Wall clock time and date at job start Wed Apr 1 2020 03:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 120.00301 * 2 1 4 4 C 1.38403 * 119.99429 * 180.02562 * 2 1 3 5 5 C 1.39883 * 119.99985 * 5.00110 * 4 2 1 6 6 N 1.31458 * 120.01215 * 179.97438 * 5 4 2 7 7 C 1.33274 * 120.00972 * 0.02562 * 6 5 4 8 8 C 1.47827 * 120.00133 * 179.97438 * 7 6 5 9 9 O 1.21564 * 120.00098 * 180.02562 * 8 7 6 10 10 N 1.34770 * 120.00040 * 0.02562 * 8 7 6 11 11 C 1.46501 * 120.00049 * 180.02562 * 10 8 7 12 12 C 1.53791 * 112.56469 * 300.61698 * 11 10 8 13 13 C 1.54219 * 106.57691 * 238.41593 * 12 11 10 14 14 C 1.54750 * 104.27582 * 335.23040 * 13 12 11 15 15 C 1.54774 * 103.21497 * 37.73659 * 14 13 12 16 16 H 1.09008 * 111.86637 * 85.85865 * 15 14 13 17 17 N 1.46985 * 108.68288 * 209.79813 * 15 14 13 18 18 C 1.36930 * 125.58202 * 294.12441 * 17 15 14 19 19 H 1.07997 * 120.00061 * 359.97438 * 18 17 15 20 20 C 1.38819 * 119.99980 * 179.97438 * 18 17 15 21 21 N 1.31623 * 119.99669 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99859 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47267 * 60.00013 * 22 20 18 24 24 H 1.48505 * 109.46623 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47090 * 299.99630 * 22 20 18 26 26 C 1.47370 * 108.83443 * 114.12161 * 17 15 14 27 27 C 1.54862 * 104.82892 * 335.31436 * 26 17 15 28 28 C 1.39407 * 119.99758 * 0.27533 * 7 6 5 29 29 N 1.32051 * 119.98081 * 359.41020 * 28 7 6 30 30 H 1.09000 * 109.46873 * 270.00442 * 1 2 3 31 31 H 1.08999 * 109.46964 * 29.99697 * 1 2 3 32 32 H 1.08995 * 109.47638 * 149.99622 * 1 2 3 33 33 H 1.08999 * 109.47334 * 270.00249 * 3 2 1 34 34 H 1.09006 * 109.46807 * 30.00242 * 3 2 1 35 35 H 1.08998 * 109.47148 * 149.99858 * 3 2 1 36 36 H 1.08000 * 119.99344 * 359.97438 * 5 4 2 37 37 H 0.97002 * 120.00319 * 0.02562 * 10 8 7 38 38 H 1.09008 * 109.98415 * 119.19004 * 12 11 10 39 39 H 1.08999 * 110.14899 * 357.73619 * 12 11 10 40 40 H 1.09002 * 110.49653 * 216.49159 * 13 12 11 41 41 H 1.09002 * 110.49371 * 93.96509 * 13 12 11 42 42 H 1.09005 * 110.67275 * 156.17501 * 14 13 12 43 43 H 1.09006 * 110.66835 * 279.30723 * 14 13 12 44 44 H 0.96999 * 119.99127 * 179.97438 * 21 20 18 45 45 H 1.09001 * 110.37041 * 94.15446 * 26 17 15 46 46 H 1.08999 * 110.36816 * 216.47354 * 26 17 15 47 47 H 1.08998 * 110.96983 * 155.18350 * 27 26 17 48 48 H 1.08993 * 110.96817 * 278.95578 * 27 26 17 49 49 H 1.07999 * 120.00556 * 179.70539 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1569 -1.1987 -0.0005 5 6 1.4614 -2.4077 -0.1067 6 7 2.1184 -3.5463 -0.1077 7 6 3.4473 -3.5492 -0.0071 8 6 4.1858 -4.8298 -0.0078 9 8 5.3980 -4.8324 0.0845 10 7 3.5153 -5.9943 -0.1106 11 6 4.2472 -7.2634 -0.1106 12 6 5.2594 -7.3609 -1.2644 13 6 4.8699 -8.6056 -2.0874 14 6 4.1109 -9.5052 -1.0827 15 6 3.3053 -8.4896 -0.2370 16 1 2.3511 -8.2408 -0.7017 17 7 3.1277 -9.0386 1.1149 18 6 2.3964 -10.1518 1.4330 19 1 1.8893 -10.7049 0.6563 20 6 2.3069 -10.5693 2.7539 21 7 2.9254 -9.8954 3.7004 22 14 1.3087 -12.0874 3.1879 23 1 1.8651 -13.2659 2.4761 24 1 1.3724 -12.3193 4.6534 25 1 -0.1044 -11.8841 2.7794 26 6 3.8655 -8.1950 2.0717 27 6 4.9780 -7.5217 1.2307 28 6 4.1404 -2.3448 0.1050 29 7 3.4808 -1.2009 0.0998 30 1 -0.3633 0.0001 1.0277 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3634 -0.8899 -0.5139 33 1 2.3792 1.5834 -1.0276 34 1 1.6085 2.0283 0.5139 35 1 3.1500 1.1383 0.5138 36 1 0.3844 -2.4056 -0.1878 37 1 2.5482 -5.9923 -0.1845 38 1 6.2676 -7.4771 -0.8666 39 1 5.2045 -6.4688 -1.8883 40 1 5.7611 -9.1133 -2.4565 41 1 4.2198 -8.3267 -2.9166 42 1 3.4408 -10.1869 -1.6066 43 1 4.8109 -10.0580 -0.4561 44 1 2.8625 -10.1870 4.6234 45 1 3.2053 -7.4411 2.5005 46 1 4.3038 -8.8085 2.8589 47 1 5.2988 -6.5851 1.6867 48 1 5.8232 -8.1956 1.0910 49 1 5.2169 -2.3473 0.1913 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000990683897.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:07 Heat of formation + Delta-G solvation = 41.374625 kcal Electronic energy + Delta-G solvation = -30886.829875 eV Core-core repulsion = 26849.381463 eV Total energy + Delta-G solvation = -4037.448412 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.32737 -41.37503 -39.46902 -37.92093 -36.03217 -35.38607 -34.53445 -33.30157 -32.13737 -31.24797 -29.36800 -28.40542 -27.94414 -26.86573 -25.71302 -25.22286 -23.90071 -22.61399 -21.64048 -21.22309 -20.20429 -19.16367 -18.91593 -18.64340 -18.26653 -17.05504 -16.83389 -16.76193 -16.36793 -16.10372 -15.78979 -15.67684 -15.42059 -15.15973 -14.89163 -14.67483 -14.49441 -14.32574 -13.86702 -13.48766 -13.43823 -13.30929 -13.16680 -12.93280 -12.90999 -12.78977 -12.62279 -12.52053 -12.42088 -12.27879 -12.06070 -11.89357 -11.68124 -11.59614 -11.48077 -11.23092 -11.16099 -11.08040 -10.69665 -10.16731 -9.95151 -8.84922 -8.79429 -7.71399 -5.16527 -0.43858 0.07609 1.48460 1.51696 1.57747 1.69501 1.75169 2.12902 2.52800 2.80328 3.06273 3.22909 3.35741 3.37043 3.41620 3.66713 3.89942 3.96898 3.97985 4.02330 4.22950 4.36156 4.38612 4.43542 4.48585 4.49363 4.55841 4.61033 4.68913 4.75556 4.83081 4.89952 4.91402 4.93144 4.98197 5.08988 5.11360 5.19663 5.24936 5.34175 5.49047 5.53968 5.64586 5.66435 5.69603 5.84821 5.94956 6.29078 6.32655 6.54004 6.78078 7.13668 7.20622 7.82105 8.46912 9.29897 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.013546 B = 0.002809 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.526576 B = 9966.990376 C =11106.025463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.591 5.591 3 C 0.087 3.913 4 C 0.369 3.631 5 C -0.001 4.001 6 N -0.391 5.391 7 C -0.073 4.073 8 C 0.582 3.418 9 O -0.561 6.561 10 N -0.687 5.687 11 C 0.169 3.831 12 C -0.103 4.103 13 C -0.110 4.110 14 C -0.123 4.123 15 C 0.152 3.848 16 H 0.053 0.947 17 N -0.611 5.611 18 C -0.225 4.225 19 H 0.085 0.915 20 C -0.071 4.071 21 N -0.952 5.952 22 Si 0.979 3.021 23 H -0.276 1.276 24 H -0.299 1.299 25 H -0.278 1.278 26 C 0.164 3.836 27 C -0.129 4.129 28 C 0.172 3.828 29 N -0.523 5.523 30 H 0.070 0.930 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.096 0.904 35 H 0.066 0.934 36 H 0.203 0.797 37 H 0.410 0.590 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.052 0.948 44 H 0.244 0.756 45 H -0.023 1.023 46 H 0.074 0.926 47 H 0.060 0.940 48 H 0.070 0.930 49 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.230 21.697 -12.301 25.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.301 5.301 3 C -0.055 4.055 4 C 0.126 3.874 5 C -0.176 4.176 6 N -0.106 5.106 7 C -0.212 4.212 8 C 0.368 3.632 9 O -0.440 6.440 10 N -0.336 5.336 11 C 0.082 3.918 12 C -0.142 4.142 13 C -0.148 4.148 14 C -0.163 4.163 15 C 0.045 3.955 16 H 0.071 0.929 17 N -0.335 5.335 18 C -0.353 4.353 19 H 0.103 0.897 20 C -0.263 4.263 21 N -0.603 5.603 22 Si 0.808 3.192 23 H -0.202 1.202 24 H -0.225 1.225 25 H -0.205 1.205 26 C 0.038 3.962 27 C -0.168 4.168 28 C 0.011 3.989 29 N -0.246 5.246 30 H 0.088 0.912 31 H 0.122 0.878 32 H 0.104 0.896 33 H 0.079 0.921 34 H 0.115 0.885 35 H 0.084 0.916 36 H 0.219 0.781 37 H 0.246 0.754 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.085 0.915 43 H 0.070 0.930 44 H 0.054 0.946 45 H -0.005 1.005 46 H 0.091 0.909 47 H 0.079 0.921 48 H 0.089 0.911 49 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -3.512 21.721 -12.052 25.088 hybrid contribution -0.879 -0.764 0.950 1.502 sum -4.390 20.957 -11.103 24.120 Atomic orbital electron populations 1.22208 0.75274 1.05456 1.03519 1.46627 1.07170 1.02457 1.73885 1.21857 0.97729 0.83428 1.02496 1.19924 0.89667 0.88853 0.88952 1.23740 1.02677 0.85875 1.05262 1.68086 1.07565 1.30226 1.04726 1.21430 0.91130 0.94980 1.13654 1.17738 0.86433 0.83093 0.75920 1.90740 1.13805 1.87490 1.51929 1.45680 1.11089 1.04398 1.72416 1.21582 0.92292 0.82160 0.95734 1.22229 0.97790 0.98815 0.95360 1.22303 1.00577 0.94649 0.97229 1.22794 0.98736 0.97628 0.97126 1.22060 0.95420 0.91365 0.86626 0.92929 1.44713 1.58030 1.28663 1.02072 1.19381 1.22129 1.01175 0.92657 0.89689 1.25619 1.02510 1.02367 0.95787 1.70068 1.48537 1.41901 0.99749 0.85136 0.78509 0.79395 0.76200 1.20208 1.22514 1.20454 1.21615 0.90339 0.91392 0.92828 1.23140 0.97966 0.99593 0.96121 1.23502 1.01859 0.85816 0.87716 1.68165 1.07132 1.28895 1.20451 0.91165 0.87833 0.89587 0.92060 0.88506 0.91550 0.78071 0.75425 0.91386 0.91630 0.90030 0.90265 0.91494 0.92951 0.94630 1.00518 0.90857 0.92122 0.91096 0.79844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.39 10.28 127.77 1.31 1.70 16 2 N -0.59 -7.57 3.37 -753.49 -2.54 -10.12 16 3 C 0.09 0.86 10.50 127.77 1.34 2.20 16 4 C 0.37 7.43 7.37 133.34 0.98 8.41 16 5 C 0.00 -0.02 10.42 85.15 0.89 0.87 16 6 N -0.39 -10.75 9.69 -183.79 -1.78 -12.53 16 7 C -0.07 -2.21 6.74 41.75 0.28 -1.93 16 8 C 0.58 20.38 6.97 86.78 0.61 20.98 16 9 O -0.56 -21.56 14.21 -3.92 -0.06 -21.62 16 10 N -0.69 -24.45 5.24 -418.32 -2.19 -26.64 16 11 C 0.17 6.39 0.74 5.26 0.00 6.39 16 12 C -0.10 -3.33 5.24 31.27 0.16 -3.17 16 13 C -0.11 -3.09 6.83 31.60 0.22 -2.88 16 14 C -0.12 -4.39 6.21 31.80 0.20 -4.20 16 15 C 0.15 6.25 3.64 46.24 0.17 6.41 16 16 H 0.05 2.12 8.02 -2.38 -0.02 2.10 16 17 N -0.61 -31.44 3.03 -663.69 -2.01 -33.45 16 18 C -0.22 -12.44 10.01 84.04 0.84 -11.60 16 19 H 0.09 4.45 7.83 -2.91 -0.02 4.43 16 20 C -0.07 -4.05 5.49 84.86 0.47 -3.59 16 21 N -0.95 -58.13 10.07 21.65 0.22 -57.92 16 22 Si 0.98 46.09 29.55 68.60 2.03 48.12 16 23 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 24 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 25 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 26 C 0.16 8.63 5.91 86.85 0.51 9.14 16 27 C -0.13 -5.63 5.76 31.88 0.18 -5.44 16 28 C 0.17 4.63 10.76 84.94 0.91 5.55 16 29 N -0.52 -12.64 9.22 -191.74 -1.77 -14.41 16 30 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.10 0.07 8.07 -2.39 -0.02 0.05 16 32 H 0.09 0.31 5.98 -2.39 -0.01 0.30 16 33 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.10 0.44 8.07 -2.38 -0.02 0.42 16 35 H 0.07 0.92 7.30 -2.39 -0.02 0.91 16 36 H 0.20 2.58 6.02 -2.91 -0.02 2.56 16 37 H 0.41 14.18 7.86 -92.71 -0.73 13.45 16 38 H 0.07 2.25 7.38 -2.38 -0.02 2.24 16 39 H 0.06 2.07 7.45 -2.39 -0.02 2.05 16 40 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 43 H 0.05 2.11 8.09 -2.38 -0.02 2.09 16 44 H 0.24 14.59 8.31 -92.71 -0.77 13.82 16 45 H -0.02 -1.34 8.14 -2.39 -0.02 -1.36 16 46 H 0.07 4.39 5.82 -2.39 -0.01 4.38 16 47 H 0.06 2.70 6.82 -2.39 -0.02 2.68 16 48 H 0.07 3.04 7.63 -2.39 -0.02 3.02 16 49 H 0.18 4.61 7.63 -2.91 -0.02 4.59 16 Total: -1.00 -73.53 385.70 1.23 -72.30 By element: Atomic # 1 Polarization: 27.14 SS G_CDS: 0.25 Total: 27.39 kcal Atomic # 6 Polarization: 19.78 SS G_CDS: 9.08 Total: 28.86 kcal Atomic # 7 Polarization: -144.98 SS G_CDS: -10.07 Total: -155.05 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.06 Total: -21.62 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -73.53 1.23 -72.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990683897.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.673 kcal (2) G-P(sol) polarization free energy of solvation -73.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds