Wall clock time and date at job start Wed Apr 1 2020 03:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 120.00301 * 2 1 4 4 C 1.38403 * 119.99429 * 180.02562 * 2 1 3 5 5 C 1.39883 * 119.99985 * 5.00110 * 4 2 1 6 6 N 1.31458 * 120.01215 * 179.97438 * 5 4 2 7 7 C 1.33274 * 120.00972 * 0.02562 * 6 5 4 8 8 C 1.47827 * 120.00133 * 179.97438 * 7 6 5 9 9 O 1.21564 * 120.00098 * 180.02562 * 8 7 6 10 10 N 1.34770 * 120.00040 * 0.02562 * 8 7 6 11 11 C 1.46501 * 120.00049 * 180.02562 * 10 8 7 12 12 C 1.53791 * 112.56469 * 300.61698 * 11 10 8 13 13 C 1.54219 * 106.57691 * 238.41593 * 12 11 10 14 14 C 1.54750 * 104.27582 * 335.23040 * 13 12 11 15 15 C 1.54774 * 103.21497 * 37.73659 * 14 13 12 16 16 H 1.09008 * 111.86637 * 85.85865 * 15 14 13 17 17 N 1.46985 * 108.68288 * 209.79813 * 15 14 13 18 18 C 1.36930 * 125.58202 * 294.12441 * 17 15 14 19 19 H 1.07997 * 120.00061 * 359.97438 * 18 17 15 20 20 C 1.38819 * 119.99980 * 179.97438 * 18 17 15 21 21 N 1.31623 * 119.99669 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99859 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47267 * 60.00013 * 22 20 18 24 24 H 1.48505 * 109.46623 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47090 * 299.99630 * 22 20 18 26 26 C 1.47370 * 108.83443 * 114.12161 * 17 15 14 27 27 C 1.54862 * 104.82892 * 335.31436 * 26 17 15 28 28 C 1.39407 * 119.99758 * 0.27533 * 7 6 5 29 29 N 1.32051 * 119.98081 * 359.41020 * 28 7 6 30 30 H 1.09000 * 109.46873 * 270.00442 * 1 2 3 31 31 H 1.08999 * 109.46964 * 29.99697 * 1 2 3 32 32 H 1.08995 * 109.47638 * 149.99622 * 1 2 3 33 33 H 1.08999 * 109.47334 * 270.00249 * 3 2 1 34 34 H 1.09006 * 109.46807 * 30.00242 * 3 2 1 35 35 H 1.08998 * 109.47148 * 149.99858 * 3 2 1 36 36 H 1.08000 * 119.99344 * 359.97438 * 5 4 2 37 37 H 0.97002 * 120.00319 * 0.02562 * 10 8 7 38 38 H 1.09008 * 109.98415 * 119.19004 * 12 11 10 39 39 H 1.08999 * 110.14899 * 357.73619 * 12 11 10 40 40 H 1.09002 * 110.49653 * 216.49159 * 13 12 11 41 41 H 1.09002 * 110.49371 * 93.96509 * 13 12 11 42 42 H 1.09005 * 110.67275 * 156.17501 * 14 13 12 43 43 H 1.09006 * 110.66835 * 279.30723 * 14 13 12 44 44 H 0.96999 * 119.99127 * 179.97438 * 21 20 18 45 45 H 1.09001 * 110.37041 * 94.15446 * 26 17 15 46 46 H 1.08999 * 110.36816 * 216.47354 * 26 17 15 47 47 H 1.08998 * 110.96983 * 155.18350 * 27 26 17 48 48 H 1.08993 * 110.96817 * 278.95578 * 27 26 17 49 49 H 1.07999 * 120.00556 * 179.70539 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1569 -1.1987 -0.0005 5 6 1.4614 -2.4077 -0.1067 6 7 2.1184 -3.5463 -0.1077 7 6 3.4473 -3.5492 -0.0071 8 6 4.1858 -4.8298 -0.0078 9 8 5.3980 -4.8324 0.0845 10 7 3.5153 -5.9943 -0.1106 11 6 4.2472 -7.2634 -0.1106 12 6 5.2594 -7.3609 -1.2644 13 6 4.8699 -8.6056 -2.0874 14 6 4.1109 -9.5052 -1.0827 15 6 3.3053 -8.4896 -0.2370 16 1 2.3511 -8.2408 -0.7017 17 7 3.1277 -9.0386 1.1149 18 6 2.3964 -10.1518 1.4330 19 1 1.8893 -10.7049 0.6563 20 6 2.3069 -10.5693 2.7539 21 7 2.9254 -9.8954 3.7004 22 14 1.3087 -12.0874 3.1879 23 1 1.8651 -13.2659 2.4761 24 1 1.3724 -12.3193 4.6534 25 1 -0.1044 -11.8841 2.7794 26 6 3.8655 -8.1950 2.0717 27 6 4.9780 -7.5217 1.2307 28 6 4.1404 -2.3448 0.1050 29 7 3.4808 -1.2009 0.0998 30 1 -0.3633 0.0001 1.0277 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3634 -0.8899 -0.5139 33 1 2.3792 1.5834 -1.0276 34 1 1.6085 2.0283 0.5139 35 1 3.1500 1.1383 0.5138 36 1 0.3844 -2.4056 -0.1878 37 1 2.5482 -5.9923 -0.1845 38 1 6.2676 -7.4771 -0.8666 39 1 5.2045 -6.4688 -1.8883 40 1 5.7611 -9.1133 -2.4565 41 1 4.2198 -8.3267 -2.9166 42 1 3.4408 -10.1869 -1.6066 43 1 4.8109 -10.0580 -0.4561 44 1 2.8625 -10.1870 4.6234 45 1 3.2053 -7.4411 2.5005 46 1 4.3038 -8.8085 2.8589 47 1 5.2988 -6.5851 1.6867 48 1 5.8232 -8.1956 1.0910 49 1 5.2169 -2.3473 0.1913 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990683897.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:08 Heat of formation + Delta-G solvation = 62.831440 kcal Electronic energy + Delta-G solvation = -30885.899437 eV Core-core repulsion = 26849.381463 eV Total energy + Delta-G solvation = -4036.517975 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.35197 -39.93828 -38.10565 -37.10378 -34.45521 -34.14498 -33.19795 -31.45903 -31.01531 -29.60799 -28.87577 -26.78400 -26.65237 -25.65748 -24.33036 -23.78279 -22.97239 -21.26160 -19.93883 -19.80073 -18.75128 -18.03025 -17.83527 -17.26832 -16.90190 -16.00484 -15.56721 -15.35451 -14.98967 -14.82118 -14.78241 -14.61834 -14.13297 -13.75351 -13.57086 -13.40749 -13.07782 -13.00323 -12.79147 -12.73122 -12.45651 -12.11653 -11.77348 -11.65976 -11.61006 -11.44342 -11.10626 -10.93641 -10.79134 -10.61845 -10.46592 -10.33012 -10.15251 -10.07259 -9.91015 -9.82223 -9.61081 -9.49978 -9.11632 -8.60295 -8.48127 -8.03039 -6.79649 -5.59274 -3.02241 0.54701 1.00394 2.35589 2.93024 3.40046 3.43135 3.47313 3.48528 3.85465 4.03486 4.07106 4.20103 4.51770 4.63366 4.76869 4.83488 4.89578 4.99558 5.10723 5.17446 5.18960 5.22980 5.37052 5.41072 5.45252 5.57012 5.72296 5.88172 5.93459 5.95932 6.06901 6.16470 6.21774 6.27772 6.35543 6.43884 6.48933 6.61107 6.66742 6.69325 6.84209 6.86406 7.05785 7.16065 7.23211 7.59661 7.62060 7.69685 7.91800 7.97824 8.42245 8.54269 9.26755 9.87789 10.52539 11.43158 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.013546 B = 0.002809 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.526576 B = 9966.990376 C =11106.025463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.602 5.602 3 C 0.093 3.907 4 C 0.368 3.632 5 C -0.006 4.006 6 N -0.372 5.372 7 C -0.041 4.041 8 C 0.581 3.419 9 O -0.537 6.537 10 N -0.684 5.684 11 C 0.160 3.840 12 C -0.109 4.109 13 C -0.125 4.125 14 C -0.129 4.129 15 C 0.161 3.839 16 H 0.048 0.952 17 N -0.595 5.595 18 C -0.219 4.219 19 H 0.076 0.924 20 C -0.011 4.011 21 N -0.921 5.921 22 Si 0.913 3.087 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.287 1.287 26 C 0.152 3.848 27 C -0.141 4.141 28 C 0.168 3.832 29 N -0.509 5.509 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.170 0.830 37 H 0.408 0.592 38 H 0.071 0.929 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.074 0.926 44 H 0.252 0.748 45 H 0.009 0.991 46 H 0.108 0.892 47 H 0.066 0.934 48 H 0.068 0.932 49 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.623 20.229 -10.092 22.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.314 5.314 3 C -0.050 4.050 4 C 0.128 3.872 5 C -0.178 4.178 6 N -0.088 5.088 7 C -0.182 4.182 8 C 0.365 3.635 9 O -0.414 6.414 10 N -0.333 5.333 11 C 0.074 3.926 12 C -0.148 4.148 13 C -0.163 4.163 14 C -0.169 4.169 15 C 0.053 3.947 16 H 0.065 0.935 17 N -0.319 5.319 18 C -0.347 4.347 19 H 0.094 0.906 20 C -0.206 4.206 21 N -0.569 5.569 22 Si 0.744 3.256 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.213 1.213 26 C 0.028 3.972 27 C -0.181 4.181 28 C 0.007 3.993 29 N -0.231 5.231 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.187 0.813 37 H 0.244 0.756 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.093 0.907 44 H 0.062 0.938 45 H 0.027 0.973 46 H 0.125 0.875 47 H 0.084 0.916 48 H 0.087 0.913 49 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -1.894 20.220 -9.794 22.547 hybrid contribution -1.223 -0.557 0.257 1.368 sum -3.117 19.663 -9.537 22.075 Atomic orbital electron populations 1.21872 0.77622 1.03657 1.02361 1.46181 1.05654 1.03029 1.76523 1.21695 0.97938 0.83611 1.01759 1.19610 0.89911 0.87542 0.90138 1.23197 1.01363 0.86602 1.06683 1.68161 1.07866 1.28713 1.04038 1.21842 0.90547 0.95921 1.09870 1.17424 0.86557 0.82544 0.76963 1.90772 1.12813 1.87012 1.50842 1.45720 1.11085 1.04603 1.71887 1.21718 0.92481 0.81958 0.96422 1.22288 0.98788 0.97679 0.96073 1.22363 0.99706 0.96326 0.97895 1.22946 0.99114 0.97809 0.97033 1.21805 0.94476 0.90021 0.88437 0.93493 1.44518 1.58213 1.28985 1.00218 1.18987 1.22609 1.00730 0.92370 0.90584 1.24779 1.00874 0.99317 0.95676 1.69801 1.46885 1.40304 0.99925 0.86178 0.79712 0.82609 0.77133 1.21212 1.21693 1.21331 1.21971 0.89946 0.92539 0.92763 1.23331 0.99145 1.00408 0.95193 1.23498 1.01639 0.85920 0.88276 1.68101 1.06243 1.29603 1.19184 0.92102 0.90393 0.90513 0.92920 0.91341 0.89885 0.81274 0.75600 0.91057 0.92268 0.92266 0.92411 0.92388 0.90704 0.93767 0.97331 0.87452 0.91571 0.91298 0.80096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.39 10.28 59.85 0.62 1.00 16 2 N -0.60 -4.72 3.37 -189.51 -0.64 -5.36 16 3 C 0.09 0.58 10.50 59.84 0.63 1.21 16 4 C 0.37 4.03 7.37 -155.01 -1.14 2.88 16 5 C -0.01 -0.07 10.42 -17.10 -0.18 -0.25 16 6 N -0.37 -5.20 9.69 -9.44 -0.09 -5.29 16 7 C -0.04 -0.61 6.74 -82.88 -0.56 -1.17 16 8 C 0.58 9.96 6.97 -12.34 -0.09 9.88 16 9 O -0.54 -10.11 14.21 5.31 0.08 -10.03 16 10 N -0.68 -12.01 5.24 -46.19 -0.24 -12.25 16 11 C 0.16 3.02 0.74 -129.27 -0.10 2.92 16 12 C -0.11 -1.84 5.24 -25.68 -0.13 -1.98 16 13 C -0.12 -1.93 6.83 -25.17 -0.17 -2.10 16 14 C -0.13 -2.38 6.21 -24.88 -0.15 -2.54 16 15 C 0.16 3.31 3.64 -65.60 -0.24 3.07 16 16 H 0.05 0.97 8.02 -51.92 -0.42 0.55 16 17 N -0.60 -14.94 3.03 -161.13 -0.49 -15.43 16 18 C -0.22 -5.97 10.01 -15.06 -0.15 -6.12 16 19 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 20 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 21 N -0.92 -26.96 10.07 55.49 0.56 -26.40 16 22 Si 0.91 22.09 29.55 -169.99 -5.02 17.06 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 C 0.15 3.82 5.91 -2.58 -0.02 3.80 16 27 C -0.14 -2.98 5.76 -24.74 -0.14 -3.12 16 28 C 0.17 2.24 10.76 -17.02 -0.18 2.05 16 29 N -0.51 -6.32 9.22 -11.96 -0.11 -6.43 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.08 0.20 8.07 -51.93 -0.42 -0.22 16 32 H 0.08 0.29 5.98 -51.93 -0.31 -0.02 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.28 8.07 -51.93 -0.42 -0.14 16 35 H 0.08 0.64 7.30 -51.93 -0.38 0.26 16 36 H 0.17 1.34 6.02 -52.49 -0.32 1.02 16 37 H 0.41 6.96 7.86 -40.82 -0.32 6.64 16 38 H 0.07 1.22 7.38 -51.92 -0.38 0.84 16 39 H 0.06 0.98 7.45 -51.93 -0.39 0.59 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.07 1.53 8.09 -51.93 -0.42 1.11 16 44 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 45 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 46 H 0.11 3.02 5.82 -51.93 -0.30 2.72 16 47 H 0.07 1.41 6.82 -51.93 -0.35 1.05 16 48 H 0.07 1.43 7.63 -51.93 -0.40 1.04 16 49 H 0.18 2.19 7.63 -52.49 -0.40 1.79 16 LS Contribution 385.70 15.07 5.81 5.81 Total: -1.00 -32.59 385.70 -9.56 -42.15 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -7.31 Total: 7.03 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: -2.10 Total: 9.15 kcal Atomic # 7 Polarization: -70.16 SS G_CDS: -1.01 Total: -71.17 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.08 Total: -10.03 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.59 -9.56 -42.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990683897.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.979 kcal (2) G-P(sol) polarization free energy of solvation -32.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds