50971 * 180.02562 * 20 19 18 22 22 C 1.48531 * 111.00006 * 62.60892 * 21 20 19 23 23 C 1.54936 * 103.22740 * 159.71878 * 22 21 20 24 24 C 1.54601 * 102.91949 * 322.58194 * 23 22 21 25 25 C 1.47902 * 110.99574 * 180.02562 * 21 20 19 26 26 N 1.32836 * 118.96965 * 0.02562 * 20 19 18 27 27 C 1.31844 * 120.91733 * 0.02562 * 26 20 19 28 28 N 1.31556 * 122.00349 * 359.71378 * 27 26 20 29 29 C 1.47027 * 108.70015 * 24.13075 * 15 14 13 30 30 H 1.08995 * 109.47456 * 84.81627 * 1 2 3 31 31 H 1.09000 * 109.46689 * 204.81195 * 1 2 3 32 32 H 1.08997 * 109.47451 * 324.80782 * 1 2 3 33 33 H 0.97001 * 120.00411 * 179.97438 * 6 5 3 34 34 H 1.09001 * 111.00323 * 271.94525 * 13 11 2 35 35 H 1.09003 * 111.00476 * 35.79039 * 13 11 2 36 36 H 1.09006 * 110.36192 * 204.15001 * 14 13 11 37 37 H 1.09000 * 110.46359 * 81.88244 * 14 13 11 38 38 H 1.08000 * 120.90555 * 359.97438 * 19 18 16 39 39 H 1.09000 * 110.66166 * 278.15206 * 22 21 20 40 40 H 1.08997 * 110.66764 * 41.28007 * 22 21 20 41 41 H 1.09001 * 110.72298 * 204.22823 * 23 22 21 42 42 H 1.08995 * 110.87677 * 81.01236 * 23 22 21 43 43 H 1.08997 * 110.31131 * 263.04340 * 24 23 22 44 44 H 1.08998 * 110.30895 * 140.87242 * 24 23 22 45 45 H 1.09000 * 109.91835 * 333.51279 * 25 21 20 46 46 H 1.09000 * 109.91577 * 94.80310 * 25 21 20 47 47 H 1.07993 * 118.99578 * 179.97438 * 27 26 20 48 48 H 1.09000 * 109.88439 * 239.52331 * 29 15 14 49 49 H 1.09000 * 109.88161 * 118.35739 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1859 1.2112 0.3035 5 6 1.5134 2.3546 -0.3953 6 7 0.3518 2.2956 -1.0113 7 14 2.3062 4.0111 -0.0534 8 1 3.6276 4.0762 -0.7278 9 1 1.4325 5.0944 -0.5717 10 1 2.4887 4.1797 1.4106 11 6 2.1975 -1.2687 -0.0006 12 1 3.2726 -1.0917 0.0295 13 6 1.7508 -2.1611 1.1875 14 6 2.0639 -3.5785 0.6467 15 7 1.7324 -3.5167 -0.7884 16 6 1.4057 -4.5685 -1.5652 17 8 1.1507 -4.3994 -2.7408 18 6 1.3570 -5.9336 -0.9839 19 6 1.0205 -7.0264 -1.7757 20 6 0.9889 -8.2905 -1.1780 21 7 0.6604 -9.4119 -1.9217 22 6 1.6497 -9.6401 -3.0059 23 6 1.4495 -11.1352 -3.3595 24 6 1.1792 -11.7830 -1.9820 25 6 0.6909 -10.6307 -1.0843 26 7 1.2788 -8.3988 0.1138 27 6 1.5920 -7.3366 0.8292 28 7 1.6379 -6.1312 0.3042 29 6 1.8182 -2.1177 -1.2322 30 1 -0.3634 0.0928 -1.0234 31 1 -0.3633 -0.9328 0.4313 32 1 -0.3634 0.8398 0.5922 33 1 -0.0930 3.1122 -1.2872 34 1 2.3373 -1.9451 2.0805 35 1 0.6850 -2.0446 1.3845 36 1 1.4432 -4.3213 1.1478 37 1 3.1196 -3.8135 0.7825 38 1 0.7891 -6.9022 -2.8232 39 1 1.4297 -9.0084 -3.8665 40 1 2.6630 -9.4623 -2.6458 41 1 2.3516 -11.5492 -3.8100 42 1 0.5940 -11.2665 -4.0220 43 1 2.0962 -12.2136 -1.5800 44 1 0.4074 -12.5478 -2.0685 45 1 1.3798 -10.4916 -0.2511 46 1 -0.3093 -10.8492 -0.7101 47 1 1.8218 -7.4603 1.8771 48 1 0.8540 -1.7931 -1.6235 49 1 2.5847 -2.0189 -2.0008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972329840.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:34 Heat of formation + Delta-G solvation = 78.936352 kcal Electronic energy + Delta-G solvation = -30152.279781 eV Core-core repulsion = 26116.460168 eV Total energy + Delta-G solvation = -4035.819613 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.69062 -39.82932 -38.91915 -37.44334 -34.89907 -34.25697 -32.93772 -31.59031 -30.34195 -29.72873 -29.46472 -28.02811 -26.06947 -25.53148 -24.44731 -23.40933 -22.35865 -21.92503 -21.30790 -19.93180 -19.17905 -18.02065 -17.86746 -17.04040 -16.54297 -16.03031 -15.81612 -15.73911 -15.58727 -15.17539 -14.82265 -14.70795 -14.33519 -13.99068 -13.58802 -13.33719 -13.27430 -13.09997 -12.75416 -12.60366 -12.47866 -12.13919 -11.88469 -11.85602 -11.71589 -11.54971 -11.22756 -11.10271 -10.89128 -10.87826 -10.77389 -10.55883 -10.41556 -10.29498 -10.24425 -10.21646 -9.82605 -9.78087 -9.34207 -8.94924 -8.55752 -8.30712 -6.84772 -5.74524 -3.19342 0.34848 0.65030 2.71173 2.87964 3.14100 3.38554 3.44003 3.44836 3.64151 3.76655 3.82336 4.07250 4.28302 4.39666 4.47540 4.54322 4.71986 4.78502 4.94108 4.99054 5.13586 5.19543 5.26356 5.29594 5.31381 5.36554 5.42512 5.47091 5.53492 5.62357 5.67085 5.72389 5.80812 5.92096 5.97130 6.01441 6.20037 6.37664 6.43835 6.53841 6.56299 6.63018 6.72088 6.83903 6.89618 7.39630 7.67692 7.71317 7.75222 7.80449 8.20590 8.34744 9.19790 9.82595 10.30099 11.29941 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.032559 B = 0.002026 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.773966 B =13819.699020 C =14251.359282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.587 5.587 3 C -0.259 4.259 4 H 0.072 0.928 5 C 0.002 3.998 6 N -0.906 5.906 7 Si 0.908 3.092 8 H -0.283 1.283 9 H -0.291 1.291 10 H -0.284 1.284 11 C 0.173 3.827 12 H 0.079 0.921 13 C -0.157 4.157 14 C 0.104 3.896 15 N -0.585 5.585 16 C 0.572 3.428 17 O -0.532 6.532 18 C 0.158 3.842 19 C -0.178 4.178 20 C 0.348 3.652 21 N -0.459 5.459 22 C 0.042 3.958 23 C -0.123 4.123 24 C -0.133 4.133 25 C 0.034 3.966 26 N -0.548 5.548 27 C 0.316 3.684 28 N -0.508 5.508 29 C 0.084 3.916 30 H 0.029 0.971 31 H 0.001 0.999 32 H 0.048 0.952 33 H 0.254 0.746 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.065 0.935 38 H 0.159 0.841 39 H 0.097 0.903 40 H 0.058 0.942 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.202 0.798 48 H 0.076 0.924 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.018 -28.021 1.572 28.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.307 5.307 3 C -0.389 4.389 4 H 0.090 0.910 5 C -0.197 4.197 6 N -0.551 5.551 7 Si 0.738 3.262 8 H -0.209 1.209 9 H -0.217 1.217 10 H -0.211 1.211 11 C 0.062 3.938 12 H 0.097 0.903 13 C -0.197 4.197 14 C -0.019 4.019 15 N -0.316 5.316 16 C 0.357 3.643 17 O -0.409 6.409 18 C 0.013 3.987 19 C -0.203 4.203 20 C 0.106 3.894 21 N -0.177 5.177 22 C -0.083 4.083 23 C -0.161 4.161 24 C -0.171 4.171 25 C -0.092 4.092 26 N -0.269 5.269 27 C 0.027 3.973 28 N -0.226 5.226 29 C -0.040 4.040 30 H 0.047 0.953 31 H 0.019 0.981 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.116 0.884 37 H 0.083 0.917 38 H 0.177 0.823 39 H 0.115 0.885 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.103 0.897 46 H 0.103 0.897 47 H 0.219 0.781 48 H 0.094 0.906 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.424 -27.781 1.515 27.927 hybrid contribution 0.676 0.926 -0.391 1.211 sum 3.100 -26.855 1.124 27.057 Atomic orbital electron populations 1.20825 0.82246 0.95693 0.99562 1.43965 1.02021 0.99897 1.84827 1.19218 0.96362 0.84600 1.38686 0.91048 1.25000 0.97586 0.98484 0.98614 1.70089 1.16831 1.26876 1.41313 0.86280 0.78391 0.83497 0.78011 1.20931 1.21653 1.21050 1.21361 0.96388 0.85845 0.90179 0.90297 1.23420 1.02700 0.93741 0.99833 1.22654 1.00838 0.98639 0.79734 1.48403 1.64263 1.07408 1.11515 1.17406 0.79042 0.82502 0.85379 1.90797 1.50315 1.84458 1.15354 1.21554 0.92917 0.94703 0.89547 1.22366 1.03164 0.91135 1.03672 1.20170 0.88287 0.91677 0.89261 1.61709 1.43414 1.02004 1.10598 1.23395 0.93074 0.98241 0.93585 1.22523 1.02836 0.93281 0.97509 1.22469 1.01822 0.97824 0.95022 1.22960 1.03454 0.86775 0.96049 1.68224 1.16033 1.35392 1.07243 1.24879 0.89955 0.82234 1.00276 1.68694 1.16571 1.25453 1.11901 1.23074 1.02611 0.78188 1.00157 0.95261 0.98063 0.93311 0.93586 0.90392 0.90578 0.88425 0.91716 0.82306 0.88514 0.92318 0.90159 0.90067 0.90992 0.90488 0.89700 0.89689 0.78118 0.90560 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.95 7.72 59.85 0.46 4.41 16 2 N -0.59 -14.34 2.94 -171.39 -0.50 -14.84 16 3 C -0.26 -6.95 9.66 -15.06 -0.15 -7.10 16 4 H 0.07 1.84 7.81 -52.48 -0.41 1.43 16 5 C 0.00 0.04 5.11 -17.43 -0.09 -0.04 16 6 N -0.91 -26.27 10.50 55.49 0.58 -25.69 16 7 Si 0.91 21.64 29.57 -169.99 -5.03 16.61 16 8 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 9 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 C 0.17 3.43 3.44 -66.10 -0.23 3.20 16 12 H 0.08 1.53 7.91 -51.93 -0.41 1.12 16 13 C -0.16 -2.55 6.59 -24.58 -0.16 -2.71 16 14 C 0.10 1.50 5.96 -2.53 -0.02 1.49 16 15 N -0.58 -10.05 3.33 -171.41 -0.57 -10.62 16 16 C 0.57 9.91 7.86 -12.06 -0.09 9.82 16 17 O -0.53 -10.71 16.74 5.39 0.09 -10.62 16 18 C 0.16 2.24 6.74 -82.71 -0.56 1.69 16 19 C -0.18 -2.24 9.13 -38.66 -0.35 -2.60 16 20 C 0.35 3.88 6.21 -154.85 -0.96 2.92 16 21 N -0.46 -4.29 5.30 -169.03 -0.90 -5.19 16 22 C 0.04 0.31 6.08 -1.90 -0.01 0.30 16 23 C -0.12 -0.64 7.06 -24.87 -0.18 -0.82 16 24 C -0.13 -0.71 6.93 -25.36 -0.18 -0.88 16 25 C 0.03 0.26 6.37 -2.74 -0.02 0.24 16 26 N -0.55 -5.86 8.28 -13.83 -0.11 -5.98 16 27 C 0.32 3.17 12.27 -92.32 -1.13 2.04 16 28 N -0.51 -6.27 6.79 -11.22 -0.08 -6.34 16 29 C 0.08 1.65 6.50 -3.06 -0.02 1.63 16 30 H 0.03 0.79 7.36 -51.93 -0.38 0.40 16 31 H 0.00 0.02 6.13 -51.93 -0.32 -0.30 16 32 H 0.05 1.29 7.09 -51.93 -0.37 0.92 16 33 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.08 1.33 6.14 -51.93 -0.32 1.01 16 36 H 0.10 1.32 5.92 -51.93 -0.31 1.01 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.16 1.97 7.73 -52.49 -0.41 1.56 16 39 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.44 7.99 -51.93 -0.42 0.02 16 41 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.08 0.71 6.53 -51.93 -0.34 0.37 16 46 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.20 1.26 8.06 -52.49 -0.42 0.84 16 48 H 0.08 1.71 7.06 -51.93 -0.37 1.34 16 49 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 385.72 15.07 5.81 5.81 Total: -1.00 -31.88 385.72 -11.78 -43.67 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -7.40 Total: -0.39 kcal Atomic # 6 Polarization: 17.25 SS G_CDS: -3.68 Total: 13.57 kcal Atomic # 7 Polarization: -67.08 SS G_CDS: -1.58 Total: -68.66 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.09 Total: -10.62 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.88 -11.78 -43.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972329840.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.604 kcal (2) G-P(sol) polarization free energy of solvation -31.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds