Wall clock time and date at job start Wed Apr 1 2020 03:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 120.00072 * 2 1 4 4 C 1.38408 * 119.99888 * 180.02562 * 2 1 3 5 5 C 1.39889 * 120.00006 * 4.99732 * 4 2 1 6 6 N 1.31449 * 120.01540 * 180.02562 * 5 4 2 7 7 C 1.33279 * 120.00909 * 359.97438 * 6 5 4 8 8 C 1.47818 * 120.00477 * 180.02562 * 7 6 5 9 9 O 1.21556 * 120.00516 * 180.02562 * 8 7 6 10 10 N 1.34778 * 119.99691 * 0.02562 * 8 7 6 11 11 C 1.46504 * 119.99794 * 180.02562 * 10 8 7 12 12 C 1.55231 * 113.17234 * 60.04458 * 11 10 8 13 13 C 1.54218 * 106.82385 * 120.09715 * 12 11 10 14 14 C 1.54762 * 104.15206 * 25.64505 * 13 12 11 15 15 C 1.54765 * 103.21721 * 322.18844 * 14 13 12 16 16 H 1.08995 * 111.86899 * 274.14526 * 15 14 13 17 17 N 1.46978 * 108.69315 * 150.19645 * 15 14 13 18 18 C 1.36936 * 125.57953 * 64.89573 * 17 15 14 19 19 H 1.08002 * 120.00137 * 344.21032 * 18 17 15 20 20 C 1.38813 * 120.00032 * 164.20278 * 18 17 15 21 21 N 1.31625 * 119.99689 * 156.91469 * 20 18 17 22 22 Si 1.86799 * 120.00090 * 336.91117 * 20 18 17 23 23 H 1.48499 * 109.46825 * 90.00147 * 22 20 18 24 24 H 1.48503 * 109.47170 * 209.99787 * 22 20 18 25 25 H 1.48492 * 109.47270 * 330.00196 * 22 20 18 26 26 C 1.47365 * 108.84270 * 245.16706 * 17 15 14 27 27 C 1.54610 * 104.95049 * 24.32570 * 26 17 15 28 28 C 1.39407 * 119.99513 * 0.28429 * 7 6 5 29 29 N 1.32056 * 119.98619 * 359.45331 * 28 7 6 30 30 H 1.08998 * 109.46766 * 270.00036 * 1 2 3 31 31 H 1.08995 * 109.47271 * 30.00117 * 1 2 3 32 32 H 1.09002 * 109.46833 * 150.00149 * 1 2 3 33 33 H 1.08995 * 109.47472 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47008 * 300.00019 * 3 2 1 35 35 H 1.08993 * 109.47102 * 59.99680 * 3 2 1 36 36 H 1.08003 * 119.99229 * 359.97438 * 5 4 2 37 37 H 0.97003 * 120.00269 * 0.02562 * 10 8 7 38 38 H 1.08998 * 109.36491 * 1.06410 * 12 11 10 39 39 H 1.09009 * 110.56116 * 239.79397 * 12 11 10 40 40 H 1.08994 * 110.49367 * 266.97898 * 13 12 11 41 41 H 1.09004 * 110.61013 * 144.36296 * 13 12 11 42 42 H 1.09007 * 110.66793 * 203.75559 * 14 13 12 43 43 H 1.09001 * 110.66767 * 80.62497 * 14 13 12 44 44 H 0.96999 * 120.00266 * 5.13449 * 21 20 18 45 45 H 1.08999 * 110.37530 * 143.27247 * 26 17 15 46 46 H 1.09002 * 110.36805 * 265.59760 * 26 17 15 47 47 H 1.08999 * 111.08075 * 205.02776 * 27 26 17 48 48 H 1.09000 * 110.77838 * 81.35521 * 27 26 17 49 49 H 1.08000 * 120.00971 * 179.71864 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1570 -1.1987 -0.0005 5 6 1.4615 -2.4078 -0.1066 6 7 2.1184 -3.5464 -0.1066 7 6 3.4474 -3.5492 -0.0061 8 6 4.1860 -4.8296 -0.0067 9 8 5.3981 -4.8322 0.0854 10 7 3.5156 -5.9943 -0.1095 11 6 4.2475 -7.2633 -0.1095 12 6 5.0734 -7.4922 1.1848 13 6 4.5412 -8.7876 1.8306 14 6 3.9509 -9.5870 0.6442 15 6 3.3056 -8.4896 -0.2358 16 1 2.2901 -8.2572 0.0846 17 7 3.3493 -8.9248 -1.6390 18 6 2.6858 -10.0035 -2.1597 19 1 2.2793 -10.7569 -1.5011 20 6 2.5354 -10.1288 -3.5339 21 7 2.3278 -11.3138 -4.0679 22 14 2.6277 -8.6157 -4.6254 23 1 4.0339 -8.3962 -5.0493 24 1 1.7751 -8.8175 -5.8244 25 1 2.1476 -7.4306 -3.8703 26 6 4.2293 -8.0140 -2.3926 27 6 5.1841 -7.4154 -1.3341 28 6 4.1405 -2.3447 0.1050 29 7 3.4808 -1.2008 0.0998 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8899 -0.5138 32 1 -0.3633 -0.8900 -0.5138 33 1 3.2691 1.0696 -0.0005 34 1 1.9342 1.8403 -0.8900 35 1 1.9342 1.8403 0.8899 36 1 0.3846 -2.4058 -0.1877 37 1 2.5483 -5.9922 -0.1834 38 1 4.9260 -6.6503 1.8612 39 1 6.1322 -7.6003 0.9493 40 1 3.7648 -8.5589 2.5606 41 1 5.3528 -9.3440 2.2995 42 1 3.1972 -10.2931 0.9931 43 1 4.7400 -10.1038 0.0980 44 1 2.2055 -12.0884 -3.4970 45 1 4.7935 -8.5667 -3.1438 46 1 3.6442 -7.2233 -2.8621 47 1 5.5673 -6.4467 -1.6549 48 1 6.0012 -8.1035 -1.1171 49 1 5.2171 -2.3470 0.1911 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000990683904.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:14 Heat of formation + Delta-G solvation = 37.683739 kcal Electronic energy + Delta-G solvation = -31043.257782 eV Core-core repulsion = 27005.649321 eV Total energy + Delta-G solvation = -4037.608461 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.34510 -41.45249 -39.56828 -37.93402 -36.16873 -35.40718 -34.60819 -33.87594 -32.19456 -31.33973 -29.38444 -28.72049 -28.02585 -26.98141 -25.23779 -25.15191 -23.99966 -22.87289 -21.98116 -21.16833 -20.30413 -19.50990 -19.13120 -18.72425 -18.33010 -17.30015 -16.85735 -16.72745 -16.39930 -16.26656 -15.79547 -15.75634 -15.55550 -15.43416 -15.00538 -14.88391 -14.70124 -14.47473 -14.23369 -13.57640 -13.43733 -13.38274 -13.33152 -13.12940 -12.98373 -12.89434 -12.60996 -12.47557 -12.44281 -12.36242 -11.97463 -11.86615 -11.69590 -11.55676 -11.43713 -11.19261 -11.17384 -11.14481 -10.62923 -10.17893 -10.02598 -9.11952 -8.80360 -8.55893 -5.42342 -0.44682 0.06813 1.39394 1.49319 1.66221 1.68379 1.72553 2.06664 2.51126 2.78904 3.00109 3.09809 3.22668 3.23674 3.34796 3.42806 3.74603 3.85447 3.87093 4.00984 4.20921 4.21247 4.25431 4.34534 4.38993 4.45191 4.49882 4.54630 4.56094 4.71163 4.74013 4.76653 4.81059 4.87232 4.90135 4.92116 5.02294 5.04089 5.10448 5.16011 5.23252 5.28073 5.49615 5.60244 5.64523 5.68967 5.94090 6.15218 6.27350 6.49851 6.76248 6.85241 7.15976 7.50702 8.16982 8.90380 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.012784 B = 0.003157 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.779930 B = 8867.409671 C =10094.775646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.591 5.591 3 C 0.081 3.919 4 C 0.370 3.630 5 C -0.002 4.002 6 N -0.391 5.391 7 C -0.075 4.075 8 C 0.585 3.415 9 O -0.556 6.556 10 N -0.689 5.689 11 C 0.167 3.833 12 C -0.101 4.101 13 C -0.110 4.110 14 C -0.122 4.122 15 C 0.151 3.849 16 H 0.051 0.949 17 N -0.616 5.616 18 C -0.300 4.300 19 H 0.050 0.950 20 C -0.074 4.074 21 N -0.960 5.960 22 Si 1.101 2.899 23 H -0.281 1.281 24 H -0.305 1.305 25 H -0.273 1.273 26 C 0.103 3.897 27 C -0.118 4.118 28 C 0.175 3.825 29 N -0.524 5.524 30 H 0.073 0.927 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.201 0.799 37 H 0.411 0.589 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.249 0.751 45 H 0.042 0.958 46 H 0.025 0.975 47 H 0.079 0.921 48 H 0.085 0.915 49 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.112 27.125 13.293 30.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.301 5.301 3 C -0.061 4.061 4 C 0.128 3.872 5 C -0.177 4.177 6 N -0.106 5.106 7 C -0.214 4.214 8 C 0.371 3.629 9 O -0.434 6.434 10 N -0.339 5.339 11 C 0.080 3.920 12 C -0.140 4.140 13 C -0.148 4.148 14 C -0.162 4.162 15 C 0.045 3.955 16 H 0.069 0.931 17 N -0.341 5.341 18 C -0.428 4.428 19 H 0.068 0.932 20 C -0.268 4.268 21 N -0.604 5.604 22 Si 0.929 3.071 23 H -0.208 1.208 24 H -0.234 1.234 25 H -0.198 1.198 26 C -0.022 4.022 27 C -0.157 4.157 28 C 0.013 3.987 29 N -0.248 5.248 30 H 0.091 0.909 31 H 0.119 0.881 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.218 0.782 37 H 0.248 0.752 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.042 0.958 47 H 0.098 0.902 48 H 0.103 0.897 49 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -1.399 27.718 11.769 30.146 hybrid contribution -0.681 -1.191 1.125 1.774 sum -2.079 26.527 12.894 29.568 Atomic orbital electron populations 1.22184 0.75363 1.05300 1.03616 1.46624 1.07176 1.02520 1.73799 1.21915 0.98075 0.83290 1.02800 1.19913 0.89693 0.88804 0.88809 1.23706 1.02661 0.85889 1.05405 1.68085 1.07698 1.30250 1.04563 1.21429 0.91105 0.95027 1.13810 1.17693 0.86412 0.82912 0.75842 1.90747 1.13534 1.87395 1.51731 1.45670 1.11180 1.04312 1.72735 1.21777 0.91996 0.82122 0.96118 1.22467 0.99188 0.98032 0.94280 1.22296 1.00846 0.94984 0.96624 1.22718 0.99535 0.97470 0.96439 1.22067 0.96266 0.91995 0.85187 0.93081 1.44849 1.52735 1.31108 1.05452 1.19887 1.32776 0.97917 0.92264 0.93246 1.26883 0.99608 1.03750 0.96544 1.71006 1.53559 0.98680 1.37188 0.83323 0.76667 0.73106 0.73955 1.20807 1.23364 1.19848 1.22011 0.92084 0.92483 0.95621 1.22946 0.96990 1.01051 0.94705 1.23531 1.01886 0.85722 0.87524 1.68147 1.07043 1.28984 1.20581 0.90868 0.88130 0.89715 0.90539 0.90512 0.90571 0.78214 0.75227 0.91479 0.90513 0.90536 0.89842 0.92666 0.92765 0.94117 0.94023 0.95794 0.90209 0.89666 0.79627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.32 10.33 127.77 1.32 1.64 16 2 N -0.59 -6.83 3.37 -753.50 -2.54 -9.37 16 3 C 0.08 0.72 10.71 127.77 1.37 2.09 16 4 C 0.37 6.78 7.37 133.34 0.98 7.76 16 5 C 0.00 -0.03 10.42 85.15 0.89 0.85 16 6 N -0.39 -9.78 9.69 -183.80 -1.78 -11.57 16 7 C -0.07 -2.03 6.74 41.74 0.28 -1.74 16 8 C 0.59 18.17 7.02 86.78 0.61 18.78 16 9 O -0.56 -18.85 14.27 -3.89 -0.06 -18.90 16 10 N -0.69 -21.98 5.26 -416.09 -2.19 -24.18 16 11 C 0.17 5.68 0.78 5.76 0.00 5.68 16 12 C -0.10 -2.93 5.34 31.77 0.17 -2.76 16 13 C -0.11 -2.94 6.84 31.61 0.22 -2.73 16 14 C -0.12 -4.32 6.22 31.80 0.20 -4.12 16 15 C 0.15 5.96 3.61 46.24 0.17 6.13 16 16 H 0.05 2.03 7.97 -2.39 -0.02 2.01 16 17 N -0.62 -29.97 2.88 -664.23 -1.91 -31.88 16 18 C -0.30 -17.29 10.15 84.03 0.85 -16.44 16 19 H 0.05 3.05 8.06 -2.91 -0.02 3.03 16 20 C -0.07 -4.44 5.42 84.86 0.46 -3.98 16 21 N -0.96 -62.25 13.70 21.65 0.30 -61.95 16 22 Si 1.10 56.03 24.69 68.60 1.69 57.73 16 23 H -0.28 -13.57 6.69 99.48 0.67 -12.91 16 24 H -0.31 -15.65 7.11 99.48 0.71 -14.94 16 25 H -0.27 -13.03 6.25 99.48 0.62 -12.41 16 26 C 0.10 4.62 4.69 86.76 0.41 5.03 16 27 C -0.12 -4.38 5.80 31.80 0.18 -4.19 16 28 C 0.17 4.19 10.76 84.94 0.91 5.10 16 29 N -0.52 -11.46 8.99 -191.73 -1.72 -13.19 16 30 H 0.07 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.10 0.04 8.07 -2.39 -0.02 0.02 16 32 H 0.08 0.26 5.98 -2.39 -0.01 0.25 16 33 H 0.08 0.99 6.82 -2.39 -0.02 0.97 16 34 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.20 2.28 6.02 -2.91 -0.02 2.26 16 37 H 0.41 12.88 7.82 -92.71 -0.73 12.16 16 38 H 0.07 1.90 7.47 -2.39 -0.02 1.89 16 39 H 0.08 2.20 7.41 -2.38 -0.02 2.18 16 40 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 43 H 0.05 2.14 8.09 -2.39 -0.02 2.12 16 44 H 0.25 16.18 8.73 -92.71 -0.81 15.37 16 45 H 0.04 2.01 6.47 -2.39 -0.02 2.00 16 46 H 0.02 1.12 5.49 -2.39 -0.01 1.11 16 47 H 0.08 2.91 6.84 -2.39 -0.02 2.89 16 48 H 0.08 3.03 7.60 -2.39 -0.02 3.02 16 49 H 0.19 4.06 7.63 -2.91 -0.02 4.04 16 Total: -1.00 -75.37 380.42 0.90 -74.47 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: 0.09 Total: 21.74 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: 9.02 Total: 17.09 kcal Atomic # 7 Polarization: -142.28 SS G_CDS: -9.85 Total: -152.13 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.06 Total: -18.90 kcal Atomic # 14 Polarization: 56.03 SS G_CDS: 1.69 Total: 57.73 kcal Total: -75.37 0.90 -74.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990683904.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.155 kcal (2) G-P(sol) polarization free energy of solvation -75.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds