Wall clock time and date at job start Wed Apr 1 2020 03:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36933 * 119.99873 * 2 1 4 4 H 1.08005 * 119.99841 * 161.06833 * 3 2 1 5 5 C 1.38815 * 119.99965 * 340.80142 * 3 2 1 6 6 N 1.31613 * 119.99966 * 346.78484 * 5 3 2 7 7 Si 1.86797 * 119.99801 * 166.79585 * 5 3 2 8 8 H 1.48502 * 109.47563 * 59.99851 * 7 5 3 9 9 H 1.48504 * 109.47009 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47172 * 299.99529 * 7 5 3 11 11 C 1.46502 * 119.99973 * 180.02562 * 2 1 3 12 12 H 1.09000 * 110.63855 * 181.68588 * 11 2 1 13 13 C 1.55156 * 110.72089 * 305.02035 * 11 2 1 14 14 C 1.54906 * 101.57970 * 153.86987 * 13 11 2 15 15 N 1.47422 * 104.83468 * 322.98705 * 14 13 11 16 16 C 1.34770 * 125.65312 * 204.09610 * 15 14 13 17 17 O 1.21477 * 120.00314 * 180.02562 * 16 15 14 18 18 C 1.48447 * 119.99669 * 0.04246 * 16 15 14 19 19 C 1.39082 * 120.50725 * 179.97438 * 18 16 15 20 20 C 1.39857 * 118.19141 * 180.02562 * 19 18 16 21 21 N 1.38510 * 120.50971 * 180.02562 * 20 19 18 22 22 C 1.48531 * 111.00006 * 62.60892 * 21 20 19 23 23 C 1.54936 * 103.22740 * 159.71878 * 22 21 20 24 24 C 1.54601 * 102.91949 * 322.58194 * 23 22 21 25 25 C 1.47902 * 110.99574 * 180.02562 * 21 20 19 26 26 N 1.32836 * 118.96965 * 0.02562 * 20 19 18 27 27 C 1.31844 * 120.91733 * 0.02562 * 26 20 19 28 28 N 1.31556 * 122.00349 * 359.71378 * 27 26 20 29 29 C 1.47027 * 108.70015 * 24.13075 * 15 14 13 30 30 H 1.08995 * 109.47456 * 84.81627 * 1 2 3 31 31 H 1.09000 * 109.46689 * 204.81195 * 1 2 3 32 32 H 1.08997 * 109.47451 * 324.80782 * 1 2 3 33 33 H 0.97001 * 120.00411 * 179.97438 * 6 5 3 34 34 H 1.09001 * 111.00323 * 271.94525 * 13 11 2 35 35 H 1.09003 * 111.00476 * 35.79039 * 13 11 2 36 36 H 1.09006 * 110.36192 * 204.15001 * 14 13 11 37 37 H 1.09000 * 110.46359 * 81.88244 * 14 13 11 38 38 H 1.08000 * 120.90555 * 359.97438 * 19 18 16 39 39 H 1.09000 * 110.66166 * 278.15206 * 22 21 20 40 40 H 1.08997 * 110.66764 * 41.28007 * 22 21 20 41 41 H 1.09001 * 110.72298 * 204.22823 * 23 22 21 42 42 H 1.08995 * 110.87677 * 81.01236 * 23 22 21 43 43 H 1.08997 * 110.31131 * 263.04340 * 24 23 22 44 44 H 1.08998 * 110.30895 * 140.87242 * 24 23 22 45 45 H 1.09000 * 109.91835 * 333.51279 * 25 21 20 46 46 H 1.09000 * 109.91577 * 94.80310 * 25 21 20 47 47 H 1.07993 * 118.99578 * 179.97438 * 27 26 20 48 48 H 1.09000 * 109.88439 * 239.52331 * 29 15 14 49 49 H 1.09000 * 109.88161 * 118.35739 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1859 1.2112 0.3035 5 6 1.5134 2.3546 -0.3953 6 7 0.3518 2.2956 -1.0113 7 14 2.3062 4.0111 -0.0534 8 1 3.6276 4.0762 -0.7278 9 1 1.4325 5.0944 -0.5717 10 1 2.4887 4.1797 1.4106 11 6 2.1975 -1.2687 -0.0006 12 1 3.2726 -1.0917 0.0295 13 6 1.7508 -2.1611 1.1875 14 6 2.0639 -3.5785 0.6467 15 7 1.7324 -3.5167 -0.7884 16 6 1.4057 -4.5685 -1.5652 17 8 1.1507 -4.3994 -2.7408 18 6 1.3570 -5.9336 -0.9839 19 6 1.0205 -7.0264 -1.7757 20 6 0.9889 -8.2905 -1.1780 21 7 0.6604 -9.4119 -1.9217 22 6 1.6497 -9.6401 -3.0059 23 6 1.4495 -11.1352 -3.3595 24 6 1.1792 -11.7830 -1.9820 25 6 0.6909 -10.6307 -1.0843 26 7 1.2788 -8.3988 0.1138 27 6 1.5920 -7.3366 0.8292 28 7 1.6379 -6.1312 0.3042 29 6 1.8182 -2.1177 -1.2322 30 1 -0.3634 0.0928 -1.0234 31 1 -0.3633 -0.9328 0.4313 32 1 -0.3634 0.8398 0.5922 33 1 -0.0930 3.1122 -1.2872 34 1 2.3373 -1.9451 2.0805 35 1 0.6850 -2.0446 1.3845 36 1 1.4432 -4.3213 1.1478 37 1 3.1196 -3.8135 0.7825 38 1 0.7891 -6.9022 -2.8232 39 1 1.4297 -9.0084 -3.8665 40 1 2.6630 -9.4623 -2.6458 41 1 2.3516 -11.5492 -3.8100 42 1 0.5940 -11.2665 -4.0220 43 1 2.0962 -12.2136 -1.5800 44 1 0.4074 -12.5478 -2.0685 45 1 1.3798 -10.4916 -0.2511 46 1 -0.3093 -10.8492 -0.7101 47 1 1.8218 -7.4603 1.8771 48 1 0.8540 -1.7931 -1.6235 49 1 2.5847 -2.0189 -2.0008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972329840.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:33 Heat of formation + Delta-G solvation = 60.491327 kcal Electronic energy + Delta-G solvation = -30153.079617 eV Core-core repulsion = 26116.460168 eV Total energy + Delta-G solvation = -4036.619450 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.59279 -41.06007 -39.75072 -38.96701 -36.63179 -35.14783 -33.82436 -33.38386 -31.30162 -31.09019 -30.08122 -29.52838 -28.09164 -26.74764 -25.25788 -24.86087 -23.83980 -22.76387 -21.84935 -21.07848 -20.78835 -19.09304 -18.96766 -18.73052 -17.55421 -17.37741 -16.87965 -16.73623 -16.68656 -16.55370 -15.98006 -15.73989 -15.53216 -15.04516 -14.98936 -14.83833 -14.43975 -14.22439 -14.04556 -13.74758 -13.64961 -13.34382 -13.30448 -13.13674 -12.71399 -12.54514 -12.39127 -12.37313 -12.26122 -12.22329 -12.12522 -12.05843 -11.86965 -11.75471 -11.62341 -11.43968 -11.35264 -11.12541 -10.62604 -10.34004 -9.79903 -9.64377 -8.86102 -7.82601 -5.29860 -0.67738 -0.20607 1.48793 1.50763 1.53589 1.57562 1.64558 2.29147 2.51181 2.67117 2.76337 3.06111 3.29449 3.41233 3.56272 3.60991 3.72133 3.77837 3.87479 3.95311 4.07180 4.16392 4.26302 4.28436 4.39782 4.43450 4.46002 4.46495 4.62290 4.71756 4.80238 4.82754 4.88337 4.92475 4.99194 5.04942 5.09553 5.11708 5.18244 5.20836 5.26748 5.35657 5.41818 5.43419 5.63424 5.71410 5.77149 5.82900 6.29537 6.35638 6.75448 6.93453 7.12728 7.83823 8.27672 9.20696 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.032559 B = 0.002026 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.773966 B =13819.699020 C =14251.359282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.602 5.602 3 C -0.264 4.264 4 H 0.082 0.918 5 C -0.058 4.058 6 N -0.942 5.942 7 Si 0.974 3.026 8 H -0.275 1.275 9 H -0.299 1.299 10 H -0.275 1.275 11 C 0.167 3.833 12 H 0.087 0.913 13 C -0.143 4.143 14 C 0.114 3.886 15 N -0.587 5.587 16 C 0.568 3.432 17 O -0.571 6.571 18 C 0.147 3.853 19 C -0.185 4.185 20 C 0.354 3.646 21 N -0.469 5.469 22 C 0.038 3.962 23 C -0.118 4.118 24 C -0.128 4.128 25 C 0.032 3.968 26 N -0.547 5.547 27 C 0.323 3.677 28 N -0.515 5.515 29 C 0.095 3.905 30 H -0.005 1.005 31 H 0.028 0.972 32 H 0.023 0.977 33 H 0.247 0.753 34 H 0.102 0.898 35 H 0.064 0.936 36 H 0.115 0.885 37 H 0.087 0.913 38 H 0.153 0.847 39 H 0.095 0.905 40 H 0.057 0.943 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.079 0.921 46 H 0.082 0.918 47 H 0.243 0.757 48 H 0.041 0.959 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.572 -30.735 3.493 31.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.323 5.323 3 C -0.393 4.393 4 H 0.100 0.900 5 C -0.253 4.253 6 N -0.589 5.589 7 Si 0.802 3.198 8 H -0.201 1.201 9 H -0.226 1.226 10 H -0.201 1.201 11 C 0.058 3.942 12 H 0.105 0.895 13 C -0.182 4.182 14 C -0.008 4.008 15 N -0.318 5.318 16 C 0.355 3.645 17 O -0.451 6.451 18 C 0.002 3.998 19 C -0.211 4.211 20 C 0.111 3.889 21 N -0.187 5.187 22 C -0.087 4.087 23 C -0.156 4.156 24 C -0.166 4.166 25 C -0.094 4.094 26 N -0.268 5.268 27 C 0.034 3.966 28 N -0.234 5.234 29 C -0.030 4.030 30 H 0.013 0.987 31 H 0.046 0.954 32 H 0.042 0.958 33 H 0.056 0.944 34 H 0.120 0.880 35 H 0.083 0.917 36 H 0.132 0.868 37 H 0.105 0.895 38 H 0.170 0.830 39 H 0.113 0.887 40 H 0.075 0.925 41 H 0.116 0.884 42 H 0.102 0.898 43 H 0.101 0.899 44 H 0.107 0.893 45 H 0.098 0.902 46 H 0.101 0.899 47 H 0.259 0.741 48 H 0.060 0.940 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.014 -30.554 3.472 31.011 hybrid contribution 0.193 1.596 -1.002 1.894 sum 4.206 -28.957 2.470 29.365 Atomic orbital electron populations 1.20468 0.82856 0.95868 0.97173 1.44149 1.01981 1.01078 1.85073 1.19642 0.96812 0.85562 1.37318 0.90015 1.25825 0.98351 1.01981 0.99108 1.70281 1.18449 1.27092 1.43068 0.85234 0.77419 0.79043 0.78079 1.20099 1.22557 1.20077 1.21569 0.96414 0.84567 0.91646 0.89506 1.23303 1.02245 0.93646 0.99022 1.22785 1.02490 0.97727 0.77760 1.48441 1.64371 1.06229 1.12737 1.17910 0.77910 0.83696 0.84967 1.90765 1.51817 1.85344 1.17134 1.21027 0.95002 0.92963 0.90765 1.22328 1.03783 0.91588 1.03428 1.20303 0.87320 0.91690 0.89589 1.61707 1.43708 1.02161 1.11155 1.23505 0.92425 0.99877 0.92861 1.22542 1.03808 0.91576 0.97646 1.22469 1.02627 0.97096 0.94372 1.23036 1.03326 0.86830 0.96195 1.68366 1.15966 1.35518 1.06904 1.25698 0.88150 0.81120 1.01593 1.68618 1.17243 1.26766 1.10740 1.22670 1.00323 0.80169 0.99864 0.98705 0.95383 0.95778 0.94356 0.87981 0.91724 0.86758 0.89499 0.82973 0.88656 0.92466 0.88425 0.89842 0.89922 0.89344 0.90225 0.89912 0.74089 0.94033 0.92858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.19 7.72 127.77 0.99 10.17 16 2 N -0.60 -29.75 2.94 -696.16 -2.05 -31.80 16 3 C -0.26 -14.18 9.66 84.03 0.81 -13.37 16 4 H 0.08 4.14 7.81 -2.91 -0.02 4.12 16 5 C -0.06 -3.25 5.11 84.86 0.43 -2.81 16 6 N -0.94 -56.58 10.50 21.65 0.23 -56.35 16 7 Si 0.97 44.95 29.57 68.60 2.03 46.98 16 8 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 9 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 11 C 0.17 6.53 3.44 46.18 0.16 6.69 16 12 H 0.09 3.26 7.91 -2.39 -0.02 3.24 16 13 C -0.14 -4.33 6.59 31.98 0.21 -4.12 16 14 C 0.11 3.01 5.96 86.85 0.52 3.52 16 15 N -0.59 -20.01 3.33 -814.53 -2.71 -22.71 16 16 C 0.57 19.94 7.86 86.97 0.68 20.63 16 17 O -0.57 -23.96 16.74 -3.64 -0.06 -24.03 16 18 C 0.15 4.06 6.74 41.84 0.28 4.35 16 19 C -0.18 -4.62 9.13 22.86 0.21 -4.41 16 20 C 0.35 7.43 6.21 133.28 0.83 8.26 16 21 N -0.47 -8.14 5.30 -688.67 -3.65 -11.79 16 22 C 0.04 0.50 6.08 86.65 0.53 1.03 16 23 C -0.12 -0.95 7.06 31.80 0.22 -0.73 16 24 C -0.13 -1.02 6.93 31.48 0.22 -0.80 16 25 C 0.03 0.43 6.37 86.46 0.55 0.98 16 26 N -0.55 -10.37 8.28 -197.66 -1.64 -12.01 16 27 C 0.32 5.45 12.27 180.94 2.22 7.67 16 28 N -0.51 -11.49 6.79 -189.41 -1.29 -12.77 16 29 C 0.09 3.83 6.50 86.73 0.56 4.39 16 30 H -0.01 -0.31 7.36 -2.39 -0.02 -0.33 16 31 H 0.03 1.23 6.13 -2.39 -0.01 1.22 16 32 H 0.02 1.30 7.09 -2.39 -0.02 1.28 16 33 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 34 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 35 H 0.06 2.14 6.14 -2.39 -0.01 2.12 16 36 H 0.11 2.73 5.92 -2.38 -0.01 2.72 16 37 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.15 3.91 7.73 -2.91 -0.02 3.89 16 39 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.06 0.78 7.99 -2.39 -0.02 0.76 16 41 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.08 1.16 6.53 -2.39 -0.02 1.14 16 46 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.24 1.90 8.06 -2.91 -0.02 1.87 16 48 H 0.04 1.96 7.06 -2.39 -0.02 1.94 16 49 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -71.66 385.72 1.25 -70.40 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 0.96 Total: 12.63 kcal Atomic # 6 Polarization: 32.02 SS G_CDS: 9.43 Total: 41.45 kcal Atomic # 7 Polarization: -136.33 SS G_CDS: -11.10 Total: -147.43 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.06 Total: -24.03 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -71.66 1.25 -70.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972329840.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.896 kcal (2) G-P(sol) polarization free energy of solvation -71.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds