Wall clock time and date at job start Wed Apr 1 2020 03:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 119.99483 * 2 1 4 4 C 1.38507 * 120.00139 * 180.02562 * 2 1 3 5 5 C 1.39593 * 120.04733 * 352.25798 * 4 2 1 6 6 C 1.38289 * 118.02732 * 179.70513 * 5 4 2 7 7 C 1.40067 * 117.99183 * 0.53081 * 6 5 4 8 8 C 1.47858 * 120.09768 * 179.73500 * 7 6 5 9 9 O 1.21560 * 119.99981 * 359.72191 * 8 7 6 10 10 N 1.34777 * 120.00351 * 179.72764 * 8 7 6 11 11 C 1.46495 * 120.00049 * 179.97438 * 10 8 7 12 12 C 1.53586 * 112.67292 * 300.65810 * 11 10 8 13 13 C 1.54224 * 106.67477 * 238.56102 * 12 11 10 14 14 C 1.57299 * 104.37095 * 334.98813 * 13 12 11 15 15 C 1.54767 * 102.04119 * 37.72605 * 14 13 12 16 16 H 1.09001 * 111.86744 * 85.41990 * 15 14 13 17 17 N 1.46977 * 108.69115 * 209.36301 * 15 14 13 18 18 C 1.36944 * 125.58216 * 295.11400 * 17 15 14 19 19 H 1.08000 * 119.99340 * 359.97438 * 18 17 15 20 20 C 1.38804 * 120.00358 * 179.97438 * 18 17 15 21 21 N 1.31623 * 119.99888 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00127 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47293 * 89.99844 * 22 20 18 24 24 H 1.48498 * 109.47073 * 209.99875 * 22 20 18 25 25 H 1.48500 * 109.46868 * 329.99928 * 22 20 18 26 26 C 1.47373 * 108.84100 * 115.08761 * 17 15 14 27 27 C 1.54859 * 104.81873 * 335.31066 * 26 17 15 28 28 N 1.32761 * 119.80962 * 359.46027 * 7 6 5 29 29 N 1.28357 * 122.09634 * 0.27602 * 28 7 6 30 30 H 1.09001 * 109.46800 * 174.58454 * 1 2 3 31 31 H 1.09001 * 109.47117 * 294.58698 * 1 2 3 32 32 H 1.08996 * 109.47098 * 54.58898 * 1 2 3 33 33 H 1.09001 * 109.47630 * 269.99913 * 3 2 1 34 34 H 1.08998 * 109.47181 * 30.00556 * 3 2 1 35 35 H 1.09003 * 109.46493 * 149.99897 * 3 2 1 36 36 H 1.08006 * 120.98922 * 359.97438 * 5 4 2 37 37 H 1.08004 * 121.00334 * 180.29055 * 6 5 4 38 38 H 0.96998 * 119.99596 * 359.97438 * 10 8 7 39 39 H 1.09000 * 110.01662 * 357.86137 * 12 11 10 40 40 H 1.09004 * 110.01771 * 119.20975 * 12 11 10 41 41 H 1.08999 * 110.49587 * 93.72632 * 13 12 11 42 42 H 1.09003 * 110.48866 * 216.25009 * 13 12 11 43 43 H 1.09005 * 110.80170 * 279.88099 * 14 13 12 44 44 H 1.08999 * 111.64724 * 155.95829 * 14 13 12 45 45 H 0.97002 * 120.00102 * 179.97438 * 21 20 18 46 46 H 1.08997 * 110.36647 * 94.15077 * 26 17 15 47 47 H 1.08998 * 110.36755 * 216.36112 * 26 17 15 48 48 H 1.09007 * 110.96759 * 155.19609 * 27 26 17 49 49 H 1.09004 * 110.97164 * 278.94877 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1576 -1.1995 -0.0005 5 6 1.4702 -2.4036 0.1617 6 6 2.2023 -3.5767 0.1484 7 6 3.5903 -3.4836 -0.0158 8 6 4.4189 -4.7081 -0.0311 9 8 3.8963 -5.7973 0.1040 10 7 5.7535 -4.6167 -0.1946 11 6 6.5745 -5.8299 -0.2092 12 6 6.4562 -6.6404 1.0900 13 6 7.8791 -6.7491 1.6748 14 6 8.8264 -6.5896 0.4293 15 6 8.0820 -5.5218 -0.4079 16 1 8.3354 -4.5096 -0.0927 17 7 8.3841 -5.7428 -1.8292 18 6 9.6176 -5.6175 -2.4105 19 1 10.4703 -5.3334 -1.8117 20 6 9.7720 -5.8555 -3.7693 21 7 8.7329 -6.2022 -4.4989 22 14 11.4546 -5.6838 -4.5623 23 1 12.1637 -6.9873 -4.5063 24 1 11.2941 -5.2681 -5.9789 25 1 12.2437 -4.6593 -3.8322 26 6 7.1423 -6.1221 -2.5263 27 6 6.2395 -6.7300 -1.4247 28 7 4.1590 -2.2931 -0.1631 29 7 3.4770 -1.2057 -0.1558 30 1 -0.3633 -1.0231 -0.0970 31 1 -0.3633 0.4276 0.9345 32 1 -0.3633 0.5954 -0.8375 33 1 2.3791 1.5836 -1.0276 34 1 1.6084 2.0284 0.5139 35 1 3.1499 1.1384 0.5139 36 1 0.3979 -2.4188 0.2894 37 1 1.7190 -4.5354 0.2650 38 1 6.1705 -3.7476 -0.3027 39 1 5.8022 -6.1248 1.7932 40 1 6.0633 -7.6343 0.8753 41 1 8.0581 -5.9501 2.3942 42 1 8.0259 -7.7226 2.1428 43 1 8.9020 -7.5269 -0.1222 44 1 9.8144 -6.2316 0.7188 45 1 8.8407 -6.3681 -5.4486 46 1 6.6685 -5.2429 -2.9628 47 1 7.3517 -6.8621 -3.2987 48 1 5.1863 -6.6465 -1.6933 49 1 6.5091 -7.7676 -1.2278 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992414900.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:54 Heat of formation + Delta-G solvation = 52.862638 kcal Electronic energy + Delta-G solvation = -30885.819032 eV Core-core repulsion = 26848.868778 eV Total energy + Delta-G solvation = -4036.950254 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.26354 -41.36784 -39.47748 -38.05081 -36.01381 -34.78697 -34.16042 -33.34377 -32.62089 -31.32505 -29.39345 -28.42811 -27.90518 -26.74547 -25.73621 -25.53388 -23.71024 -22.69066 -21.71941 -21.35204 -20.20741 -19.27895 -18.89188 -18.48974 -18.21032 -17.10191 -16.86051 -16.80309 -16.13671 -16.13580 -15.70856 -15.62067 -15.33901 -15.18025 -14.81739 -14.75576 -14.48820 -14.33592 -13.87709 -13.49776 -13.40317 -13.23189 -13.17980 -12.96155 -12.90210 -12.78411 -12.65188 -12.61205 -12.27528 -12.01961 -11.92229 -11.75820 -11.67116 -11.58357 -11.47995 -11.29677 -11.25622 -10.94951 -10.71525 -10.70693 -9.99224 -8.93605 -8.84948 -7.72164 -5.17221 -0.38692 -0.16784 1.47898 1.49823 1.58153 1.67295 1.70800 2.05788 2.51933 2.67545 3.00237 3.35359 3.39100 3.46884 3.60805 3.65708 3.69634 3.95775 3.96925 3.98351 4.19041 4.36701 4.40656 4.42603 4.48145 4.50642 4.59918 4.61170 4.67496 4.72037 4.74249 4.79111 4.88932 4.89861 4.95305 4.97219 5.02889 5.10832 5.18858 5.24486 5.34008 5.48428 5.53282 5.66108 5.66625 5.83993 5.92156 5.99589 6.32424 6.48427 7.09947 7.13372 7.63232 7.81549 8.46029 9.29282 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.013111 B = 0.002845 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.143419 B = 9840.323302 C =10994.360396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.598 5.598 3 C 0.091 3.909 4 C 0.342 3.658 5 C -0.173 4.173 6 C -0.029 4.029 7 C -0.049 4.049 8 C 0.582 3.418 9 O -0.553 6.553 10 N -0.688 5.688 11 C 0.169 3.831 12 C -0.102 4.102 13 C -0.110 4.110 14 C -0.121 4.121 15 C 0.149 3.851 16 H 0.048 0.952 17 N -0.611 5.611 18 C -0.223 4.223 19 H 0.085 0.915 20 C -0.071 4.071 21 N -0.952 5.952 22 Si 0.979 3.021 23 H -0.285 1.285 24 H -0.299 1.299 25 H -0.270 1.270 26 C 0.162 3.838 27 C -0.128 4.128 28 N -0.189 5.189 29 N -0.333 5.333 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.053 0.947 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.197 0.803 37 H 0.176 0.824 38 H 0.409 0.591 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.054 0.946 44 H 0.068 0.932 45 H 0.244 0.756 46 H -0.024 1.024 47 H 0.075 0.925 48 H 0.062 0.938 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.397 11.071 14.739 26.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.309 5.309 3 C -0.052 4.052 4 C 0.101 3.899 5 C -0.205 4.205 6 C -0.057 4.057 7 C -0.202 4.202 8 C 0.367 3.633 9 O -0.431 6.431 10 N -0.337 5.337 11 C 0.082 3.918 12 C -0.141 4.141 13 C -0.148 4.148 14 C -0.161 4.161 15 C 0.043 3.957 16 H 0.066 0.934 17 N -0.336 5.336 18 C -0.352 4.352 19 H 0.103 0.897 20 C -0.263 4.263 21 N -0.602 5.602 22 Si 0.807 3.193 23 H -0.212 1.212 24 H -0.226 1.226 25 H -0.194 1.194 26 C 0.037 3.963 27 C -0.167 4.167 28 N -0.035 5.035 29 N -0.188 5.188 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.072 0.928 34 H 0.119 0.881 35 H 0.080 0.920 36 H 0.214 0.786 37 H 0.193 0.807 38 H 0.245 0.755 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.101 0.899 43 H 0.073 0.927 44 H 0.086 0.914 45 H 0.054 0.946 46 H -0.006 1.006 47 H 0.093 0.907 48 H 0.080 0.920 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.418 11.374 14.412 26.006 hybrid contribution -0.046 -0.175 -1.103 1.117 sum -18.464 11.199 13.309 25.366 Atomic orbital electron populations 1.22209 0.75322 1.04980 1.03884 1.46491 1.07035 1.02233 1.75191 1.21782 0.97413 0.83746 1.02228 1.20493 0.90994 0.88882 0.89550 1.22224 1.03810 0.89499 1.05007 1.22351 0.91610 1.01483 0.90233 1.22415 0.94894 0.93593 1.09261 1.17668 0.81937 0.87402 0.76311 1.90740 1.72923 1.27902 1.51531 1.45782 1.06381 1.10198 1.71349 1.21588 0.89586 0.84686 0.95935 1.22162 0.97973 0.99635 0.94313 1.22725 0.92578 1.02858 0.96591 1.23209 0.98337 0.98637 0.95936 1.22085 0.91337 0.97094 0.85217 0.93397 1.44735 1.04810 1.80291 1.03723 1.19413 0.85932 1.37994 0.91878 0.89743 1.25611 1.00894 1.02819 0.96988 1.70065 1.29444 1.55063 1.05666 0.85063 0.79316 0.77789 0.77090 1.21238 1.22585 1.19441 1.21636 0.84574 0.96185 0.93923 1.23137 0.99039 0.98613 0.95933 1.72930 1.31104 0.94965 1.04514 1.73063 1.05571 1.19197 1.20938 0.88923 0.89765 0.90080 0.92849 0.88100 0.91996 0.78606 0.80695 0.75528 0.91485 0.91060 0.90345 0.89851 0.92747 0.91372 0.94629 1.00649 0.90721 0.91951 0.90921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.37 10.57 127.77 1.35 1.72 16 2 N -0.60 -8.33 3.38 -753.59 -2.54 -10.88 16 3 C 0.09 1.13 10.45 127.77 1.33 2.47 16 4 C 0.34 7.16 7.42 133.21 0.99 8.15 16 5 C -0.17 -2.86 9.33 22.61 0.21 -2.65 16 6 C -0.03 -0.64 9.71 22.73 0.22 -0.42 16 7 C -0.05 -1.49 6.83 42.00 0.29 -1.21 16 8 C 0.58 20.18 6.95 86.79 0.60 20.78 16 9 O -0.55 -20.52 14.26 -3.90 -0.06 -20.57 16 10 N -0.69 -24.94 5.21 -418.60 -2.18 -27.12 16 11 C 0.17 6.38 0.73 5.19 0.00 6.38 16 12 C -0.10 -3.25 5.27 31.21 0.16 -3.08 16 13 C -0.11 -3.07 6.90 32.52 0.22 -2.84 16 14 C -0.12 -4.36 6.40 32.71 0.21 -4.15 16 15 C 0.15 6.23 3.58 46.24 0.17 6.39 16 16 H 0.05 2.00 7.99 -2.39 -0.02 1.98 16 17 N -0.61 -31.84 3.04 -663.73 -2.02 -33.86 16 18 C -0.22 -12.53 9.99 84.03 0.84 -11.69 16 19 H 0.08 4.50 7.83 -2.91 -0.02 4.48 16 20 C -0.07 -4.12 5.49 84.86 0.47 -3.65 16 21 N -0.95 -58.56 10.07 21.65 0.22 -58.34 16 22 Si 0.98 46.72 29.55 68.60 2.03 48.75 16 23 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 24 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 25 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 26 C 0.16 8.60 5.91 86.85 0.51 9.11 16 27 C -0.13 -5.54 5.77 31.88 0.18 -5.36 16 28 N -0.19 -6.08 10.73 -48.50 -0.52 -6.60 16 29 N -0.33 -9.57 10.38 -55.18 -0.57 -10.14 16 30 H 0.09 0.22 5.44 -2.39 -0.01 0.21 16 31 H 0.08 0.13 8.14 -2.39 -0.02 0.11 16 32 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.10 0.60 8.07 -2.39 -0.02 0.58 16 35 H 0.06 1.03 7.51 -2.39 -0.02 1.01 16 36 H 0.20 1.36 5.96 -2.91 -0.02 1.34 16 37 H 0.18 3.26 7.71 -2.91 -0.02 3.24 16 38 H 0.41 14.88 7.85 -92.71 -0.73 14.15 16 39 H 0.07 2.07 7.43 -2.39 -0.02 2.05 16 40 H 0.07 2.29 7.43 -2.39 -0.02 2.27 16 41 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.05 2.18 8.10 -2.38 -0.02 2.16 16 44 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 45 H 0.24 14.66 8.31 -92.71 -0.77 13.89 16 46 H -0.02 -1.43 8.14 -2.39 -0.02 -1.45 16 47 H 0.07 4.48 5.82 -2.39 -0.01 4.47 16 48 H 0.06 2.73 6.78 -2.38 -0.02 2.71 16 49 H 0.07 3.07 7.68 -2.39 -0.02 3.05 16 Total: -1.00 -75.70 386.12 2.37 -73.34 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: 0.25 Total: 25.47 kcal Atomic # 6 Polarization: 12.20 SS G_CDS: 7.76 Total: 19.96 kcal Atomic # 7 Polarization: -139.33 SS G_CDS: -7.62 Total: -146.95 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.06 Total: -20.57 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -75.70 2.37 -73.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992414900.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.201 kcal (2) G-P(sol) polarization free energy of solvation -75.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds