Wall clock time and date at job start Wed Apr 1 2020 03:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34774 * 120.00089 * 2 1 4 4 O 1.21478 * 120.00007 * 182.36420 * 3 2 1 5 5 C 1.48443 * 119.99986 * 2.37080 * 3 2 1 6 6 C 1.39081 * 120.51155 * 172.92132 * 5 3 2 7 7 C 1.39845 * 118.18954 * 180.23790 * 6 5 3 8 8 N 1.38517 * 120.50967 * 179.73501 * 7 6 5 9 9 C 1.47839 * 110.99919 * 58.88179 * 8 7 6 10 10 C 1.54910 * 104.79758 * 146.36222 * 9 8 7 11 11 C 1.55139 * 101.64981 * 322.92721 * 10 9 8 12 12 C 1.47444 * 110.99402 * 179.72060 * 8 7 6 13 13 N 1.32843 * 118.97869 * 359.45988 * 7 6 5 14 14 C 1.31846 * 120.90329 * 0.28025 * 13 7 6 15 15 N 1.31547 * 122.01329 * 359.97438 * 14 13 7 16 16 C 1.46503 * 119.99838 * 180.02562 * 2 1 3 17 17 C 1.53771 * 113.61839 * 39.13579 * 16 2 1 18 18 C 1.53959 * 87.02301 * 220.04661 * 17 16 2 19 19 N 1.46503 * 113.74126 * 139.93820 * 18 17 16 20 20 C 1.36937 * 119.99625 * 107.40755 * 19 18 17 21 21 H 1.08003 * 120.00102 * 0.02562 * 20 19 18 22 22 C 1.38813 * 120.00027 * 179.97438 * 20 19 18 23 23 N 1.31621 * 119.99672 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99878 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47070 * 60.00265 * 24 22 20 26 26 H 1.48506 * 109.46826 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.47256 * 300.00080 * 24 22 20 28 28 C 1.53781 * 87.10771 * 25.36034 * 18 17 16 29 29 H 1.08994 * 109.47255 * 83.88436 * 1 2 3 30 30 H 1.09002 * 109.46732 * 203.88390 * 1 2 3 31 31 H 1.08997 * 109.47037 * 323.88247 * 1 2 3 32 32 H 1.08006 * 120.90013 * 359.97160 * 6 5 3 33 33 H 1.09007 * 110.37738 * 27.53042 * 9 8 7 34 34 H 1.09003 * 110.37429 * 265.19306 * 9 8 7 35 35 H 1.08998 * 110.98784 * 204.83858 * 10 9 8 36 36 H 1.08998 * 110.98540 * 81.02079 * 10 9 8 37 37 H 1.08998 * 110.70477 * 154.03794 * 11 10 9 38 38 H 1.09003 * 110.70658 * 277.09143 * 11 10 9 39 39 H 1.09006 * 109.88524 * 117.34113 * 12 8 7 40 40 H 1.08991 * 109.89569 * 356.14907 * 12 8 7 41 41 H 1.07998 * 118.99319 * 180.02562 * 14 13 7 42 42 H 1.09000 * 112.84629 * 170.33579 * 16 2 1 43 43 H 1.09007 * 113.61478 * 334.56689 * 17 16 2 44 44 H 1.08999 * 113.62093 * 105.46849 * 17 16 2 45 45 H 1.08990 * 113.53753 * 270.81355 * 18 17 16 46 46 H 0.96992 * 120.00402 * 287.39977 * 19 18 17 47 47 H 0.97002 * 119.99771 * 179.97438 * 23 22 20 48 48 H 1.08998 * 113.61962 * 220.08868 * 28 18 17 49 49 H 1.09005 * 113.61281 * 89.18828 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3529 1.1676 -0.0434 5 6 1.3977 2.4522 0.0532 6 6 2.0797 3.6552 0.2014 7 6 1.3327 4.8364 0.2507 8 7 1.9623 6.0608 0.4028 9 6 2.9208 6.3037 -0.6963 10 6 2.8741 7.8342 -0.9309 11 6 1.3698 8.1398 -0.7062 12 6 0.9807 7.1608 0.4214 13 7 0.0104 4.7665 0.1440 14 6 -0.5969 3.6053 -0.0009 15 7 0.0684 2.4714 -0.0469 16 6 2.1975 -1.2688 -0.0006 17 6 1.5591 -2.3483 -0.8903 18 6 1.9075 -3.3559 0.2204 19 7 0.8613 -4.3527 0.4619 20 6 1.0451 -5.6489 0.0606 21 1 1.9613 -5.9366 -0.4335 22 6 0.0541 -6.5936 0.2899 23 7 -1.0623 -6.2431 0.8926 24 14 0.3045 -8.3617 -0.2582 25 1 1.5004 -8.9250 0.4183 26 1 -0.8919 -9.1651 0.1002 27 1 0.5036 -8.4005 -1.7292 28 6 1.8675 -2.1712 1.2001 29 1 -0.3633 0.1095 -1.0218 30 1 -0.3633 -0.9397 0.4161 31 1 -0.3633 0.8301 0.6057 32 1 3.1566 3.6761 0.2807 33 1 2.6096 5.7722 -1.5957 34 1 3.9236 5.9956 -0.4003 35 1 3.1752 8.0826 -1.9486 36 1 3.4923 8.3598 -0.2031 37 1 1.2299 9.1722 -0.3856 38 1 0.7961 7.9377 -1.6108 39 1 1.0144 7.6715 1.3839 40 1 -0.0201 6.7680 0.2425 41 1 -1.6734 3.5844 -0.0851 42 1 3.2667 -1.1401 -0.1691 43 1 0.4874 -2.2147 -1.0381 44 1 2.0976 -2.5208 -1.8221 45 1 2.8973 -3.7989 0.1114 46 1 0.0387 -4.0945 0.9062 47 1 -1.7549 -6.9031 1.0525 48 1 2.6546 -2.2008 1.9535 49 1 0.8803 -1.9890 1.6249 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999402481.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:48 Heat of formation + Delta-G solvation = 90.048984 kcal Electronic energy + Delta-G solvation = -29710.205039 eV Core-core repulsion = 25674.867306 eV Total energy + Delta-G solvation = -4035.337733 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.83699 -40.14771 -39.12557 -37.95736 -35.07225 -34.15040 -33.14846 -32.79556 -30.40514 -29.98093 -29.56175 -26.88283 -26.04180 -25.11730 -24.52166 -24.20209 -22.76331 -21.78804 -21.44877 -19.98922 -18.84858 -18.20657 -18.00201 -17.08548 -16.61443 -16.42070 -16.03956 -15.78418 -15.65840 -15.30520 -14.87242 -14.54811 -14.47118 -14.13061 -13.90046 -13.80680 -13.41094 -13.08285 -12.91528 -12.78963 -12.67993 -12.22267 -12.05607 -11.82093 -11.77415 -11.76612 -11.31799 -11.24520 -11.23293 -10.90620 -10.81453 -10.62494 -10.51111 -10.32715 -10.26196 -10.18770 -9.95064 -9.62741 -9.27932 -8.94957 -8.89372 -8.41165 -6.98959 -5.79935 -3.08864 0.25364 0.58456 2.56950 2.77321 3.04036 3.43272 3.47814 3.48646 3.51043 3.69618 3.73268 4.02981 4.16269 4.33344 4.46642 4.58308 4.63724 4.74668 4.88797 4.91407 5.12398 5.13176 5.18149 5.20703 5.26820 5.31048 5.37500 5.39667 5.44292 5.46096 5.48267 5.67206 5.78162 5.85289 5.90624 5.93895 5.97769 6.13828 6.21273 6.30817 6.35108 6.45368 6.49964 6.56750 6.61879 6.78950 7.02960 7.43767 7.65203 7.68356 8.04688 8.38433 9.49762 10.06395 10.41182 11.42279 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.034142 B = 0.001835 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.914232 B =15256.839099 C =15776.137696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.570 5.570 3 C 0.562 3.438 4 O -0.534 6.534 5 C 0.154 3.846 6 C -0.181 4.181 7 C 0.353 3.647 8 N -0.467 5.467 9 C 0.048 3.952 10 C -0.129 4.129 11 C -0.141 4.141 12 C 0.027 3.973 13 N -0.549 5.549 14 C 0.316 3.684 15 N -0.506 5.506 16 C 0.111 3.889 17 C -0.173 4.173 18 C 0.170 3.830 19 N -0.709 5.709 20 C -0.245 4.245 21 H 0.072 0.928 22 C -0.012 4.012 23 N -0.932 5.932 24 Si 0.908 3.092 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.286 1.286 28 C -0.161 4.161 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.103 0.897 32 H 0.159 0.841 33 H 0.060 0.940 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.105 0.895 41 H 0.203 0.797 42 H 0.115 0.885 43 H 0.085 0.915 44 H 0.061 0.939 45 H 0.080 0.920 46 H 0.385 0.615 47 H 0.256 0.744 48 H 0.065 0.935 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.593 30.714 -2.975 31.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.299 5.299 3 C 0.347 3.653 4 O -0.411 6.411 5 C 0.009 3.991 6 C -0.207 4.207 7 C 0.111 3.889 8 N -0.185 5.185 9 C -0.078 4.078 10 C -0.167 4.167 11 C -0.179 4.179 12 C -0.100 4.100 13 N -0.269 5.269 14 C 0.027 3.973 15 N -0.225 5.225 16 C 0.008 3.992 17 C -0.215 4.215 18 C 0.057 3.943 19 N -0.346 5.346 20 C -0.377 4.377 21 H 0.090 0.910 22 C -0.208 4.208 23 N -0.580 5.580 24 Si 0.739 3.261 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.212 1.212 28 C -0.202 4.202 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.121 0.879 32 H 0.176 0.824 33 H 0.078 0.922 34 H 0.114 0.886 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.123 0.877 41 H 0.220 0.780 42 H 0.133 0.867 43 H 0.103 0.897 44 H 0.079 0.921 45 H 0.098 0.902 46 H 0.219 0.781 47 H 0.066 0.934 48 H 0.084 0.916 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.606 30.446 -2.651 30.773 hybrid contribution 0.096 -0.818 -0.610 1.024 sum 3.702 29.628 -3.261 30.036 Atomic orbital electron populations 1.22379 0.77854 1.03879 1.02980 1.47811 1.08163 1.05099 1.68810 1.17834 0.86503 0.82837 0.78153 1.90770 1.12708 1.86647 1.50979 1.21566 0.89969 0.94300 0.93309 1.22335 1.03382 0.91038 1.03916 1.20151 0.88622 0.91539 0.88544 1.60465 1.16002 1.00207 1.41799 1.23207 0.96402 0.97285 0.90871 1.22758 0.96959 0.94249 1.02777 1.22779 0.95966 1.00214 0.98938 1.23064 0.97114 0.90041 0.99735 1.68132 1.10080 1.30892 1.17839 1.24979 1.01200 0.81826 0.89321 1.68952 1.07594 1.30031 1.15966 1.22763 0.97309 0.80002 0.99094 1.24364 1.01282 0.96436 0.99418 1.21363 0.93791 0.87235 0.91888 1.42338 1.17177 1.05558 1.69574 1.19272 1.01268 0.85539 1.31572 0.91035 1.24765 0.96530 0.98299 1.01218 1.69650 1.07265 1.33806 1.47297 0.86252 0.76831 0.84705 0.78295 1.21208 1.21695 1.21231 1.23935 1.01987 0.97015 0.97215 0.92408 0.91034 0.87898 0.82370 0.92176 0.88633 0.89951 0.89986 0.90078 0.91088 0.89779 0.87730 0.78039 0.86688 0.89684 0.92064 0.90215 0.78068 0.93401 0.91630 0.89884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.93 8.06 59.85 0.48 1.41 16 2 N -0.57 -8.41 3.08 -173.90 -0.54 -8.95 16 3 C 0.56 8.47 7.67 -12.06 -0.09 8.38 16 4 O -0.53 -9.23 15.91 5.39 0.09 -9.14 16 5 C 0.15 1.95 6.64 -82.70 -0.55 1.40 16 6 C -0.18 -2.05 9.02 -38.67 -0.35 -2.40 16 7 C 0.35 3.61 6.16 -154.85 -0.95 2.66 16 8 N -0.47 -4.00 5.20 -169.79 -0.88 -4.88 16 9 C 0.05 0.31 6.13 -2.30 -0.01 0.30 16 10 C -0.13 -0.60 7.08 -24.59 -0.17 -0.78 16 11 C -0.14 -0.70 6.94 -24.91 -0.17 -0.87 16 12 C 0.03 0.19 6.77 -2.83 -0.02 0.17 16 13 N -0.55 -5.41 8.08 -13.83 -0.11 -5.52 16 14 C 0.32 2.90 12.27 -92.32 -1.13 1.77 16 15 N -0.51 -5.67 6.23 -11.22 -0.07 -5.74 16 16 C 0.11 1.76 4.22 -67.12 -0.28 1.48 16 17 C -0.17 -2.99 7.31 -25.83 -0.19 -3.18 16 18 C 0.17 3.33 4.48 -67.02 -0.30 3.03 16 19 N -0.71 -17.43 5.41 -52.55 -0.28 -17.71 16 20 C -0.25 -6.73 9.97 -15.06 -0.15 -6.88 16 21 H 0.07 1.90 7.83 -52.48 -0.41 1.48 16 22 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 23 N -0.93 -27.75 13.06 55.49 0.72 -27.03 16 24 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 28 C -0.16 -2.72 7.34 -25.92 -0.19 -2.91 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.99 6.10 -51.93 -0.32 0.67 16 31 H 0.10 1.24 5.26 -51.94 -0.27 0.97 16 32 H 0.16 1.74 7.71 -52.48 -0.40 1.34 16 33 H 0.06 0.43 7.78 -51.93 -0.40 0.02 16 34 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.10 0.84 5.94 -51.93 -0.31 0.53 16 41 H 0.20 1.14 8.06 -52.49 -0.42 0.71 16 42 H 0.12 1.86 7.20 -51.93 -0.37 1.48 16 43 H 0.08 1.53 6.67 -51.92 -0.35 1.18 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.08 1.55 8.10 -51.93 -0.42 1.13 16 46 H 0.39 10.00 7.92 -40.82 -0.32 9.68 16 47 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 48 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 49 H 0.08 1.42 6.88 -51.93 -0.36 1.06 16 LS Contribution 390.46 15.07 5.88 5.88 Total: -1.00 -32.00 390.46 -11.70 -43.70 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -7.30 Total: 9.07 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -4.18 Total: 3.14 kcal Atomic # 7 Polarization: -68.66 SS G_CDS: -1.16 Total: -69.82 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.09 Total: -9.14 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.00 -11.70 -43.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999402481.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.751 kcal (2) G-P(sol) polarization free energy of solvation -32.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds