Wall clock time and date at job start Wed Apr 1 2020 03:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34777 * 119.99808 * 2 1 4 4 O 1.21487 * 119.99805 * 182.32748 * 3 2 1 5 5 C 1.48466 * 120.00244 * 2.32452 * 3 2 1 6 6 C 1.39506 * 120.50575 * 172.93696 * 5 3 2 7 7 C 1.38771 * 118.42474 * 180.02562 * 6 5 3 8 8 N 1.32142 * 119.24557 * 0.02562 * 7 6 5 9 9 C 1.32559 * 120.95714 * 359.97438 * 8 7 6 10 10 N 1.38436 * 119.13960 * 180.02562 * 9 8 7 11 11 C 1.48531 * 111.00131 * 242.60448 * 10 9 8 12 12 C 1.54935 * 103.22754 * 159.71767 * 11 10 9 13 13 C 1.54592 * 102.92234 * 322.58449 * 12 11 10 14 14 C 1.47902 * 110.99756 * 0.02562 * 10 9 8 15 15 N 1.32293 * 121.72656 * 359.97438 * 9 8 7 16 16 C 1.46496 * 120.00275 * 179.97438 * 2 1 3 17 17 C 1.53783 * 113.61143 * 39.13792 * 16 2 1 18 18 C 1.53960 * 87.01790 * 220.04608 * 17 16 2 19 19 N 1.46501 * 113.73688 * 139.94393 * 18 17 16 20 20 C 1.36941 * 119.99834 * 107.40761 * 19 18 17 21 21 H 1.07995 * 120.00040 * 359.97438 * 20 19 18 22 22 C 1.38811 * 120.00081 * 179.97438 * 20 19 18 23 23 N 1.31621 * 120.00389 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99869 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.46944 * 90.00342 * 24 22 20 26 26 H 1.48493 * 109.47321 * 210.00222 * 24 22 20 27 27 H 1.48497 * 109.47207 * 330.00281 * 24 22 20 28 28 C 1.53781 * 87.11198 * 25.36546 * 18 17 16 29 29 H 1.08992 * 109.46901 * 83.84253 * 1 2 3 30 30 H 1.09007 * 109.46796 * 203.84459 * 1 2 3 31 31 H 1.08998 * 109.47117 * 323.84157 * 1 2 3 32 32 H 1.08001 * 120.79082 * 359.97438 * 6 5 3 33 33 H 1.08000 * 120.37964 * 180.27552 * 7 6 5 34 34 H 1.08997 * 110.66797 * 278.15209 * 11 10 9 35 35 H 1.09001 * 110.66974 * 41.28265 * 11 10 9 36 36 H 1.08998 * 110.72610 * 204.22745 * 12 11 10 37 37 H 1.08997 * 110.87987 * 81.01534 * 12 11 10 38 38 H 1.08994 * 110.31425 * 263.03980 * 13 12 11 39 39 H 1.09006 * 110.31214 * 140.87444 * 13 12 11 40 40 H 1.09005 * 109.91790 * 333.50749 * 14 10 9 41 41 H 1.08998 * 109.92155 * 94.79756 * 14 10 9 42 42 H 1.08999 * 112.85331 * 170.33210 * 16 2 1 43 43 H 1.08992 * 113.61468 * 334.56497 * 17 16 2 44 44 H 1.08998 * 113.61191 * 105.47282 * 17 16 2 45 45 H 1.09003 * 113.53935 * 270.81064 * 18 17 16 46 46 H 0.96997 * 120.00120 * 287.39671 * 19 18 17 47 47 H 0.97000 * 120.00276 * 180.02562 * 23 22 20 48 48 H 1.09002 * 113.61009 * 220.09216 * 28 18 17 49 49 H 1.08993 * 113.61426 * 89.18424 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3530 1.1677 -0.0427 5 6 1.3974 2.4525 0.0521 6 6 2.0816 3.6592 0.2005 7 6 1.3455 4.8347 0.2446 8 7 0.0291 4.7762 0.1460 9 6 -0.5932 3.6142 0.0058 10 7 -1.9739 3.5967 -0.0945 11 6 -2.5806 2.8534 1.0392 12 6 -4.0405 3.3715 1.0621 13 6 -3.8822 4.8673 0.7049 14 6 -2.5279 4.9662 -0.0221 15 7 0.0705 2.4709 -0.0419 16 6 2.1975 -1.2687 0.0006 17 6 1.5591 -2.3490 -0.8884 18 6 1.9075 -3.3556 0.2233 19 7 0.8614 -4.3522 0.4655 20 6 1.0452 -5.6488 0.0653 21 1 1.9611 -5.9367 -0.4293 22 6 0.0542 -6.5933 0.2953 23 7 0.2306 -7.8395 -0.0898 24 14 -1.5297 -6.0956 1.1514 25 1 -2.5249 -5.6620 0.1380 26 1 -2.0676 -7.2536 1.9095 27 1 -1.2558 -4.9755 2.0871 28 6 1.8674 -2.1701 1.2020 29 1 -0.3633 0.1102 -1.0217 30 1 -0.3633 -0.9400 0.4155 31 1 -0.3633 0.8297 0.6063 32 1 3.1585 3.6780 0.2800 33 1 1.8432 5.7870 0.3541 34 1 -2.5563 1.7799 0.8524 35 1 -2.0723 3.0940 1.9730 36 1 -4.4753 3.2560 2.0549 37 1 -4.6465 2.8587 0.3152 38 1 -3.8708 5.4735 1.6107 39 1 -4.6894 5.1863 0.0455 40 1 -1.8516 5.6112 0.5390 41 1 -2.6735 5.3615 -1.0273 42 1 3.2667 -1.1402 -0.1682 43 1 0.4875 -2.2155 -1.0362 44 1 2.0977 -2.5222 -1.8200 45 1 2.8974 -3.7988 0.1145 46 1 0.0387 -4.0936 0.9095 47 1 -0.4620 -8.4994 0.0706 48 1 2.6547 -2.1992 1.9554 49 1 0.8803 -1.9876 1.6265 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999006737.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:43 Heat of formation + Delta-G solvation = 80.197356 kcal Electronic energy + Delta-G solvation = -30386.278434 eV Core-core repulsion = 26350.513502 eV Total energy + Delta-G solvation = -4035.764932 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.67157 -41.29221 -39.83473 -39.17482 -36.49066 -35.40664 -34.42695 -34.10385 -32.52535 -30.88616 -30.02173 -28.11808 -27.42741 -26.60009 -25.85243 -25.08436 -23.89786 -22.51247 -21.98692 -21.14358 -20.48427 -19.36909 -19.14938 -18.80636 -17.74731 -17.41383 -17.11120 -16.80352 -16.63655 -16.46777 -16.06243 -15.84008 -15.55443 -15.19537 -14.88051 -14.70897 -14.56172 -14.24202 -14.02596 -13.74334 -13.61375 -13.58314 -13.32302 -13.31697 -13.17598 -12.85323 -12.42650 -12.31825 -12.20723 -12.13564 -11.98617 -11.94643 -11.82059 -11.72132 -11.63484 -11.44881 -11.39473 -11.17290 -10.92414 -10.21269 -9.77680 -9.48530 -9.29405 -8.01792 -5.35907 -0.65975 -0.16225 1.38534 1.42795 1.49818 1.50793 1.67174 2.08036 2.49418 2.55441 2.83740 3.22915 3.27708 3.44762 3.57704 3.64745 3.72127 3.75904 3.79512 3.86233 4.02677 4.07264 4.13427 4.19182 4.27494 4.31897 4.45891 4.50285 4.69560 4.69782 4.74320 4.81280 4.82635 4.85283 4.91499 4.94058 4.98896 5.05291 5.09829 5.13528 5.17553 5.23234 5.36192 5.46612 5.52620 5.56929 5.77726 6.00150 6.19668 6.23643 6.76055 6.92177 7.07531 7.82949 8.02978 9.19649 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.012038 B = 0.002771 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.463782 B =10103.860737 C =12158.575889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.573 5.573 3 C 0.562 3.438 4 O -0.557 6.557 5 C 0.139 3.861 6 C -0.196 4.196 7 C 0.186 3.814 8 N -0.544 5.544 9 C 0.469 3.531 10 N -0.458 5.458 11 C 0.049 3.951 12 C -0.120 4.120 13 C -0.127 4.127 14 C 0.038 3.962 15 N -0.505 5.505 16 C 0.125 3.875 17 C -0.164 4.164 18 C 0.159 3.841 19 N -0.736 5.736 20 C -0.234 4.234 21 H 0.057 0.943 22 C -0.066 4.066 23 N -0.985 5.985 24 Si 0.956 3.044 25 H -0.277 1.277 26 H -0.298 1.298 27 H -0.249 1.249 28 C -0.147 4.147 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.111 0.889 32 H 0.172 0.828 33 H 0.221 0.779 34 H 0.093 0.907 35 H 0.051 0.949 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.116 0.884 43 H 0.084 0.916 44 H 0.064 0.936 45 H 0.080 0.920 46 H 0.368 0.632 47 H 0.258 0.742 48 H 0.079 0.921 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.014 34.353 4.372 35.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.302 5.302 3 C 0.348 3.652 4 O -0.435 6.435 5 C -0.009 4.009 6 C -0.221 4.221 7 C 0.018 3.982 8 N -0.263 5.263 9 C 0.113 3.887 10 N -0.179 5.179 11 C -0.077 4.077 12 C -0.158 4.158 13 C -0.165 4.165 14 C -0.089 4.089 15 N -0.226 5.226 16 C 0.022 3.978 17 C -0.205 4.205 18 C 0.049 3.951 19 N -0.377 5.377 20 C -0.365 4.365 21 H 0.075 0.925 22 C -0.257 4.257 23 N -0.635 5.635 24 Si 0.783 3.217 25 H -0.203 1.203 26 H -0.224 1.224 27 H -0.173 1.173 28 C -0.187 4.187 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.129 0.871 32 H 0.189 0.811 33 H 0.237 0.763 34 H 0.111 0.889 35 H 0.069 0.931 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.134 0.866 43 H 0.103 0.897 44 H 0.083 0.917 45 H 0.098 0.902 46 H 0.201 0.799 47 H 0.066 0.934 48 H 0.098 0.902 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.462 33.819 3.690 34.628 hybrid contribution 0.359 -0.353 0.596 0.780 sum -6.103 33.467 4.286 34.287 Atomic orbital electron populations 1.22402 0.76995 1.03810 1.03185 1.47823 1.08596 1.04808 1.68983 1.18171 0.86345 0.83451 0.77192 1.90760 1.13694 1.87083 1.51974 1.21403 0.89507 0.94653 0.95292 1.23017 1.04482 0.92347 1.02226 1.23895 0.87731 0.99807 0.86754 1.68329 1.12645 1.28643 1.16717 1.21552 0.92730 0.84423 0.90040 1.61379 0.98519 1.16379 1.41586 1.23340 0.95447 0.99522 0.89347 1.22545 0.94044 0.95585 1.03621 1.22463 0.96104 0.96811 1.01096 1.23029 0.96350 0.86882 1.02601 1.68442 1.07972 1.28949 1.17240 1.22473 0.97382 0.80363 0.97631 1.24150 1.01459 0.95793 0.99095 1.21601 0.92353 0.86817 0.94360 1.42636 1.18349 1.05909 1.70842 1.19095 1.01735 0.85525 1.30178 0.92461 1.25546 1.02328 0.95261 1.02555 1.69892 1.35995 1.03139 1.54475 0.85397 0.79842 0.77597 0.78890 1.20305 1.22444 1.17299 1.23794 1.02829 0.94840 0.97261 0.92607 0.91324 0.87110 0.81091 0.76278 0.88851 0.93089 0.88655 0.90050 0.89888 0.89381 0.90108 0.89918 0.86621 0.89712 0.91733 0.90212 0.79870 0.93359 0.90200 0.89327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.84 8.07 127.77 1.03 2.87 16 2 N -0.57 -15.44 3.08 -822.34 -2.54 -17.98 16 3 C 0.56 15.61 7.68 86.97 0.67 16.28 16 4 O -0.56 -17.94 15.91 -3.68 -0.06 -18.00 16 5 C 0.14 3.21 6.65 42.00 0.28 3.49 16 6 C -0.20 -3.34 9.71 22.70 0.22 -3.12 16 7 C 0.19 2.38 11.30 84.77 0.96 3.34 16 8 N -0.54 -9.42 8.12 -198.02 -1.61 -11.03 16 9 C 0.47 9.53 6.98 261.53 1.83 11.36 16 10 N -0.46 -8.12 5.35 -696.29 -3.73 -11.85 16 11 C 0.05 0.70 6.31 86.65 0.55 1.24 16 12 C -0.12 -1.13 7.06 31.80 0.22 -0.91 16 13 C -0.13 -1.07 6.93 31.48 0.22 -0.86 16 14 C 0.04 0.50 6.34 86.46 0.55 1.05 16 15 N -0.50 -11.33 6.00 -187.10 -1.12 -12.45 16 16 C 0.13 3.61 4.22 45.52 0.19 3.80 16 17 C -0.16 -5.27 7.31 31.18 0.23 -5.04 16 18 C 0.16 5.83 4.48 45.58 0.20 6.03 16 19 N -0.74 -33.40 5.21 -320.16 -1.67 -35.07 16 20 C -0.23 -13.21 10.45 84.03 0.88 -12.34 16 21 H 0.06 3.55 8.06 -2.91 -0.02 3.53 16 22 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 23 N -0.98 -63.11 13.97 21.65 0.30 -62.80 16 24 Si 0.96 44.64 27.73 68.60 1.90 46.55 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 26 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 27 H -0.25 -10.30 6.52 99.48 0.65 -9.65 16 28 C -0.15 -4.35 7.34 31.12 0.23 -4.12 16 29 H 0.06 1.36 8.14 -2.39 -0.02 1.35 16 30 H 0.07 1.60 6.10 -2.38 -0.01 1.59 16 31 H 0.11 2.46 5.26 -2.42 -0.01 2.45 16 32 H 0.17 2.49 7.75 -2.91 -0.02 2.47 16 33 H 0.22 0.75 8.06 -2.91 -0.02 0.73 16 34 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.05 0.75 7.99 -2.39 -0.02 0.73 16 36 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 40 H 0.08 1.14 6.46 -2.38 -0.02 1.12 16 41 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.12 3.46 7.20 -2.39 -0.02 3.44 16 43 H 0.08 2.74 6.67 -2.39 -0.02 2.72 16 44 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.08 3.05 8.10 -2.39 -0.02 3.03 16 46 H 0.37 15.79 5.79 -92.71 -0.54 15.26 16 47 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 48 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 49 H 0.09 2.51 6.88 -2.39 -0.02 2.49 16 Total: -1.00 -73.40 388.33 0.58 -72.82 By element: Atomic # 1 Polarization: 29.72 SS G_CDS: 0.38 Total: 30.10 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: 8.72 Total: 19.70 kcal Atomic # 7 Polarization: -140.81 SS G_CDS: -10.36 Total: -151.17 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.06 Total: -18.00 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.90 Total: 46.55 kcal Total: -73.40 0.58 -72.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999006737.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.020 kcal (2) G-P(sol) polarization free energy of solvation -73.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds