Wall clock time and date at job start Wed Apr 1 2020 03:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46499 * 120.00105 * 2 1 4 4 C 1.38399 * 120.00210 * 179.97438 * 2 1 3 5 5 C 1.39900 * 119.99328 * 5.00364 * 4 2 1 6 6 N 1.31461 * 120.00847 * 180.02562 * 5 4 2 7 7 C 1.33272 * 120.01264 * 359.97438 * 6 5 4 8 8 C 1.47822 * 120.00336 * 180.02562 * 7 6 5 9 9 O 1.21563 * 119.99830 * 180.02562 * 8 7 6 10 10 N 1.34770 * 119.99682 * 359.97438 * 8 7 6 11 11 C 1.46508 * 119.99804 * 179.97438 * 10 8 7 12 12 C 1.51221 * 111.46136 * 291.89177 * 11 10 8 13 13 C 1.55692 * 104.60627 * 275.95883 * 12 11 10 14 14 C 1.55083 * 105.77101 * 352.89534 * 13 12 11 15 15 C 1.50526 * 102.31586 * 335.45337 * 14 13 12 16 16 H 1.09002 * 108.14935 * 293.48082 * 15 14 13 17 17 N 1.42704 * 128.13696 * 161.04589 * 15 14 13 18 18 C 1.36937 * 127.10563 * 28.98699 * 17 15 14 19 19 H 1.08006 * 119.99702 * 359.97438 * 18 17 15 20 20 C 1.38812 * 120.00206 * 179.97438 * 18 17 15 21 21 N 1.31616 * 120.00246 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99919 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46992 * 89.99989 * 22 20 18 24 24 H 1.48496 * 109.47042 * 210.00336 * 22 20 18 25 25 H 1.48502 * 109.47229 * 330.00014 * 22 20 18 26 26 C 1.49293 * 105.79455 * 208.96156 * 17 15 14 27 27 C 1.52135 * 110.70242 * 71.90826 * 11 10 8 28 28 C 1.39409 * 119.99601 * 0.27919 * 7 6 5 29 29 N 1.32054 * 119.98623 * 359.43341 * 28 7 6 30 30 H 1.09005 * 109.47132 * 269.99667 * 1 2 3 31 31 H 1.08994 * 109.47306 * 29.99562 * 1 2 3 32 32 H 1.09001 * 109.47525 * 150.00218 * 1 2 3 33 33 H 1.08998 * 109.47381 * 270.00431 * 3 2 1 34 34 H 1.09003 * 109.47208 * 30.00106 * 3 2 1 35 35 H 1.09003 * 109.47529 * 149.99830 * 3 2 1 36 36 H 1.07995 * 119.99600 * 359.97438 * 5 4 2 37 37 H 0.97000 * 120.00637 * 0.02562 * 10 8 7 38 38 H 1.08998 * 110.40801 * 34.74187 * 12 11 10 39 39 H 1.08998 * 110.40721 * 157.06093 * 12 11 10 40 40 H 1.09004 * 110.15499 * 111.86995 * 13 12 11 41 41 H 1.08997 * 110.15776 * 233.56199 * 13 12 11 42 42 H 1.08992 * 110.34937 * 217.30653 * 14 13 12 43 43 H 1.08999 * 111.05267 * 93.91783 * 14 13 12 44 44 H 0.96993 * 120.00331 * 179.97438 * 21 20 18 45 45 H 1.09000 * 110.04909 * 127.92704 * 26 17 15 46 46 H 1.08997 * 110.05337 * 249.35162 * 26 17 15 47 47 H 1.09000 * 111.15012 * 315.93141 * 27 11 10 48 48 H 1.09005 * 111.14623 * 191.70701 * 27 11 10 49 49 H 1.07999 * 120.00860 * 179.72800 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1570 -1.1985 0.0005 5 6 1.4614 -2.4078 -0.1046 6 7 2.1184 -3.5465 -0.1036 7 6 3.4473 -3.5492 -0.0030 8 6 4.1859 -4.8297 -0.0025 9 8 5.3980 -4.8321 0.0898 10 7 3.5154 -5.9943 -0.1032 11 6 4.2474 -7.2634 -0.1033 12 6 5.0743 -7.4251 -1.3590 13 6 4.0806 -7.9961 -2.4128 14 6 2.7726 -8.3003 -1.6371 15 6 3.2711 -8.4927 -0.2299 16 1 3.8859 -9.3925 -0.2075 17 7 2.5252 -8.4328 0.9852 18 6 1.1995 -8.7300 1.1563 19 1 0.6046 -9.0496 0.3133 20 6 0.6201 -8.6205 2.4130 21 7 1.3449 -8.2306 3.4401 22 14 -1.1886 -9.0253 2.6461 23 1 -1.3348 -10.4654 2.9775 24 1 -1.7409 -8.2039 3.7531 25 1 -1.9279 -8.7282 1.3929 26 6 3.4888 -7.9798 2.0317 27 6 4.7964 -7.5677 1.2825 28 6 4.1404 -2.3446 0.1071 29 7 3.4808 -1.2007 0.1004 30 1 -0.3634 -0.0001 1.0277 31 1 -0.3633 0.8900 -0.5137 32 1 -0.3634 -0.8900 -0.5138 33 1 2.3791 1.5834 -1.0276 34 1 1.6084 2.0284 0.5139 35 1 3.1499 1.1384 0.5139 36 1 0.3845 -2.4059 -0.1858 37 1 2.5481 -5.9925 -0.1765 38 1 5.4619 -6.4601 -1.6858 39 1 5.8928 -8.1243 -1.1877 40 1 3.8918 -7.2562 -3.1906 41 1 4.4829 -8.9086 -2.8526 42 1 2.3109 -9.2122 -2.0155 43 1 2.0793 -7.4611 -1.6941 44 1 0.9400 -8.1537 4.3181 45 1 3.0811 -7.1241 2.5699 46 1 3.6960 -8.7937 2.7265 47 1 5.2442 -6.6811 1.7315 48 1 5.5083 -8.3925 1.2511 49 1 5.2170 -2.3468 0.1931 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000990683893.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:04 Heat of formation + Delta-G solvation = 54.515389 kcal Electronic energy + Delta-G solvation = -31532.623616 eV Core-core repulsion = 27495.745030 eV Total energy + Delta-G solvation = -4036.878586 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.36860 -41.70844 -39.46583 -37.90591 -36.16777 -35.33595 -34.31269 -33.51367 -32.11061 -31.28469 -29.37153 -28.52384 -27.69915 -26.94583 -25.92097 -25.22248 -23.92417 -22.36250 -21.96260 -21.21207 -20.14945 -19.23674 -18.68779 -18.33624 -18.25447 -17.30604 -16.77900 -16.43098 -16.28228 -16.15717 -15.74480 -15.69930 -15.59639 -15.38992 -15.26710 -14.53319 -14.42729 -14.13590 -14.03971 -13.51501 -13.44575 -13.30245 -13.03763 -12.96498 -12.93222 -12.83984 -12.64434 -12.51259 -12.39171 -12.14115 -12.10288 -12.02062 -11.78936 -11.55127 -11.34869 -11.21104 -11.13420 -10.82194 -10.68263 -10.12893 -9.89307 -8.84545 -8.78560 -7.80908 -5.16454 -0.41768 0.08899 1.48018 1.49397 1.57867 1.69897 1.80899 2.25787 2.52690 2.83514 3.09610 3.13592 3.23562 3.36403 3.39477 3.75554 3.92230 3.94615 4.03680 4.12259 4.22193 4.30051 4.36371 4.42248 4.45954 4.47897 4.55096 4.60887 4.65469 4.74708 4.82450 4.89755 4.91652 4.96973 4.99989 5.09147 5.09658 5.13607 5.25263 5.30108 5.51555 5.58017 5.62411 5.65017 5.69962 5.81157 5.96052 6.20686 6.32457 6.61187 6.82179 7.07027 7.29079 7.79843 8.52228 9.31027 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.009528 B = 0.003922 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2937.963214 B = 7138.291818 C = 8956.991736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.592 5.592 3 C 0.088 3.912 4 C 0.369 3.631 5 C -0.004 4.004 6 N -0.393 5.393 7 C -0.073 4.073 8 C 0.579 3.421 9 O -0.569 6.569 10 N -0.673 5.673 11 C 0.135 3.865 12 C -0.106 4.106 13 C -0.102 4.102 14 C -0.110 4.110 15 C 0.146 3.854 16 H 0.024 0.976 17 N -0.597 5.597 18 C -0.230 4.230 19 H 0.088 0.912 20 C -0.062 4.062 21 N -0.951 5.951 22 Si 0.973 3.027 23 H -0.290 1.290 24 H -0.300 1.300 25 H -0.265 1.265 26 C 0.192 3.808 27 C -0.128 4.128 28 C 0.171 3.829 29 N -0.520 5.520 30 H 0.068 0.932 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.096 0.904 35 H 0.066 0.934 36 H 0.197 0.803 37 H 0.406 0.594 38 H 0.064 0.936 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.057 0.943 44 H 0.244 0.756 45 H 0.025 0.975 46 H 0.003 0.997 47 H 0.059 0.941 48 H 0.084 0.916 49 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.091 16.770 -11.969 20.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.303 5.303 3 C -0.054 4.054 4 C 0.126 3.874 5 C -0.179 4.179 6 N -0.108 5.108 7 C -0.212 4.212 8 C 0.365 3.635 9 O -0.449 6.449 10 N -0.321 5.321 11 C 0.047 3.953 12 C -0.145 4.145 13 C -0.140 4.140 14 C -0.149 4.149 15 C 0.037 3.963 16 H 0.041 0.959 17 N -0.320 5.320 18 C -0.359 4.359 19 H 0.105 0.895 20 C -0.255 4.255 21 N -0.600 5.600 22 Si 0.802 3.198 23 H -0.217 1.217 24 H -0.227 1.227 25 H -0.189 1.189 26 C 0.067 3.933 27 C -0.167 4.167 28 C 0.010 3.990 29 N -0.244 5.244 30 H 0.087 0.913 31 H 0.124 0.876 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.115 0.885 35 H 0.085 0.915 36 H 0.214 0.786 37 H 0.242 0.758 38 H 0.083 0.917 39 H 0.104 0.896 40 H 0.092 0.908 41 H 0.107 0.893 42 H 0.091 0.909 43 H 0.076 0.924 44 H 0.053 0.947 45 H 0.043 0.957 46 H 0.021 0.979 47 H 0.077 0.923 48 H 0.103 0.897 49 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 0.689 16.874 -11.747 20.572 hybrid contribution -1.319 -0.347 1.048 1.721 sum -0.630 16.527 -10.699 19.698 Atomic orbital electron populations 1.22189 0.75422 1.05389 1.03416 1.46599 1.07087 1.02445 1.74124 1.21857 0.97702 0.83325 1.02527 1.19879 0.89707 0.88730 0.89063 1.23703 1.02561 0.86055 1.05538 1.68124 1.07853 1.30248 1.04561 1.21565 0.91012 0.95409 1.13200 1.17717 0.86387 0.83194 0.76234 1.90697 1.13637 1.87607 1.52972 1.45577 1.11031 1.04315 1.71198 1.21611 0.94690 0.84567 0.94389 1.21867 0.97775 1.01689 0.93153 1.22555 0.92990 1.01585 0.96890 1.21640 0.98225 1.01525 0.93488 1.21065 0.92246 0.94248 0.88746 0.95894 1.43774 1.06379 1.78099 1.03729 1.19389 0.84826 1.37236 0.94442 0.89470 1.25567 1.01966 1.02354 0.95644 1.70149 1.35868 1.54456 0.99576 0.85149 0.80317 0.76950 0.77353 1.21713 1.22666 1.18941 1.21656 0.86106 0.95902 0.89589 1.22658 0.97326 1.00808 0.95870 1.23506 1.01833 0.85780 0.87889 1.68161 1.06965 1.28845 1.20422 0.91349 0.87617 0.89868 0.91977 0.88503 0.91531 0.78611 0.75770 0.91692 0.89570 0.90819 0.89335 0.90936 0.92387 0.94720 0.95702 0.97913 0.92265 0.89739 0.79674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.65 10.28 127.77 1.31 1.97 16 2 N -0.59 -9.44 3.37 -753.49 -2.54 -11.98 16 3 C 0.09 1.07 10.50 127.77 1.34 2.41 16 4 C 0.37 8.77 7.37 133.35 0.98 9.75 16 5 C 0.00 -0.10 10.42 85.15 0.89 0.78 16 6 N -0.39 -12.98 9.69 -183.78 -1.78 -14.76 16 7 C -0.07 -2.51 6.74 41.75 0.28 -2.23 16 8 C 0.58 22.25 7.11 86.78 0.62 22.87 16 9 O -0.57 -23.11 14.48 -3.91 -0.06 -23.17 16 10 N -0.67 -26.37 4.34 -422.51 -1.83 -28.20 16 11 C 0.14 5.13 0.42 4.32 0.00 5.13 16 12 C -0.11 -3.28 6.06 30.94 0.19 -3.09 16 13 C -0.10 -2.71 6.91 32.24 0.22 -2.48 16 14 C -0.11 -3.63 6.37 30.51 0.19 -3.44 16 15 C 0.15 5.93 2.65 46.47 0.12 6.05 16 16 H 0.02 0.97 7.99 -2.39 -0.02 0.95 16 17 N -0.60 -30.17 3.10 -668.59 -2.07 -32.24 16 18 C -0.23 -12.56 10.29 84.03 0.86 -11.70 16 19 H 0.09 4.51 7.83 -2.91 -0.02 4.48 16 20 C -0.06 -3.53 5.49 84.86 0.47 -3.06 16 21 N -0.95 -57.83 10.55 21.65 0.23 -57.60 16 22 Si 0.97 45.57 29.55 68.60 2.03 47.60 16 23 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 24 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 25 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 26 C 0.19 9.91 5.32 86.96 0.46 10.37 16 27 C -0.13 -5.37 6.21 31.43 0.20 -5.17 16 28 C 0.17 5.14 10.76 84.94 0.91 6.05 16 29 N -0.52 -14.13 9.22 -191.73 -1.77 -15.90 16 30 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.11 0.36 8.07 -2.39 -0.02 0.34 16 32 H 0.08 0.64 5.98 -2.39 -0.01 0.63 16 33 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.10 0.64 8.07 -2.39 -0.02 0.62 16 35 H 0.07 1.07 7.30 -2.39 -0.02 1.05 16 36 H 0.20 3.63 6.02 -2.91 -0.02 3.61 16 37 H 0.41 16.99 7.12 -92.71 -0.66 16.33 16 38 H 0.06 2.11 6.86 -2.39 -0.02 2.09 16 39 H 0.09 2.40 8.14 -2.39 -0.02 2.39 16 40 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 41 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.06 2.01 7.36 -2.39 -0.02 1.99 16 44 H 0.24 14.56 8.31 -92.71 -0.77 13.79 16 45 H 0.02 1.46 7.05 -2.39 -0.02 1.44 16 46 H 0.00 0.15 7.98 -2.39 -0.02 0.13 16 47 H 0.06 2.59 7.15 -2.39 -0.02 2.57 16 48 H 0.08 3.19 8.14 -2.38 -0.02 3.17 16 49 H 0.19 5.12 7.63 -2.91 -0.02 5.09 16 Total: -1.00 -73.06 386.25 1.57 -71.49 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: 0.32 Total: 30.53 kcal Atomic # 6 Polarization: 25.18 SS G_CDS: 9.06 Total: 34.23 kcal Atomic # 7 Polarization: -150.92 SS G_CDS: -9.77 Total: -160.69 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.06 Total: -23.17 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -73.06 1.57 -71.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990683893.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.009 kcal (2) G-P(sol) polarization free energy of solvation -73.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds