Wall clock time and date at job start Wed Apr 1 2020 03:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34774 * 120.00166 * 2 1 4 4 O 1.21273 * 120.00002 * 1.72903 * 3 2 1 5 5 C 1.50707 * 119.99759 * 181.73095 * 3 2 1 6 6 C 1.53116 * 109.52225 * 283.06687 * 5 3 2 7 7 C 1.53039 * 109.27541 * 182.50664 * 6 5 3 8 8 N 1.46847 * 109.57740 * 59.08348 * 7 6 5 9 9 C 1.46898 * 111.00140 * 174.19664 * 8 7 6 10 10 C 1.52998 * 109.46840 * 201.81889 * 9 8 7 11 11 F 1.39902 * 109.47644 * 301.31003 * 10 9 8 12 12 F 1.39907 * 109.47176 * 61.31447 * 10 9 8 13 13 C 1.46855 * 111.19550 * 298.29025 * 8 7 6 14 14 C 1.53042 * 109.52294 * 61.74240 * 13 8 7 15 15 C 1.46502 * 119.99700 * 179.97438 * 2 1 3 16 16 C 1.53778 * 113.61431 * 110.85704 * 15 2 1 17 17 C 1.53779 * 87.07925 * 270.88099 * 16 15 2 18 18 N 1.46499 * 113.61514 * 89.11850 * 17 16 15 19 19 C 1.36935 * 120.00320 * 159.62914 * 18 17 16 20 20 H 1.07994 * 120.00072 * 0.02562 * 19 18 17 21 21 C 1.38821 * 119.99935 * 179.97438 * 19 18 17 22 22 N 1.31622 * 119.99980 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99931 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46822 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47362 * 119.99976 * 23 21 19 26 26 H 1.48499 * 109.46876 * 240.00198 * 23 21 19 27 27 C 1.53774 * 87.08378 * 334.56643 * 17 16 15 28 28 H 1.09005 * 109.47018 * 265.19916 * 1 2 3 29 29 H 1.09001 * 109.46827 * 25.19344 * 1 2 3 30 30 H 1.08997 * 109.47210 * 145.19897 * 1 2 3 31 31 H 1.09000 * 109.51918 * 43.19330 * 5 3 2 32 32 H 1.08995 * 109.50120 * 302.38350 * 6 5 3 33 33 H 1.09004 * 109.50450 * 62.49908 * 6 5 3 34 34 H 1.09006 * 109.41205 * 299.06718 * 7 6 5 35 35 H 1.09000 * 109.45569 * 179.12875 * 7 6 5 36 36 H 1.09004 * 109.46935 * 321.81568 * 9 8 7 37 37 H 1.09000 * 109.47343 * 81.82140 * 9 8 7 38 38 H 1.09007 * 109.46943 * 181.30758 * 10 9 8 39 39 H 1.08996 * 109.46186 * 301.72619 * 13 8 7 40 40 H 1.09001 * 109.45289 * 181.74973 * 13 8 7 41 41 H 1.08997 * 109.50425 * 180.87524 * 14 13 8 42 42 H 1.09002 * 109.50313 * 60.75711 * 14 13 8 43 43 H 1.09002 * 112.90751 * 242.10850 * 15 2 1 44 44 H 1.08996 * 113.61594 * 25.43263 * 16 15 2 45 45 H 1.09003 * 113.61599 * 156.33692 * 16 15 2 46 46 H 1.09007 * 113.61411 * 220.01518 * 17 16 15 47 47 H 0.97008 * 119.99389 * 339.63658 * 18 17 16 48 48 H 0.97000 * 119.99389 * 180.02562 * 22 21 19 49 49 H 1.09002 * 113.61570 * 270.88121 * 27 17 16 50 50 H 1.09006 * 113.61262 * 139.97912 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5330 2.2172 0.0317 5 6 3.6455 1.1673 -0.0394 6 6 4.1937 0.8199 1.3474 7 6 5.7225 0.8829 1.3167 8 7 6.1516 2.2311 0.9232 9 6 7.6113 2.3671 1.0163 10 6 7.9787 3.8471 1.1401 11 9 7.4907 4.5434 0.0290 12 9 7.4111 4.3726 2.3059 13 6 5.6767 2.5671 -0.4252 14 6 4.1464 2.5560 -0.4460 15 6 2.1975 -1.2688 0.0006 16 6 2.9399 -1.5521 -1.3160 17 6 1.6514 -2.2349 -1.8042 18 7 0.7183 -1.3212 -2.4680 19 6 -0.2451 -1.8159 -3.3060 20 1 -0.3172 -2.8797 -3.4773 21 6 -1.1296 -0.9500 -3.9345 22 7 -1.0419 0.3465 -3.7253 23 14 -2.4442 -1.6250 -5.0772 24 1 -2.3308 -3.1043 -5.1429 25 1 -3.7863 -1.2533 -4.5619 26 1 -2.2598 -1.0541 -6.4356 27 6 1.3182 -2.4879 -0.3244 28 1 -0.3633 -0.0860 1.0241 29 1 -0.3633 0.9299 -0.4375 30 1 -0.3633 -0.8438 -0.5865 31 1 3.9910 0.4291 -0.7631 32 1 3.8155 1.5352 2.0778 33 1 3.8753 -0.1854 1.6232 34 1 6.1006 0.1569 0.5968 35 1 6.1153 0.6512 2.3066 36 1 7.9711 1.8288 1.8932 37 1 8.0728 1.9519 0.1203 38 1 9.0629 3.9497 1.1858 39 1 6.0549 1.8332 -1.1368 40 1 6.0364 3.5586 -0.7001 41 1 3.7944 2.7901 -1.4506 42 1 3.7675 3.2993 0.2554 43 1 2.8164 -1.4010 0.8880 44 1 3.1961 -0.6522 -1.8752 45 1 3.7812 -2.2361 -1.2044 46 1 1.8295 -3.1470 -2.3738 47 1 0.7830 -0.3656 -2.3138 48 1 -1.6602 0.9514 -4.1643 49 1 1.7161 -3.4277 0.0582 50 1 0.2651 -2.3434 -0.0831 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999299671.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:42 Heat of formation + Delta-G solvation = -83.125185 kcal Electronic energy + Delta-G solvation = -32610.225505 eV Core-core repulsion = 28116.689189 eV Total energy + Delta-G solvation = -4493.536315 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.10207 -47.10524 -40.55589 -38.89850 -37.70848 -34.07048 -33.84886 -32.85810 -30.94662 -30.01956 -29.63529 -27.14854 -25.10886 -24.70354 -23.99827 -23.23398 -22.86602 -22.22978 -20.30261 -19.27186 -18.07291 -17.81935 -17.49793 -17.49340 -16.64981 -16.35716 -15.92544 -15.37690 -15.28537 -15.03169 -14.87727 -14.37092 -14.18863 -13.99891 -13.94978 -13.45897 -13.42778 -13.15403 -13.13050 -12.97347 -12.65244 -12.46276 -12.40998 -12.21342 -11.94631 -11.71625 -11.66000 -11.34110 -11.24480 -10.98764 -10.95701 -10.90556 -10.73393 -10.53953 -10.36223 -10.24609 -10.10041 -9.76263 -9.62584 -9.16225 -8.90967 -8.63018 -8.03134 -7.02029 -5.81330 -3.12792 3.09827 3.36726 3.39950 3.45392 3.47842 3.48403 3.65703 3.98713 4.21192 4.52213 4.57799 4.59879 4.76164 4.85699 4.88777 5.01977 5.03537 5.07302 5.15145 5.22101 5.31041 5.35686 5.38098 5.47561 5.58446 5.61110 5.68826 5.75931 5.84285 5.91755 6.00454 6.03330 6.13936 6.21243 6.25549 6.32839 6.38639 6.46594 6.53643 6.61276 6.70727 6.81677 6.83804 6.94881 7.08339 7.67200 7.95404 8.35907 8.70504 9.47468 10.03593 10.38637 11.39359 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.019013 B = 0.002698 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.319299 B =10374.582784 C =10815.847165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.584 5.584 3 C 0.520 3.480 4 O -0.540 6.540 5 C -0.113 4.113 6 C -0.105 4.105 7 C 0.062 3.938 8 N -0.533 5.533 9 C 0.001 3.999 10 C 0.271 3.729 11 F -0.202 7.202 12 F -0.198 7.198 13 C 0.039 3.961 14 C -0.096 4.096 15 C 0.117 3.883 16 C -0.176 4.176 17 C 0.169 3.831 18 N -0.705 5.705 19 C -0.251 4.251 20 H 0.072 0.928 21 C -0.008 4.008 22 N -0.923 5.923 23 Si 0.906 3.094 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.292 1.292 27 C -0.185 4.185 28 H 0.033 0.967 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.038 0.962 35 H 0.078 0.922 36 H 0.102 0.898 37 H 0.067 0.933 38 H 0.110 0.890 39 H 0.035 0.965 40 H 0.098 0.902 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.086 0.914 46 H 0.062 0.938 47 H 0.391 0.609 48 H 0.257 0.743 49 H 0.080 0.920 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.397 -0.347 12.069 23.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.316 5.316 3 C 0.308 3.692 4 O -0.417 6.417 5 C -0.134 4.134 6 C -0.143 4.143 7 C -0.066 4.066 8 N -0.258 5.258 9 C -0.128 4.128 10 C 0.216 3.784 11 F -0.183 7.183 12 F -0.179 7.179 13 C -0.088 4.088 14 C -0.135 4.135 15 C 0.013 3.987 16 C -0.216 4.216 17 C 0.056 3.944 18 N -0.345 5.345 19 C -0.382 4.382 20 H 0.090 0.910 21 C -0.205 4.205 22 N -0.570 5.570 23 Si 0.737 3.263 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.219 1.219 27 C -0.227 4.227 28 H 0.052 0.948 29 H 0.098 0.902 30 H 0.124 0.876 31 H 0.115 0.885 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.056 0.944 35 H 0.096 0.904 36 H 0.120 0.880 37 H 0.085 0.915 38 H 0.127 0.873 39 H 0.053 0.947 40 H 0.116 0.884 41 H 0.092 0.908 42 H 0.100 0.900 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.105 0.895 46 H 0.080 0.920 47 H 0.227 0.773 48 H 0.067 0.933 49 H 0.098 0.902 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 19.661 0.492 12.264 23.178 hybrid contribution -0.436 -0.624 -1.142 1.372 sum 19.225 -0.131 11.121 22.211 Atomic orbital electron populations 1.21977 0.78307 1.06327 1.00095 1.47452 1.07248 1.04661 1.72281 1.20378 0.89554 0.83290 0.76019 1.90674 1.70283 1.30992 1.49786 1.21533 0.92519 1.00131 0.99198 1.21558 0.94177 1.02379 0.96220 1.22096 0.95976 0.88109 1.00408 1.61881 1.08705 1.27636 1.27576 1.23206 0.91058 0.94558 1.04023 1.21971 0.95719 0.89086 0.71597 1.92888 1.90069 1.81542 1.53838 1.93005 1.87726 1.88115 1.49045 1.22597 0.96330 1.02428 0.87423 1.21398 0.93163 0.95999 1.02903 1.21957 0.95027 0.84861 0.96899 1.23995 0.98781 1.01633 0.97144 1.21071 0.88896 0.93697 0.90707 1.42406 1.34511 1.05624 1.51974 1.19274 1.07222 0.92398 1.19278 0.91005 1.24785 0.99741 0.95329 1.00605 1.69692 1.39447 1.01136 1.46681 0.86144 0.81707 0.77872 0.80555 1.20576 1.21804 1.21884 1.24211 1.00680 0.95347 1.02413 0.94811 0.90222 0.87588 0.88476 0.90564 0.90608 0.94364 0.90408 0.87984 0.91476 0.87319 0.94681 0.88367 0.90763 0.90006 0.90779 0.91031 0.89542 0.92031 0.77337 0.93341 0.90151 0.90068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.49 8.51 59.85 0.51 2.00 16 2 N -0.58 -10.39 2.25 -173.00 -0.39 -10.78 16 3 C 0.52 9.62 6.71 -10.98 -0.07 9.54 16 4 O -0.54 -12.17 15.48 5.56 0.09 -12.08 16 5 C -0.11 -1.59 1.83 -91.65 -0.17 -1.76 16 6 C -0.11 -1.20 5.26 -26.65 -0.14 -1.34 16 7 C 0.06 0.56 5.41 -3.83 -0.02 0.54 16 8 N -0.53 -5.42 4.52 -234.66 -1.06 -6.48 16 9 C 0.00 0.01 5.40 -3.83 -0.02 -0.01 16 10 C 0.27 2.02 5.60 37.16 0.21 2.23 16 11 F -0.20 -2.06 14.43 2.25 0.03 -2.02 16 12 F -0.20 -2.10 17.28 2.25 0.04 -2.06 16 13 C 0.04 0.45 5.21 -3.83 -0.02 0.43 16 14 C -0.10 -1.39 4.85 -26.65 -0.13 -1.52 16 15 C 0.12 1.71 3.58 -67.12 -0.24 1.47 16 16 C -0.18 -2.61 6.40 -25.92 -0.17 -2.77 16 17 C 0.17 3.10 4.55 -67.12 -0.31 2.80 16 18 N -0.70 -16.74 3.51 -52.64 -0.18 -16.92 16 19 C -0.25 -6.66 9.98 -15.06 -0.15 -6.81 16 20 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 21 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 22 N -0.92 -27.37 13.06 55.49 0.72 -26.65 16 23 Si 0.91 21.96 29.55 -169.99 -5.02 16.93 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 27 C -0.19 -2.86 7.16 -25.92 -0.19 -3.04 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 1.85 7.31 -51.93 -0.38 1.47 16 30 H 0.11 2.28 4.36 -51.93 -0.23 2.06 16 31 H 0.10 1.32 4.96 -51.93 -0.26 1.06 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.08 0.78 5.79 -51.93 -0.30 0.48 16 34 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 0.59 7.92 -51.93 -0.41 0.18 16 36 H 0.10 0.51 7.76 -51.93 -0.40 0.11 16 37 H 0.07 0.38 7.97 -51.93 -0.41 -0.03 16 38 H 0.11 0.38 8.14 -51.92 -0.42 -0.04 16 39 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.10 1.15 5.28 -51.93 -0.27 0.88 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.08 1.33 7.85 -51.93 -0.41 0.92 16 43 H 0.07 0.90 6.00 -51.93 -0.31 0.59 16 44 H 0.07 1.19 6.41 -51.93 -0.33 0.86 16 45 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 46 H 0.06 1.12 8.13 -51.92 -0.42 0.70 16 47 H 0.39 10.08 5.93 -40.82 -0.24 9.84 16 48 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 49 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 50 H 0.08 1.41 5.89 -51.93 -0.31 1.10 16 LS Contribution 380.18 15.07 5.73 5.73 Total: -1.00 -32.66 380.18 -8.66 -41.32 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -7.62 Total: 11.55 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -1.00 Total: 1.45 kcal Atomic # 7 Polarization: -59.92 SS G_CDS: -0.91 Total: -60.83 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.09 Total: -12.08 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.07 Total: -4.08 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.66 -8.66 -41.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999299671.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.801 kcal (2) G-P(sol) polarization free energy of solvation -32.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds