Wall clock time and date at job start Wed Apr 1 2020 03:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46499 * 120.00105 * 2 1 4 4 C 1.38399 * 120.00210 * 179.97438 * 2 1 3 5 5 C 1.39900 * 119.99328 * 5.00364 * 4 2 1 6 6 N 1.31461 * 120.00847 * 180.02562 * 5 4 2 7 7 C 1.33272 * 120.01264 * 359.97438 * 6 5 4 8 8 C 1.47822 * 120.00336 * 180.02562 * 7 6 5 9 9 O 1.21563 * 119.99830 * 180.02562 * 8 7 6 10 10 N 1.34770 * 119.99682 * 359.97438 * 8 7 6 11 11 C 1.46508 * 119.99804 * 179.97438 * 10 8 7 12 12 C 1.51221 * 111.46136 * 291.89177 * 11 10 8 13 13 C 1.55692 * 104.60627 * 275.95883 * 12 11 10 14 14 C 1.55083 * 105.77101 * 352.89534 * 13 12 11 15 15 C 1.50526 * 102.31586 * 335.45337 * 14 13 12 16 16 H 1.09002 * 108.14935 * 293.48082 * 15 14 13 17 17 N 1.42704 * 128.13696 * 161.04589 * 15 14 13 18 18 C 1.36937 * 127.10563 * 28.98699 * 17 15 14 19 19 H 1.08006 * 119.99702 * 359.97438 * 18 17 15 20 20 C 1.38812 * 120.00206 * 179.97438 * 18 17 15 21 21 N 1.31616 * 120.00246 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99919 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46992 * 89.99989 * 22 20 18 24 24 H 1.48496 * 109.47042 * 210.00336 * 22 20 18 25 25 H 1.48502 * 109.47229 * 330.00014 * 22 20 18 26 26 C 1.49293 * 105.79455 * 208.96156 * 17 15 14 27 27 C 1.52135 * 110.70242 * 71.90826 * 11 10 8 28 28 C 1.39409 * 119.99601 * 0.27919 * 7 6 5 29 29 N 1.32054 * 119.98623 * 359.43341 * 28 7 6 30 30 H 1.09005 * 109.47132 * 269.99667 * 1 2 3 31 31 H 1.08994 * 109.47306 * 29.99562 * 1 2 3 32 32 H 1.09001 * 109.47525 * 150.00218 * 1 2 3 33 33 H 1.08998 * 109.47381 * 270.00431 * 3 2 1 34 34 H 1.09003 * 109.47208 * 30.00106 * 3 2 1 35 35 H 1.09003 * 109.47529 * 149.99830 * 3 2 1 36 36 H 1.07995 * 119.99600 * 359.97438 * 5 4 2 37 37 H 0.97000 * 120.00637 * 0.02562 * 10 8 7 38 38 H 1.08998 * 110.40801 * 34.74187 * 12 11 10 39 39 H 1.08998 * 110.40721 * 157.06093 * 12 11 10 40 40 H 1.09004 * 110.15499 * 111.86995 * 13 12 11 41 41 H 1.08997 * 110.15776 * 233.56199 * 13 12 11 42 42 H 1.08992 * 110.34937 * 217.30653 * 14 13 12 43 43 H 1.08999 * 111.05267 * 93.91783 * 14 13 12 44 44 H 0.96993 * 120.00331 * 179.97438 * 21 20 18 45 45 H 1.09000 * 110.04909 * 127.92704 * 26 17 15 46 46 H 1.08997 * 110.05337 * 249.35162 * 26 17 15 47 47 H 1.09000 * 111.15012 * 315.93141 * 27 11 10 48 48 H 1.09005 * 111.14623 * 191.70701 * 27 11 10 49 49 H 1.07999 * 120.00860 * 179.72800 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1570 -1.1985 0.0005 5 6 1.4614 -2.4078 -0.1046 6 7 2.1184 -3.5465 -0.1036 7 6 3.4473 -3.5492 -0.0030 8 6 4.1859 -4.8297 -0.0025 9 8 5.3980 -4.8321 0.0898 10 7 3.5154 -5.9943 -0.1032 11 6 4.2474 -7.2634 -0.1033 12 6 5.0743 -7.4251 -1.3590 13 6 4.0806 -7.9961 -2.4128 14 6 2.7726 -8.3003 -1.6371 15 6 3.2711 -8.4927 -0.2299 16 1 3.8859 -9.3925 -0.2075 17 7 2.5252 -8.4328 0.9852 18 6 1.1995 -8.7300 1.1563 19 1 0.6046 -9.0496 0.3133 20 6 0.6201 -8.6205 2.4130 21 7 1.3449 -8.2306 3.4401 22 14 -1.1886 -9.0253 2.6461 23 1 -1.3348 -10.4654 2.9775 24 1 -1.7409 -8.2039 3.7531 25 1 -1.9279 -8.7282 1.3929 26 6 3.4888 -7.9798 2.0317 27 6 4.7964 -7.5677 1.2825 28 6 4.1404 -2.3446 0.1071 29 7 3.4808 -1.2007 0.1004 30 1 -0.3634 -0.0001 1.0277 31 1 -0.3633 0.8900 -0.5137 32 1 -0.3634 -0.8900 -0.5138 33 1 2.3791 1.5834 -1.0276 34 1 1.6084 2.0284 0.5139 35 1 3.1499 1.1384 0.5139 36 1 0.3845 -2.4059 -0.1858 37 1 2.5481 -5.9925 -0.1765 38 1 5.4619 -6.4601 -1.6858 39 1 5.8928 -8.1243 -1.1877 40 1 3.8918 -7.2562 -3.1906 41 1 4.4829 -8.9086 -2.8526 42 1 2.3109 -9.2122 -2.0155 43 1 2.0793 -7.4611 -1.6941 44 1 0.9400 -8.1537 4.3181 45 1 3.0811 -7.1241 2.5699 46 1 3.6960 -8.7937 2.7265 47 1 5.2442 -6.6811 1.7315 48 1 5.5083 -8.3925 1.2511 49 1 5.2170 -2.3468 0.1931 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990683893.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:05 Heat of formation + Delta-G solvation = 75.392892 kcal Electronic energy + Delta-G solvation = -31531.718299 eV Core-core repulsion = 27495.745030 eV Total energy + Delta-G solvation = -4035.973269 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.21836 -40.26213 -38.08562 -36.96763 -34.41296 -34.23287 -32.84969 -31.67570 -30.89130 -29.67957 -28.75937 -26.87991 -26.52287 -25.59972 -24.19993 -23.99586 -22.89782 -20.98145 -20.40763 -19.56854 -18.70040 -17.97240 -17.68533 -17.21922 -16.42735 -15.87442 -15.64045 -15.21774 -14.90443 -14.76098 -14.56099 -14.35495 -14.31351 -13.91647 -13.83917 -13.26569 -13.19613 -12.93595 -12.67523 -12.55269 -12.33884 -12.28055 -11.84726 -11.48140 -11.40252 -11.35984 -11.24028 -10.96051 -10.88851 -10.74115 -10.45091 -10.25544 -10.18578 -9.97877 -9.91178 -9.77461 -9.64103 -9.26823 -8.92617 -8.62168 -8.39854 -7.88981 -6.81960 -5.70358 -3.04669 0.70063 1.16808 2.48357 3.10296 3.40318 3.45471 3.47196 3.61471 4.03023 4.18645 4.23344 4.35881 4.49111 4.68900 4.75388 4.89075 4.95223 5.09836 5.19790 5.27129 5.28383 5.30757 5.36291 5.52357 5.53069 5.55375 5.66548 5.80504 5.88159 6.01973 6.03999 6.11630 6.21111 6.31503 6.38574 6.41009 6.43624 6.50190 6.56684 6.72254 6.83263 6.89014 6.97193 7.24961 7.37313 7.56254 7.65309 7.76509 7.82469 8.21016 8.24148 8.75382 9.17315 9.84150 10.53164 11.41935 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.009528 B = 0.003922 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2937.963214 B = 7138.291818 C = 8956.991736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.603 5.603 3 C 0.094 3.906 4 C 0.366 3.634 5 C -0.005 4.005 6 N -0.367 5.367 7 C -0.038 4.038 8 C 0.579 3.421 9 O -0.550 6.550 10 N -0.668 5.668 11 C 0.129 3.871 12 C -0.111 4.111 13 C -0.116 4.116 14 C -0.115 4.115 15 C 0.159 3.841 16 H 0.024 0.976 17 N -0.583 5.583 18 C -0.229 4.229 19 H 0.079 0.921 20 C -0.003 4.003 21 N -0.918 5.918 22 Si 0.908 3.092 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.281 1.281 26 C 0.179 3.821 27 C -0.139 4.139 28 C 0.164 3.836 29 N -0.510 5.510 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.170 0.830 37 H 0.413 0.587 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.252 0.748 45 H 0.064 0.936 46 H 0.035 0.965 47 H 0.068 0.932 48 H 0.065 0.935 49 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.267 15.344 -9.655 18.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.316 5.316 3 C -0.049 4.049 4 C 0.126 3.874 5 C -0.177 4.177 6 N -0.082 5.082 7 C -0.179 4.179 8 C 0.363 3.637 9 O -0.428 6.428 10 N -0.317 5.317 11 C 0.041 3.959 12 C -0.150 4.150 13 C -0.154 4.154 14 C -0.154 4.154 15 C 0.049 3.951 16 H 0.041 0.959 17 N -0.306 5.306 18 C -0.357 4.357 19 H 0.097 0.903 20 C -0.200 4.200 21 N -0.565 5.565 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C 0.055 3.945 27 C -0.178 4.178 28 C 0.003 3.997 29 N -0.232 5.232 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.186 0.814 37 H 0.251 0.749 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.062 0.938 45 H 0.083 0.917 46 H 0.053 0.947 47 H 0.086 0.914 48 H 0.084 0.916 49 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 1.858 15.425 -9.385 18.151 hybrid contribution -1.584 -0.095 0.316 1.618 sum 0.274 15.330 -9.069 17.814 Atomic orbital electron populations 1.21860 0.77680 1.03591 1.02341 1.46145 1.05600 1.02985 1.76820 1.21672 0.97907 0.83684 1.01637 1.19605 0.89912 0.87510 0.90351 1.23221 1.01391 0.86569 1.06507 1.68218 1.07799 1.28544 1.03668 1.21881 0.90568 0.95961 1.09449 1.17431 0.86456 0.82672 0.77097 1.90733 1.12924 1.87180 1.52013 1.45557 1.11485 1.03988 1.70682 1.21588 0.94960 0.85031 0.94307 1.21862 0.97350 1.01334 0.94437 1.22615 0.95195 1.00057 0.97575 1.21643 0.96863 1.01374 0.95523 1.20832 0.92139 0.93729 0.88423 0.95911 1.43656 1.06718 1.78263 1.02007 1.19003 0.83685 1.38663 0.94314 0.90325 1.24772 0.97978 1.01537 0.95723 1.69918 1.34400 1.52632 0.99543 0.86176 0.84890 0.77698 0.77318 1.21704 1.21828 1.20676 1.22006 0.84276 0.98724 0.89501 1.22800 0.99191 1.00669 0.95121 1.23465 1.01529 0.86005 0.88712 1.68078 1.06253 1.29629 1.19263 0.92155 0.90488 0.90493 0.93031 0.91444 0.89950 0.81359 0.74940 0.91213 0.91066 0.92333 0.91944 0.91935 0.91509 0.93782 0.91750 0.94689 0.91354 0.91624 0.80250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.53 10.28 59.84 0.62 1.14 16 2 N -0.60 -5.62 3.37 -189.51 -0.64 -6.26 16 3 C 0.09 0.70 10.50 59.85 0.63 1.33 16 4 C 0.37 4.61 7.37 -155.01 -1.14 3.46 16 5 C 0.00 -0.06 10.42 -17.09 -0.18 -0.24 16 6 N -0.37 -6.00 9.69 -9.44 -0.09 -6.09 16 7 C -0.04 -0.63 6.74 -82.89 -0.56 -1.19 16 8 C 0.58 10.82 7.11 -12.34 -0.09 10.73 16 9 O -0.55 -10.92 14.48 5.31 0.08 -10.84 16 10 N -0.67 -12.80 4.34 -47.51 -0.21 -13.00 16 11 C 0.13 2.45 0.42 -130.70 -0.05 2.39 16 12 C -0.11 -1.81 6.06 -26.19 -0.16 -1.97 16 13 C -0.12 -1.71 6.91 -24.20 -0.17 -1.87 16 14 C -0.12 -1.99 6.37 -26.87 -0.17 -2.17 16 15 C 0.16 3.26 2.65 -68.72 -0.18 3.08 16 16 H 0.02 0.49 7.99 -51.93 -0.41 0.08 16 17 N -0.58 -14.39 3.10 -162.68 -0.50 -14.89 16 18 C -0.23 -6.15 10.29 -15.06 -0.15 -6.30 16 19 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 20 C 0.00 -0.10 5.49 -17.43 -0.10 -0.19 16 21 N -0.92 -26.70 10.55 55.49 0.59 -26.12 16 22 Si 0.91 21.82 29.55 -169.99 -5.02 16.80 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 C 0.18 4.38 5.32 -0.76 0.00 4.38 16 27 C -0.14 -2.84 6.21 -25.44 -0.16 -3.00 16 28 C 0.16 2.43 10.76 -17.02 -0.18 2.24 16 29 N -0.51 -7.05 9.22 -11.95 -0.11 -7.16 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.30 8.07 -51.93 -0.42 -0.12 16 32 H 0.08 0.42 5.98 -51.93 -0.31 0.11 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.35 8.07 -51.93 -0.42 -0.07 16 35 H 0.08 0.73 7.30 -51.93 -0.38 0.35 16 36 H 0.17 1.73 6.02 -52.49 -0.32 1.41 16 37 H 0.41 8.39 7.12 -40.82 -0.29 8.10 16 38 H 0.07 1.18 6.86 -51.93 -0.36 0.82 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.07 1.19 7.36 -51.93 -0.38 0.81 16 44 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 45 H 0.06 1.77 7.05 -51.93 -0.37 1.41 16 46 H 0.03 0.93 7.98 -51.93 -0.41 0.51 16 47 H 0.07 1.44 7.15 -51.93 -0.37 1.06 16 48 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 49 H 0.18 2.40 7.63 -52.49 -0.40 2.00 16 LS Contribution 386.25 15.07 5.82 5.82 Total: -1.00 -32.21 386.25 -9.49 -41.70 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -7.35 Total: 8.22 kcal Atomic # 6 Polarization: 13.88 SS G_CDS: -2.05 Total: 11.83 kcal Atomic # 7 Polarization: -72.56 SS G_CDS: -0.97 Total: -73.53 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.08 Total: -10.84 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.21 -9.49 -41.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990683893.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.096 kcal (2) G-P(sol) polarization free energy of solvation -32.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds