Wall clock time and date at job start Wed Apr 1 2020 03:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34773 * 119.99812 * 2 1 4 4 O 1.21280 * 119.99881 * 180.02562 * 3 2 1 5 5 C 1.50705 * 120.00222 * 359.97438 * 3 2 1 6 6 H 1.09003 * 109.90121 * 318.90162 * 5 3 2 7 7 C 1.53988 * 109.91636 * 80.00398 * 5 3 2 8 8 C 1.54588 * 105.14260 * 120.57905 * 7 5 3 9 9 C 1.54938 * 102.92082 * 21.95395 * 8 7 5 10 10 N 1.47900 * 109.91588 * 197.59447 * 5 3 2 11 11 C 1.38403 * 110.99934 * 94.80353 * 10 5 3 12 12 N 1.32496 * 119.22155 * 359.73029 * 11 10 5 13 13 C 1.32271 * 120.74477 * 179.71951 * 12 11 10 14 14 C 1.38605 * 119.19621 * 0.53664 * 13 12 11 15 15 C 1.38609 * 118.55703 * 359.74091 * 14 13 12 16 16 N 1.32278 * 119.19697 * 359.97438 * 15 14 13 17 17 C 1.46499 * 120.00089 * 179.97438 * 2 1 3 18 18 C 1.53793 * 113.61105 * 60.00342 * 17 2 1 19 19 C 1.53781 * 87.07845 * 220.01822 * 18 17 2 20 20 N 1.46500 * 113.61339 * 270.80169 * 19 18 17 21 21 C 1.36936 * 119.99618 * 203.47656 * 20 19 18 22 22 H 1.07990 * 120.00427 * 359.97438 * 21 20 19 23 23 C 1.38824 * 119.99622 * 179.97438 * 21 20 19 24 24 N 1.31617 * 120.00063 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99662 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47100 * 90.00073 * 25 23 21 27 27 H 1.48504 * 109.47148 * 209.99685 * 25 23 21 28 28 H 1.48493 * 109.47533 * 329.99863 * 25 23 21 29 29 C 1.53777 * 113.61486 * 322.50793 * 17 2 1 30 30 H 1.09006 * 109.47115 * 270.00234 * 1 2 3 31 31 H 1.08997 * 109.47122 * 30.00601 * 1 2 3 32 32 H 1.08996 * 109.46994 * 150.00764 * 1 2 3 33 33 H 1.09001 * 110.30864 * 239.49629 * 7 5 3 34 34 H 1.09007 * 110.31020 * 1.55851 * 7 5 3 35 35 H 1.08997 * 110.72986 * 140.31479 * 8 7 5 36 36 H 1.09006 * 110.72686 * 263.42079 * 8 7 5 37 37 H 1.09001 * 110.66372 * 81.01986 * 9 8 7 38 38 H 1.09001 * 110.67307 * 203.98193 * 9 8 7 39 39 H 1.07992 * 120.40387 * 180.25308 * 13 12 11 40 40 H 1.07995 * 120.72458 * 179.70418 * 14 13 12 41 41 H 1.08005 * 120.40173 * 179.97438 * 15 14 13 42 42 H 1.08994 * 112.90841 * 191.24993 * 17 2 1 43 43 H 1.09000 * 113.61258 * 105.46958 * 18 17 2 44 44 H 1.08997 * 113.61168 * 334.56779 * 18 17 2 45 45 H 1.09002 * 113.61228 * 139.98223 * 19 18 17 46 46 H 0.96998 * 120.00149 * 23.46564 * 20 19 18 47 47 H 0.96996 * 120.00147 * 180.02562 * 24 23 21 48 48 H 1.08999 * 113.61947 * 25.43156 * 29 17 2 49 49 H 1.08997 * 113.61348 * 254.52371 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1672 -0.0005 5 6 1.3853 2.4723 -0.0006 6 1 0.5312 2.4073 -0.6746 7 6 0.9049 2.8013 1.4250 8 6 1.5566 4.1607 1.7671 9 6 1.8667 4.7573 0.3713 10 7 2.2815 3.5713 -0.4208 11 6 2.1642 3.8155 -1.7781 12 7 1.3251 3.0840 -2.4967 13 6 1.1851 3.2952 -3.7949 14 6 1.9371 4.2879 -4.4034 15 6 2.8093 5.0306 -3.6231 16 7 2.8972 4.7719 -2.3289 17 6 2.1975 -1.2687 0.0006 18 6 1.8954 -2.1550 -1.2195 19 6 1.9129 -3.3526 -0.2550 20 7 3.2394 -3.9515 -0.0871 21 6 3.3560 -5.2536 0.3202 22 1 2.4704 -5.8390 0.5181 23 6 4.6129 -5.8213 0.4788 24 7 5.6924 -5.1080 0.2372 25 14 4.7721 -7.5974 1.0352 26 1 4.7930 -8.4882 -0.1528 27 1 6.0329 -7.7649 1.8017 28 1 3.6171 -7.9510 1.8988 29 6 1.5374 -2.3608 0.8586 30 1 -0.3634 0.0000 1.0277 31 1 -0.3633 0.8899 -0.5139 32 1 -0.3633 -0.8900 -0.5137 33 1 -0.1816 2.8862 1.4479 34 1 1.2385 2.0336 2.1233 35 1 0.8590 4.7966 2.3121 36 1 2.4727 4.0160 2.3399 37 1 0.9752 5.2142 -0.0584 38 1 2.6771 5.4835 0.4346 39 1 0.4966 2.6984 -4.3746 40 1 1.8459 4.4782 -5.4625 41 1 3.4099 5.8111 -4.0665 42 1 3.2624 -1.1437 0.1964 43 1 2.6998 -2.1746 -1.9547 44 1 0.9183 -1.9669 -1.6644 45 1 1.1382 -4.0910 -0.4617 46 1 4.0349 -3.4257 -0.2646 47 1 6.5706 -5.5048 0.3476 48 1 0.4624 -2.2292 0.9818 49 1 2.0527 -2.5467 1.8009 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998930391.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:54 Heat of formation + Delta-G solvation = 91.486556 kcal Electronic energy + Delta-G solvation = -30842.166092 eV Core-core repulsion = 26806.890696 eV Total energy + Delta-G solvation = -4035.275396 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.66273 -40.19946 -38.85482 -37.35282 -34.73409 -34.01001 -33.40168 -32.89297 -30.16240 -30.06521 -29.33284 -26.95601 -25.09941 -24.85137 -24.79095 -24.09239 -23.08257 -21.70013 -21.50254 -19.42099 -18.34606 -18.15959 -17.61499 -17.36597 -16.91222 -16.21187 -16.10126 -15.33852 -15.23692 -15.07671 -14.87376 -14.76854 -13.98786 -13.81426 -13.72681 -13.42649 -13.38380 -13.01294 -12.95425 -12.75205 -12.64524 -12.19454 -12.01559 -11.87096 -11.68411 -11.56961 -11.43415 -11.30654 -11.13003 -10.94845 -10.84491 -10.71406 -10.50980 -10.18570 -10.13159 -9.72557 -9.63271 -9.46316 -9.36779 -8.87559 -8.61190 -8.27396 -6.97254 -5.75541 -3.05836 0.67184 0.85492 2.67581 2.88616 3.34125 3.44747 3.46751 3.49369 3.51800 3.78142 4.17922 4.34017 4.34563 4.47980 4.58796 4.63662 4.73196 4.80649 4.86590 4.93684 5.08692 5.17019 5.22358 5.24836 5.31388 5.39455 5.45373 5.46289 5.48217 5.51983 5.59510 5.66409 5.71486 5.83691 5.90085 5.91178 6.03041 6.14111 6.15565 6.30503 6.45691 6.48354 6.66365 6.76416 6.86784 6.95632 7.10825 7.66772 7.72230 7.87206 8.42351 8.48012 9.52915 10.10242 10.44272 11.46569 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.015752 B = 0.002500 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.119698 B =11197.956293 C =11772.371237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.601 5.601 3 C 0.523 3.477 4 O -0.519 6.519 5 C 0.051 3.949 6 H 0.114 0.886 7 C -0.121 4.121 8 C -0.123 4.123 9 C 0.058 3.942 10 N -0.422 5.422 11 C 0.493 3.507 12 N -0.554 5.554 13 C 0.175 3.825 14 C -0.263 4.263 15 C 0.173 3.827 16 N -0.524 5.524 17 C 0.128 3.872 18 C -0.167 4.167 19 C 0.172 3.828 20 N -0.706 5.706 21 C -0.245 4.245 22 H 0.072 0.928 23 C -0.012 4.012 24 N -0.929 5.929 25 Si 0.909 3.091 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.281 1.281 29 C -0.181 4.181 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.054 0.946 38 H 0.101 0.899 39 H 0.169 0.831 40 H 0.147 0.853 41 H 0.170 0.830 42 H 0.116 0.884 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.066 0.934 46 H 0.386 0.614 47 H 0.256 0.744 48 H 0.071 0.929 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.571 24.419 -4.929 29.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.335 5.335 3 C 0.309 3.691 4 O -0.393 6.393 5 C -0.060 4.060 6 H 0.131 0.869 7 C -0.160 4.160 8 C -0.161 4.161 9 C -0.068 4.068 10 N -0.142 5.142 11 C 0.137 3.863 12 N -0.274 5.274 13 C 0.008 3.992 14 C -0.286 4.286 15 C 0.005 3.995 16 N -0.241 5.241 17 C 0.025 3.975 18 C -0.207 4.207 19 C 0.059 3.941 20 N -0.345 5.345 21 C -0.376 4.376 22 H 0.090 0.910 23 C -0.208 4.208 24 N -0.577 5.577 25 Si 0.740 3.260 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.207 1.207 29 C -0.223 4.223 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.072 0.928 38 H 0.120 0.880 39 H 0.186 0.814 40 H 0.165 0.835 41 H 0.187 0.813 42 H 0.134 0.866 43 H 0.087 0.913 44 H 0.095 0.905 45 H 0.084 0.916 46 H 0.221 0.779 47 H 0.066 0.934 48 H 0.090 0.910 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.237 23.899 -3.717 28.586 hybrid contribution -0.300 -0.555 -1.055 1.229 sum -15.537 23.344 -4.771 28.445 Atomic orbital electron populations 1.21760 0.80373 1.03007 1.01499 1.47872 1.06512 1.05915 1.73165 1.20094 0.87958 0.84497 0.76520 1.90724 1.13656 1.86817 1.48132 1.22517 0.95147 0.89851 0.98512 0.86900 1.22400 1.00867 0.98628 0.94081 1.22555 1.01989 0.95541 0.95996 1.23237 1.00324 0.90964 0.92247 1.60733 1.48310 1.06257 0.98851 1.21122 0.86324 0.86840 0.92027 1.68242 1.20397 1.29875 1.08873 1.23071 0.94149 0.92353 0.89639 1.22745 1.02276 1.00589 1.03000 1.23140 0.92728 0.95485 0.88132 1.68033 1.23055 1.19447 1.13600 1.22697 0.97695 0.79570 0.97505 1.23931 1.01332 0.97750 0.97702 1.20903 0.89835 0.91242 0.92086 1.42220 1.01047 1.11544 1.79656 1.19260 0.92334 0.88048 1.37930 0.90956 1.24796 0.95422 0.98352 1.02262 1.69674 0.97113 1.35955 1.54944 0.86168 0.77030 0.84693 0.78139 1.21681 1.21752 1.20708 1.24289 0.99323 0.97747 1.00940 0.92734 0.91415 0.90629 0.89910 0.89791 0.89735 0.89632 0.92786 0.88042 0.81434 0.83503 0.81257 0.86632 0.91327 0.90513 0.91568 0.77931 0.93368 0.91010 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.80 8.64 59.85 0.52 1.32 16 2 N -0.60 -9.05 3.08 -173.00 -0.53 -9.59 16 3 C 0.52 8.74 6.71 -10.98 -0.07 8.67 16 4 O -0.52 -11.32 16.04 5.56 0.09 -11.23 16 5 C 0.05 0.64 1.72 -67.80 -0.12 0.52 16 6 H 0.11 1.30 4.73 -51.93 -0.25 1.06 16 7 C -0.12 -1.12 6.29 -25.38 -0.16 -1.28 16 8 C -0.12 -1.01 7.06 -24.87 -0.18 -1.18 16 9 C 0.06 0.57 6.31 -1.90 -0.01 0.55 16 10 N -0.42 -5.81 4.56 -165.25 -0.75 -6.56 16 11 C 0.49 6.76 6.98 -322.81 -2.25 4.51 16 12 N -0.55 -6.90 8.15 -13.93 -0.11 -7.01 16 13 C 0.17 1.60 11.30 -17.23 -0.19 1.40 16 14 C -0.26 -1.99 10.16 -39.31 -0.40 -2.39 16 15 C 0.17 1.57 11.30 -17.22 -0.19 1.37 16 16 N -0.52 -6.71 10.21 -13.93 -0.14 -6.86 16 17 C 0.13 2.31 4.09 -67.11 -0.27 2.03 16 18 C -0.17 -2.95 7.36 -25.91 -0.19 -3.14 16 19 C 0.17 3.48 4.55 -67.12 -0.31 3.17 16 20 N -0.71 -18.22 5.31 -52.63 -0.28 -18.50 16 21 C -0.24 -6.88 9.97 -15.06 -0.15 -7.03 16 22 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 23 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 24 N -0.93 -28.82 13.06 55.49 0.72 -28.09 16 25 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 28 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 29 C -0.18 -3.18 7.31 -25.92 -0.19 -3.37 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.59 5.98 -51.93 -0.31 0.28 16 32 H 0.08 0.75 6.34 -51.93 -0.33 0.42 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.87 7.68 -51.92 -0.40 0.47 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.46 7.99 -51.93 -0.42 0.05 16 38 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 41 H 0.17 0.92 8.06 -52.48 -0.42 0.50 16 42 H 0.12 2.55 7.24 -51.93 -0.38 2.17 16 43 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.08 1.14 6.92 -51.93 -0.36 0.78 16 45 H 0.07 1.30 8.11 -51.93 -0.42 0.87 16 46 H 0.39 10.80 7.90 -40.82 -0.32 10.48 16 47 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 48 H 0.07 1.04 6.72 -51.93 -0.35 0.69 16 49 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 393.45 15.07 5.93 5.93 Total: -1.00 -37.51 393.45 -11.67 -49.18 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -7.30 Total: 10.38 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: -4.27 Total: 4.71 kcal Atomic # 7 Polarization: -75.50 SS G_CDS: -1.10 Total: -76.60 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.09 Total: -11.23 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -37.51 -11.67 -49.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998930391.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.669 kcal (2) G-P(sol) polarization free energy of solvation -37.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds