Wall clock time and date at job start Wed Apr 1 2020 03:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46503 * 120.00053 * 2 1 4 4 C 1.38509 * 120.00173 * 179.97438 * 2 1 3 5 5 C 1.39599 * 120.04650 * 5.00365 * 4 2 1 6 6 C 1.38278 * 118.02674 * 180.02562 * 5 4 2 7 7 C 1.40062 * 117.99717 * 359.97438 * 6 5 4 8 8 C 1.47864 * 120.10151 * 180.02562 * 7 6 5 9 9 O 1.21552 * 119.99496 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00053 * 179.97438 * 8 7 6 11 11 C 1.47680 * 134.45049 * 180.02562 * 10 8 7 12 12 C 1.53438 * 85.96991 * 155.71093 * 11 10 8 13 13 C 1.47672 * 134.45707 * 0.02562 * 10 8 7 14 14 C 1.52632 * 113.71715 * 268.84963 * 12 11 10 15 15 C 1.53186 * 109.35419 * 171.27854 * 14 12 11 16 16 C 1.52667 * 109.42930 * 58.93080 * 15 14 12 17 17 N 1.46904 * 109.34156 * 303.76656 * 16 15 14 18 18 C 1.36944 * 120.68850 * 235.30814 * 17 16 15 19 19 H 1.08000 * 119.99474 * 28.83342 * 18 17 16 20 20 C 1.38809 * 119.99889 * 208.82345 * 18 17 16 21 21 N 1.31620 * 119.99822 * 14.05359 * 20 18 17 22 22 Si 1.86800 * 119.99668 * 194.04383 * 20 18 17 23 23 H 1.48495 * 109.46804 * 84.99676 * 22 20 18 24 24 H 1.48499 * 109.46829 * 204.99229 * 22 20 18 25 25 H 1.48490 * 109.47270 * 324.99190 * 22 20 18 26 26 C 1.47111 * 118.61926 * 55.04632 * 17 16 15 27 27 N 1.32759 * 119.80874 * 0.27827 * 7 6 5 28 28 N 1.28367 * 122.10087 * 359.42061 * 27 7 6 29 29 H 1.09006 * 109.47234 * 270.00277 * 1 2 3 30 30 H 1.08998 * 109.47205 * 30.00209 * 1 2 3 31 31 H 1.09000 * 109.47084 * 150.00517 * 1 2 3 32 32 H 1.09003 * 109.46938 * 270.00452 * 3 2 1 33 33 H 1.09002 * 109.47190 * 29.99355 * 3 2 1 34 34 H 1.08997 * 109.47673 * 150.00048 * 3 2 1 35 35 H 1.08000 * 120.98368 * 359.97438 * 5 4 2 36 36 H 1.08009 * 121.00100 * 179.97438 * 6 5 4 37 37 H 1.08997 * 113.78903 * 41.44722 * 11 10 8 38 38 H 1.08995 * 113.79129 * 269.97683 * 11 10 8 39 39 H 1.08994 * 113.79456 * 90.02458 * 13 10 8 40 40 H 1.09000 * 113.79132 * 318.54455 * 13 10 8 41 41 H 1.08998 * 109.49222 * 291.24039 * 14 12 11 42 42 H 1.08996 * 109.49206 * 51.31299 * 14 12 11 43 43 H 1.08998 * 109.48673 * 179.02651 * 15 14 12 44 44 H 1.09000 * 109.49084 * 299.09608 * 15 14 12 45 45 H 1.08995 * 109.44201 * 183.78776 * 16 15 14 46 46 H 1.08993 * 109.37034 * 63.70886 * 16 15 14 47 47 H 0.97006 * 119.99739 * 180.02562 * 21 20 18 48 48 H 1.09002 * 109.64140 * 68.57470 * 26 17 16 49 49 H 1.09004 * 109.63639 * 189.18638 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1576 -1.1995 0.0005 5 6 1.4646 -2.4068 -0.1043 6 6 2.1976 -3.5793 -0.0990 7 6 3.5906 -3.4834 0.0107 8 6 4.4198 -4.7076 0.0206 9 8 3.8926 -5.7993 -0.0672 10 7 5.7601 -4.6129 0.1257 11 6 6.8659 -5.5908 0.1666 12 6 7.7512 -4.4485 -0.3490 13 6 6.7113 -3.4897 0.2463 14 6 7.8447 -4.3833 -1.8710 15 6 8.5633 -3.0940 -2.2807 16 6 9.9578 -3.0705 -1.6597 17 7 9.8439 -3.2148 -0.2023 18 6 10.4001 -2.2871 0.6375 19 1 10.5067 -1.2619 0.3149 20 6 10.8267 -2.6643 1.9034 21 7 10.9573 -3.9398 2.2009 22 14 11.2158 -1.3617 3.1846 23 1 9.9659 -0.9627 3.8800 24 1 12.1783 -1.9114 4.1728 25 1 11.8124 -0.1758 2.5193 26 6 9.1148 -4.3735 0.3362 27 7 4.1641 -2.2902 0.1110 28 7 3.4823 -1.2026 0.1004 29 1 -0.3634 0.0000 1.0277 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 2.3791 1.5834 -1.0277 33 1 1.6084 2.0285 0.5137 34 1 3.1499 1.1385 0.5138 35 1 0.3879 -2.4245 -0.1863 36 1 1.7106 -4.5402 -0.1771 37 1 6.7524 -6.4126 -0.5404 38 1 7.1205 -5.9249 1.1723 39 1 6.9199 -3.1988 1.2758 40 1 6.4751 -2.6424 -0.3974 41 1 8.4041 -5.2437 -2.2382 42 1 6.8418 -4.3920 -2.2978 43 1 8.6467 -3.0535 -3.3667 44 1 7.9959 -2.2332 -1.9268 45 1 10.4440 -2.1238 -1.8953 46 1 10.5469 -3.8942 -2.0627 47 1 11.2551 -4.2034 3.0857 48 1 9.6766 -5.2857 0.1349 49 1 8.9786 -4.2534 1.4110 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982121282.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:28 Heat of formation + Delta-G solvation = 84.491919 kcal Electronic energy + Delta-G solvation = -31032.730747 eV Core-core repulsion = 26997.152042 eV Total energy + Delta-G solvation = -4035.578706 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.30321 -41.53815 -39.54768 -38.06716 -37.36613 -34.61536 -34.18521 -32.98343 -31.86515 -31.39762 -29.38801 -28.02398 -27.26635 -27.14822 -26.42996 -25.48134 -23.94942 -23.37196 -22.26977 -21.09692 -19.32715 -18.96561 -18.59812 -18.49021 -18.02803 -17.13508 -17.08043 -16.67276 -16.36353 -15.70423 -15.61747 -15.54395 -15.48125 -15.21513 -14.96222 -14.71341 -14.44634 -14.39428 -14.06028 -13.91826 -13.47555 -13.36149 -13.26558 -13.15794 -12.97320 -12.81390 -12.73427 -12.59190 -12.45893 -12.21214 -11.96229 -11.79094 -11.73909 -11.57124 -11.33098 -11.27669 -11.01915 -10.90316 -10.68226 -10.47411 -9.76204 -8.93664 -8.57145 -7.80761 -5.25862 -0.39726 -0.18057 1.49581 1.52024 1.58687 1.58932 1.67118 1.80378 2.55594 2.65070 2.90439 3.27635 3.37713 3.46788 3.54348 3.65382 3.86068 3.89041 3.92297 4.08683 4.18713 4.34507 4.38652 4.40653 4.44301 4.48375 4.53079 4.59986 4.65916 4.69789 4.73473 4.76287 4.80267 4.84593 4.92052 4.98080 5.04189 5.06680 5.08728 5.18607 5.30497 5.31554 5.47593 5.60847 5.71054 5.78643 5.91816 5.98458 6.46452 6.58946 6.92164 7.22512 7.64746 7.92944 8.45545 9.25585 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.010878 B = 0.003292 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.369562 B = 8502.910667 C = 9705.903507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.597 5.597 3 C 0.087 3.913 4 C 0.342 3.658 5 C -0.172 4.172 6 C -0.029 4.029 7 C -0.051 4.051 8 C 0.594 3.406 9 O -0.574 6.574 10 N -0.621 5.621 11 C 0.119 3.881 12 C -0.108 4.108 13 C 0.149 3.851 14 C -0.075 4.075 15 C -0.122 4.122 16 C 0.142 3.858 17 N -0.606 5.606 18 C -0.253 4.253 19 H 0.064 0.936 20 C -0.045 4.045 21 N -0.933 5.933 22 Si 0.958 3.042 23 H -0.288 1.288 24 H -0.296 1.296 25 H -0.270 1.270 26 C 0.205 3.795 27 N -0.180 5.180 28 N -0.335 5.335 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.059 0.941 33 H 0.098 0.902 34 H 0.060 0.940 35 H 0.196 0.804 36 H 0.174 0.826 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.065 0.935 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.058 0.942 43 H 0.082 0.918 44 H 0.050 0.950 45 H 0.052 0.948 46 H 0.018 0.982 47 H 0.249 0.751 48 H 0.005 0.995 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.994 6.555 -7.302 25.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.308 5.308 3 C -0.055 4.055 4 C 0.101 3.899 5 C -0.204 4.204 6 C -0.057 4.057 7 C -0.203 4.203 8 C 0.383 3.617 9 O -0.454 6.454 10 N -0.353 5.353 11 C -0.003 4.003 12 C -0.111 4.111 13 C 0.027 3.973 14 C -0.113 4.113 15 C -0.161 4.161 16 C 0.017 3.983 17 N -0.329 5.329 18 C -0.383 4.383 19 H 0.082 0.918 20 C -0.240 4.240 21 N -0.580 5.580 22 Si 0.787 3.213 23 H -0.215 1.215 24 H -0.223 1.223 25 H -0.195 1.195 26 C 0.079 3.921 27 N -0.026 5.026 28 N -0.190 5.190 29 H 0.088 0.912 30 H 0.118 0.882 31 H 0.107 0.893 32 H 0.078 0.922 33 H 0.117 0.883 34 H 0.079 0.921 35 H 0.213 0.787 36 H 0.192 0.808 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.084 0.916 40 H 0.104 0.896 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.101 0.899 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.036 0.964 47 H 0.058 0.942 48 H 0.023 0.977 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -23.155 7.015 -7.089 25.212 hybrid contribution -0.493 -0.335 1.048 1.206 sum -23.648 6.680 -6.041 25.305 Atomic orbital electron populations 1.22180 0.75252 1.05394 1.03395 1.46512 1.07075 1.02227 1.75016 1.21828 0.97576 0.83695 1.02397 1.20511 0.91005 0.88890 0.89511 1.22173 1.03741 0.89348 1.05159 1.22321 0.91526 1.01513 0.90366 1.22343 0.94549 0.93533 1.09900 1.17431 0.80496 0.87332 0.76441 1.90721 1.72258 1.28382 1.54055 1.50040 1.03551 1.12485 1.69192 1.23298 0.81282 0.93787 1.01898 1.22705 0.95900 0.94824 0.97625 1.22993 0.83086 0.90889 1.00357 1.21048 0.99895 0.98612 0.91727 1.21811 0.96895 0.97192 1.00200 1.20931 0.95018 0.98647 0.83753 1.44231 1.61289 1.26511 1.00911 1.19430 1.32800 0.89977 0.96101 0.91833 1.25685 0.99804 0.97361 1.01198 1.70129 1.51636 1.15481 1.20705 0.85419 0.77208 0.79328 0.79340 1.21517 1.22283 1.19520 1.20365 0.86762 0.88280 0.96722 1.73117 1.30791 0.94849 1.03883 1.73125 1.05399 1.19409 1.21028 0.91218 0.88219 0.89329 0.92231 0.88326 0.92114 0.78661 0.80827 0.88915 0.89519 0.91634 0.89634 0.91201 0.92370 0.89937 0.93108 0.92951 0.96414 0.94224 0.97682 0.92372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.41 10.29 127.77 1.31 1.72 16 2 N -0.60 -8.80 3.38 -753.58 -2.54 -11.35 16 3 C 0.09 1.20 10.50 127.77 1.34 2.54 16 4 C 0.34 7.48 7.44 133.21 0.99 8.48 16 5 C -0.17 -2.95 9.33 22.61 0.21 -2.74 16 6 C -0.03 -0.67 9.71 22.72 0.22 -0.45 16 7 C -0.05 -1.62 6.83 42.00 0.29 -1.34 16 8 C 0.59 21.36 8.04 86.79 0.70 22.06 16 9 O -0.57 -22.29 17.11 -3.88 -0.07 -22.35 16 10 N -0.62 -22.41 3.45 -846.74 -2.92 -25.34 16 11 C 0.12 4.13 7.97 86.29 0.69 4.82 16 12 C -0.11 -4.03 0.87 -52.04 -0.05 -4.08 16 13 C 0.15 5.69 6.58 86.30 0.57 6.25 16 14 C -0.08 -2.47 5.02 30.53 0.15 -2.32 16 15 C -0.12 -4.07 5.99 30.55 0.18 -3.89 16 16 C 0.14 5.76 6.43 86.19 0.55 6.32 16 17 N -0.61 -29.77 3.01 -700.45 -2.11 -31.87 16 18 C -0.25 -13.72 9.59 84.03 0.81 -12.91 16 19 H 0.06 3.40 7.87 -2.91 -0.02 3.38 16 20 C -0.05 -2.50 4.98 84.86 0.42 -2.07 16 21 N -0.93 -54.42 11.14 21.65 0.24 -54.18 16 22 Si 0.96 45.17 29.58 68.60 2.03 47.20 16 23 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 24 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 25 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 26 C 0.21 9.56 4.40 86.20 0.38 9.94 16 27 N -0.18 -6.09 9.10 -48.50 -0.44 -6.54 16 28 N -0.33 -10.11 10.25 -55.17 -0.57 -10.68 16 29 H 0.07 0.27 8.14 -2.38 -0.02 0.25 16 30 H 0.10 0.14 8.07 -2.39 -0.02 0.12 16 31 H 0.09 0.21 6.01 -2.39 -0.01 0.19 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.10 0.75 8.07 -2.39 -0.02 0.73 16 34 H 0.06 1.18 7.31 -2.39 -0.02 1.16 16 35 H 0.20 1.45 6.11 -2.91 -0.02 1.44 16 36 H 0.17 3.35 7.71 -2.91 -0.02 3.32 16 37 H 0.09 2.92 8.09 -2.39 -0.02 2.90 16 38 H 0.09 3.02 8.09 -2.39 -0.02 3.00 16 39 H 0.07 2.77 7.97 -2.39 -0.02 2.75 16 40 H 0.09 3.32 6.45 -2.39 -0.02 3.30 16 41 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.06 1.83 8.02 -2.39 -0.02 1.81 16 43 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.05 1.80 7.37 -2.39 -0.02 1.78 16 45 H 0.05 2.10 7.93 -2.39 -0.02 2.08 16 46 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.25 14.17 8.31 -92.70 -0.77 13.40 16 48 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 49 H 0.06 3.08 6.02 -2.39 -0.01 3.07 16 Total: -1.00 -73.04 390.56 3.35 -69.69 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.96 Total: 13.10 kcal Atomic # 6 Polarization: 23.56 SS G_CDS: 8.77 Total: 32.33 kcal Atomic # 7 Polarization: -131.61 SS G_CDS: -8.34 Total: -139.95 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.07 Total: -22.35 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -73.04 3.35 -69.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982121282.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.178 kcal (2) G-P(sol) polarization free energy of solvation -73.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds