Wall clock time and date at job start Wed Apr 1 2020 03:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34774 * 120.00166 * 2 1 4 4 O 1.21273 * 120.00002 * 1.72903 * 3 2 1 5 5 C 1.50707 * 119.99759 * 181.73095 * 3 2 1 6 6 C 1.53116 * 109.52225 * 283.06687 * 5 3 2 7 7 C 1.53039 * 109.27541 * 182.50664 * 6 5 3 8 8 N 1.46847 * 109.57740 * 59.08348 * 7 6 5 9 9 C 1.46898 * 111.00140 * 174.19664 * 8 7 6 10 10 C 1.52998 * 109.46840 * 201.81889 * 9 8 7 11 11 F 1.39902 * 109.47644 * 301.31003 * 10 9 8 12 12 F 1.39907 * 109.47176 * 61.31447 * 10 9 8 13 13 C 1.46855 * 111.19550 * 298.29025 * 8 7 6 14 14 C 1.53042 * 109.52294 * 61.74240 * 13 8 7 15 15 C 1.46502 * 119.99700 * 179.97438 * 2 1 3 16 16 C 1.53778 * 113.61431 * 110.85704 * 15 2 1 17 17 C 1.53779 * 87.07925 * 270.88099 * 16 15 2 18 18 N 1.46499 * 113.61514 * 89.11850 * 17 16 15 19 19 C 1.36935 * 120.00320 * 159.62914 * 18 17 16 20 20 H 1.07994 * 120.00072 * 0.02562 * 19 18 17 21 21 C 1.38821 * 119.99935 * 179.97438 * 19 18 17 22 22 N 1.31622 * 119.99980 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99931 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46822 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47362 * 119.99976 * 23 21 19 26 26 H 1.48499 * 109.46876 * 240.00198 * 23 21 19 27 27 C 1.53774 * 87.08378 * 334.56643 * 17 16 15 28 28 H 1.09005 * 109.47018 * 265.19916 * 1 2 3 29 29 H 1.09001 * 109.46827 * 25.19344 * 1 2 3 30 30 H 1.08997 * 109.47210 * 145.19897 * 1 2 3 31 31 H 1.09000 * 109.51918 * 43.19330 * 5 3 2 32 32 H 1.08995 * 109.50120 * 302.38350 * 6 5 3 33 33 H 1.09004 * 109.50450 * 62.49908 * 6 5 3 34 34 H 1.09006 * 109.41205 * 299.06718 * 7 6 5 35 35 H 1.09000 * 109.45569 * 179.12875 * 7 6 5 36 36 H 1.09004 * 109.46935 * 321.81568 * 9 8 7 37 37 H 1.09000 * 109.47343 * 81.82140 * 9 8 7 38 38 H 1.09007 * 109.46943 * 181.30758 * 10 9 8 39 39 H 1.08996 * 109.46186 * 301.72619 * 13 8 7 40 40 H 1.09001 * 109.45289 * 181.74973 * 13 8 7 41 41 H 1.08997 * 109.50425 * 180.87524 * 14 13 8 42 42 H 1.09002 * 109.50313 * 60.75711 * 14 13 8 43 43 H 1.09002 * 112.90751 * 242.10850 * 15 2 1 44 44 H 1.08996 * 113.61594 * 25.43263 * 16 15 2 45 45 H 1.09003 * 113.61599 * 156.33692 * 16 15 2 46 46 H 1.09007 * 113.61411 * 220.01518 * 17 16 15 47 47 H 0.97008 * 119.99389 * 339.63658 * 18 17 16 48 48 H 0.97000 * 119.99389 * 180.02562 * 22 21 19 49 49 H 1.09002 * 113.61570 * 270.88121 * 27 17 16 50 50 H 1.09006 * 113.61262 * 139.97912 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5330 2.2172 0.0317 5 6 3.6455 1.1673 -0.0394 6 6 4.1937 0.8199 1.3474 7 6 5.7225 0.8829 1.3167 8 7 6.1516 2.2311 0.9232 9 6 7.6113 2.3671 1.0163 10 6 7.9787 3.8471 1.1401 11 9 7.4907 4.5434 0.0290 12 9 7.4111 4.3726 2.3059 13 6 5.6767 2.5671 -0.4252 14 6 4.1464 2.5560 -0.4460 15 6 2.1975 -1.2688 0.0006 16 6 2.9399 -1.5521 -1.3160 17 6 1.6514 -2.2349 -1.8042 18 7 0.7183 -1.3212 -2.4680 19 6 -0.2451 -1.8159 -3.3060 20 1 -0.3172 -2.8797 -3.4773 21 6 -1.1296 -0.9500 -3.9345 22 7 -1.0419 0.3465 -3.7253 23 14 -2.4442 -1.6250 -5.0772 24 1 -2.3308 -3.1043 -5.1429 25 1 -3.7863 -1.2533 -4.5619 26 1 -2.2598 -1.0541 -6.4356 27 6 1.3182 -2.4879 -0.3244 28 1 -0.3633 -0.0860 1.0241 29 1 -0.3633 0.9299 -0.4375 30 1 -0.3633 -0.8438 -0.5865 31 1 3.9910 0.4291 -0.7631 32 1 3.8155 1.5352 2.0778 33 1 3.8753 -0.1854 1.6232 34 1 6.1006 0.1569 0.5968 35 1 6.1153 0.6512 2.3066 36 1 7.9711 1.8288 1.8932 37 1 8.0728 1.9519 0.1203 38 1 9.0629 3.9497 1.1858 39 1 6.0549 1.8332 -1.1368 40 1 6.0364 3.5586 -0.7001 41 1 3.7944 2.7901 -1.4506 42 1 3.7675 3.2993 0.2554 43 1 2.8164 -1.4010 0.8880 44 1 3.1961 -0.6522 -1.8752 45 1 3.7812 -2.2361 -1.2044 46 1 1.8295 -3.1470 -2.3738 47 1 0.7830 -0.3656 -2.3138 48 1 -1.6602 0.9514 -4.1643 49 1 1.7161 -3.4277 0.0582 50 1 0.2651 -2.3434 -0.0831 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999299671.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:41 Heat of formation + Delta-G solvation = -104.924487 kcal Electronic energy + Delta-G solvation = -32611.170793 eV Core-core repulsion = 28116.689189 eV Total energy + Delta-G solvation = -4494.481604 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.74215 -47.77712 -41.87819 -39.96865 -39.00741 -35.70450 -34.92512 -34.54336 -31.92142 -31.80988 -30.48215 -28.45886 -26.65361 -25.90350 -25.39730 -24.35240 -24.14011 -22.94885 -21.43749 -20.51516 -19.49086 -19.26303 -18.45843 -18.13273 -17.81010 -17.27475 -17.12547 -16.84871 -16.61718 -16.27373 -15.83661 -15.79328 -15.49909 -15.05082 -14.86512 -14.76037 -14.64778 -14.37905 -14.19709 -14.13819 -13.77964 -13.53346 -13.34538 -13.27803 -13.16936 -13.05003 -12.91841 -12.80287 -12.59145 -12.47719 -12.33446 -12.17879 -12.08243 -11.86035 -11.71764 -11.64553 -11.57020 -11.20229 -11.01616 -10.82569 -10.56621 -9.47581 -9.30204 -8.95721 -7.92814 -5.21957 1.45769 1.46017 1.55966 1.66346 2.10305 2.55248 2.75404 3.14019 3.39030 3.42031 3.54052 3.65913 3.71558 3.72332 3.77860 3.84792 3.97550 4.15035 4.21524 4.23590 4.27772 4.32985 4.39096 4.47124 4.55912 4.61201 4.63783 4.66819 4.71512 4.80561 4.84807 4.93211 4.95378 4.99404 5.01306 5.09736 5.13096 5.17608 5.21902 5.32803 5.38172 5.48602 5.56500 5.65024 6.02906 6.07202 6.27977 6.55597 7.26051 7.34501 8.14516 8.34355 9.29003 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.019013 B = 0.002698 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.319299 B =10374.582784 C =10815.847165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.585 5.585 3 C 0.508 3.492 4 O -0.596 6.596 5 C -0.100 4.100 6 C -0.099 4.099 7 C 0.065 3.935 8 N -0.556 5.556 9 C 0.002 3.998 10 C 0.256 3.744 11 F -0.222 7.222 12 F -0.220 7.220 13 C 0.052 3.948 14 C -0.096 4.096 15 C 0.115 3.885 16 C -0.157 4.157 17 C 0.138 3.862 18 N -0.721 5.721 19 C -0.236 4.236 20 H 0.080 0.920 21 C -0.074 4.074 22 N -0.966 5.966 23 Si 0.968 3.032 24 H -0.262 1.262 25 H -0.299 1.299 26 H -0.300 1.300 27 C -0.169 4.169 28 H 0.054 0.946 29 H 0.032 0.968 30 H 0.091 0.909 31 H 0.112 0.888 32 H 0.053 0.947 33 H 0.096 0.904 34 H 0.059 0.941 35 H 0.103 0.897 36 H 0.129 0.871 37 H 0.087 0.913 38 H 0.155 0.845 39 H 0.049 0.951 40 H 0.091 0.909 41 H 0.048 0.952 42 H 0.051 0.949 43 H 0.119 0.881 44 H 0.050 0.950 45 H 0.137 0.863 46 H 0.066 0.934 47 H 0.376 0.624 48 H 0.246 0.754 49 H 0.125 0.875 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.069 -3.806 13.603 27.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.316 5.316 3 C 0.298 3.702 4 O -0.477 6.477 5 C -0.121 4.121 6 C -0.137 4.137 7 C -0.062 4.062 8 N -0.281 5.281 9 C -0.126 4.126 10 C 0.202 3.798 11 F -0.204 7.204 12 F -0.202 7.202 13 C -0.076 4.076 14 C -0.134 4.134 15 C 0.013 3.987 16 C -0.196 4.196 17 C 0.028 3.972 18 N -0.361 5.361 19 C -0.368 4.368 20 H 0.098 0.902 21 C -0.267 4.267 22 N -0.616 5.616 23 Si 0.798 3.202 24 H -0.186 1.186 25 H -0.226 1.226 26 H -0.228 1.228 27 C -0.210 4.210 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.109 0.891 31 H 0.129 0.871 32 H 0.072 0.928 33 H 0.114 0.886 34 H 0.077 0.923 35 H 0.121 0.879 36 H 0.147 0.853 37 H 0.105 0.895 38 H 0.172 0.828 39 H 0.067 0.933 40 H 0.109 0.891 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.137 0.863 44 H 0.069 0.931 45 H 0.155 0.845 46 H 0.084 0.916 47 H 0.209 0.791 48 H 0.055 0.945 49 H 0.143 0.857 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 23.390 -3.067 13.826 27.343 hybrid contribution -1.537 0.384 -1.581 2.238 sum 21.853 -2.683 12.245 25.194 Atomic orbital electron populations 1.21639 0.80346 1.03043 1.00435 1.47600 1.06338 1.06120 1.71546 1.21311 0.91539 0.82592 0.74766 1.90643 1.71734 1.33037 1.52287 1.21519 0.88832 1.00060 1.01644 1.21566 0.96262 1.02684 0.93212 1.22140 0.93702 0.87938 1.02382 1.61794 1.11251 1.28747 1.26320 1.23354 0.88802 0.94302 1.06156 1.22675 0.97880 0.89195 0.70029 1.92848 1.90541 1.82114 1.54900 1.92958 1.88333 1.88533 1.50336 1.22385 0.93455 1.02687 0.89053 1.21324 0.95909 0.95690 1.00494 1.22273 0.94864 0.82793 0.98806 1.23971 0.98434 1.01272 0.95926 1.21527 0.90118 0.93418 0.92124 1.42582 1.35299 1.05752 1.52439 1.19668 1.06727 0.92572 1.17812 0.90191 1.25523 1.02479 0.95564 1.03126 1.69875 1.40653 1.02431 1.48648 0.85149 0.78863 0.78080 0.78106 1.18619 1.22623 1.22751 1.24094 0.99846 0.97621 0.99404 0.92800 0.94859 0.89115 0.87067 0.92802 0.88555 0.92310 0.87922 0.85337 0.89496 0.82772 0.93264 0.89083 0.93355 0.93031 0.86336 0.93120 0.84501 0.91636 0.79055 0.94478 0.85699 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.70 8.51 127.77 1.09 4.78 16 2 N -0.58 -20.80 2.25 -819.63 -1.85 -22.64 16 3 C 0.51 19.41 6.71 87.66 0.59 20.00 16 4 O -0.60 -29.02 15.48 -3.01 -0.05 -29.07 16 5 C -0.10 -2.74 1.83 -11.46 -0.02 -2.76 16 6 C -0.10 -2.00 5.26 30.65 0.16 -1.83 16 7 C 0.07 0.90 5.41 86.33 0.47 1.37 16 8 N -0.56 -9.80 4.52 -896.32 -4.05 -13.85 16 9 C 0.00 0.02 5.40 86.30 0.47 0.49 16 10 C 0.26 3.18 5.60 71.98 0.40 3.58 16 11 F -0.22 -4.32 14.43 44.97 0.65 -3.67 16 12 F -0.22 -4.37 17.28 44.97 0.78 -3.59 16 13 C 0.05 1.13 5.21 86.33 0.45 1.58 16 14 C -0.10 -2.87 4.85 30.65 0.15 -2.72 16 15 C 0.12 2.98 3.58 45.52 0.16 3.14 16 16 C -0.16 -4.05 6.40 31.12 0.20 -3.85 16 17 C 0.14 4.75 4.55 45.51 0.21 4.96 16 18 N -0.72 -34.60 3.51 -320.45 -1.13 -35.73 16 19 C -0.24 -12.63 9.98 84.04 0.84 -11.80 16 20 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 21 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 22 N -0.97 -60.36 13.06 21.65 0.28 -60.08 16 23 Si 0.97 46.39 29.55 68.60 2.03 48.41 16 24 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 25 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 26 H -0.30 -14.61 7.11 99.48 0.71 -13.91 16 27 C -0.17 -4.63 7.16 31.12 0.22 -4.40 16 28 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 29 H 0.03 1.67 7.31 -2.39 -0.02 1.65 16 30 H 0.09 4.07 4.36 -2.39 -0.01 4.06 16 31 H 0.11 2.76 4.96 -2.39 -0.01 2.75 16 32 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.10 1.51 5.79 -2.38 -0.01 1.50 16 34 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 35 H 0.10 0.99 7.92 -2.39 -0.02 0.97 16 36 H 0.13 0.61 7.76 -2.38 -0.02 0.60 16 37 H 0.09 0.57 7.97 -2.39 -0.02 0.55 16 38 H 0.16 0.48 8.14 -2.38 -0.02 0.46 16 39 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.09 2.13 5.28 -2.39 -0.01 2.12 16 41 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.05 1.83 7.85 -2.39 -0.02 1.81 16 43 H 0.12 2.13 6.00 -2.39 -0.01 2.12 16 44 H 0.05 1.57 6.41 -2.39 -0.02 1.56 16 45 H 0.14 2.24 8.14 -2.39 -0.02 2.22 16 46 H 0.07 2.20 8.13 -2.38 -0.02 2.18 16 47 H 0.38 20.18 5.93 -92.70 -0.55 19.63 16 48 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 49 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 50 H 0.06 1.90 5.89 -2.38 -0.01 1.89 16 Total: -1.00 -79.70 380.18 2.94 -76.77 By element: Atomic # 1 Polarization: 34.28 SS G_CDS: 0.42 Total: 34.70 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: 5.85 Total: 8.75 kcal Atomic # 7 Polarization: -125.56 SS G_CDS: -6.74 Total: -132.30 kcal Atomic # 8 Polarization: -29.02 SS G_CDS: -0.05 Total: -29.07 kcal Atomic # 9 Polarization: -8.69 SS G_CDS: 1.43 Total: -7.26 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.41 kcal Total: -79.70 2.94 -76.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999299671.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.158 kcal (2) G-P(sol) polarization free energy of solvation -79.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds