Wall clock time and date at job start Wed Apr 1 2020 03:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34774 * 120.00089 * 2 1 4 4 O 1.21478 * 120.00007 * 182.36420 * 3 2 1 5 5 C 1.48443 * 119.99986 * 2.37080 * 3 2 1 6 6 C 1.39081 * 120.51155 * 172.92132 * 5 3 2 7 7 C 1.39845 * 118.18954 * 180.23790 * 6 5 3 8 8 N 1.38517 * 120.50967 * 179.73501 * 7 6 5 9 9 C 1.47839 * 110.99919 * 58.88179 * 8 7 6 10 10 C 1.54910 * 104.79758 * 146.36222 * 9 8 7 11 11 C 1.55139 * 101.64981 * 322.92721 * 10 9 8 12 12 C 1.47444 * 110.99402 * 179.72060 * 8 7 6 13 13 N 1.32843 * 118.97869 * 359.45988 * 7 6 5 14 14 C 1.31846 * 120.90329 * 0.28025 * 13 7 6 15 15 N 1.31547 * 122.01329 * 359.97438 * 14 13 7 16 16 C 1.46503 * 119.99838 * 180.02562 * 2 1 3 17 17 C 1.53771 * 113.61839 * 39.13579 * 16 2 1 18 18 C 1.53959 * 87.02301 * 220.04661 * 17 16 2 19 19 N 1.46503 * 113.74126 * 139.93820 * 18 17 16 20 20 C 1.36937 * 119.99625 * 107.40755 * 19 18 17 21 21 H 1.08003 * 120.00102 * 0.02562 * 20 19 18 22 22 C 1.38813 * 120.00027 * 179.97438 * 20 19 18 23 23 N 1.31621 * 119.99672 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99878 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47070 * 60.00265 * 24 22 20 26 26 H 1.48506 * 109.46826 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.47256 * 300.00080 * 24 22 20 28 28 C 1.53781 * 87.10771 * 25.36034 * 18 17 16 29 29 H 1.08994 * 109.47255 * 83.88436 * 1 2 3 30 30 H 1.09002 * 109.46732 * 203.88390 * 1 2 3 31 31 H 1.08997 * 109.47037 * 323.88247 * 1 2 3 32 32 H 1.08006 * 120.90013 * 359.97160 * 6 5 3 33 33 H 1.09007 * 110.37738 * 27.53042 * 9 8 7 34 34 H 1.09003 * 110.37429 * 265.19306 * 9 8 7 35 35 H 1.08998 * 110.98784 * 204.83858 * 10 9 8 36 36 H 1.08998 * 110.98540 * 81.02079 * 10 9 8 37 37 H 1.08998 * 110.70477 * 154.03794 * 11 10 9 38 38 H 1.09003 * 110.70658 * 277.09143 * 11 10 9 39 39 H 1.09006 * 109.88524 * 117.34113 * 12 8 7 40 40 H 1.08991 * 109.89569 * 356.14907 * 12 8 7 41 41 H 1.07998 * 118.99319 * 180.02562 * 14 13 7 42 42 H 1.09000 * 112.84629 * 170.33579 * 16 2 1 43 43 H 1.09007 * 113.61478 * 334.56689 * 17 16 2 44 44 H 1.08999 * 113.62093 * 105.46849 * 17 16 2 45 45 H 1.08990 * 113.53753 * 270.81355 * 18 17 16 46 46 H 0.96992 * 120.00402 * 287.39977 * 19 18 17 47 47 H 0.97002 * 119.99771 * 179.97438 * 23 22 20 48 48 H 1.08998 * 113.61962 * 220.08868 * 28 18 17 49 49 H 1.09005 * 113.61281 * 89.18828 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3529 1.1676 -0.0434 5 6 1.3977 2.4522 0.0532 6 6 2.0797 3.6552 0.2014 7 6 1.3327 4.8364 0.2507 8 7 1.9623 6.0608 0.4028 9 6 2.9208 6.3037 -0.6963 10 6 2.8741 7.8342 -0.9309 11 6 1.3698 8.1398 -0.7062 12 6 0.9807 7.1608 0.4214 13 7 0.0104 4.7665 0.1440 14 6 -0.5969 3.6053 -0.0009 15 7 0.0684 2.4714 -0.0469 16 6 2.1975 -1.2688 -0.0006 17 6 1.5591 -2.3483 -0.8903 18 6 1.9075 -3.3559 0.2204 19 7 0.8613 -4.3527 0.4619 20 6 1.0451 -5.6489 0.0606 21 1 1.9613 -5.9366 -0.4335 22 6 0.0541 -6.5936 0.2899 23 7 -1.0623 -6.2431 0.8926 24 14 0.3045 -8.3617 -0.2582 25 1 1.5004 -8.9250 0.4183 26 1 -0.8919 -9.1651 0.1002 27 1 0.5036 -8.4005 -1.7292 28 6 1.8675 -2.1712 1.2001 29 1 -0.3633 0.1095 -1.0218 30 1 -0.3633 -0.9397 0.4161 31 1 -0.3633 0.8301 0.6057 32 1 3.1566 3.6761 0.2807 33 1 2.6096 5.7722 -1.5957 34 1 3.9236 5.9956 -0.4003 35 1 3.1752 8.0826 -1.9486 36 1 3.4923 8.3598 -0.2031 37 1 1.2299 9.1722 -0.3856 38 1 0.7961 7.9377 -1.6108 39 1 1.0144 7.6715 1.3839 40 1 -0.0201 6.7680 0.2425 41 1 -1.6734 3.5844 -0.0851 42 1 3.2667 -1.1401 -0.1691 43 1 0.4874 -2.2147 -1.0381 44 1 2.0976 -2.5208 -1.8221 45 1 2.8973 -3.7989 0.1114 46 1 0.0387 -4.0945 0.9062 47 1 -1.7549 -6.9031 1.0525 48 1 2.6546 -2.2008 1.9535 49 1 0.8803 -1.9890 1.6249 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999402481.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:47 Heat of formation + Delta-G solvation = 71.613733 kcal Electronic energy + Delta-G solvation = -29711.004452 eV Core-core repulsion = 25674.867306 eV Total energy + Delta-G solvation = -4036.137146 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.65638 -41.27875 -39.91596 -39.25449 -36.36510 -35.32786 -34.49415 -33.74284 -31.89610 -31.08058 -30.09864 -28.02465 -27.22231 -26.54304 -25.88231 -25.25218 -23.98862 -22.56980 -22.05563 -21.08768 -20.30145 -19.18654 -19.03586 -18.77565 -17.72534 -17.29044 -16.99560 -16.68703 -16.54576 -16.45756 -16.03841 -15.91389 -15.70855 -15.23030 -14.96384 -14.69992 -14.44658 -14.29517 -14.12570 -13.94304 -13.51063 -13.29911 -13.26164 -13.13159 -13.10752 -12.74716 -12.30369 -12.28210 -12.20935 -12.15997 -12.06131 -11.97183 -11.81118 -11.69651 -11.52767 -11.50486 -11.30976 -11.06660 -10.86227 -10.18846 -9.74134 -9.54599 -8.98648 -7.93540 -5.21968 -0.66069 -0.19260 1.49222 1.51477 1.53087 1.57609 1.69740 2.28555 2.57887 2.64960 2.77882 3.06375 3.37588 3.38493 3.64177 3.67075 3.72693 3.77664 3.78634 3.93567 4.05233 4.10014 4.20687 4.26106 4.27101 4.40765 4.43343 4.45655 4.61098 4.72050 4.78560 4.83757 4.86847 4.87129 4.88628 4.93319 5.01549 5.05099 5.11748 5.12690 5.24540 5.30865 5.38703 5.44199 5.51364 5.60568 5.79174 5.85331 6.24623 6.28291 6.78144 6.94385 7.34885 8.09674 8.33821 9.29240 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.034142 B = 0.001835 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.914232 B =15256.839099 C =15776.137696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.572 5.572 3 C 0.560 3.440 4 O -0.562 6.562 5 C 0.141 3.859 6 C -0.186 4.186 7 C 0.356 3.644 8 N -0.475 5.475 9 C 0.043 3.957 10 C -0.123 4.123 11 C -0.135 4.135 12 C 0.023 3.977 13 N -0.550 5.550 14 C 0.319 3.681 15 N -0.516 5.516 16 C 0.126 3.874 17 C -0.160 4.160 18 C 0.155 3.845 19 N -0.722 5.722 20 C -0.246 4.246 21 H 0.077 0.923 22 C -0.074 4.074 23 N -0.968 5.968 24 Si 0.972 3.028 25 H -0.279 1.279 26 H -0.296 1.296 27 H -0.279 1.279 28 C -0.149 4.149 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.116 0.884 32 H 0.156 0.844 33 H 0.053 0.947 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.238 0.762 42 H 0.115 0.885 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.081 0.919 46 H 0.375 0.625 47 H 0.251 0.749 48 H 0.073 0.927 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.832 32.643 -3.587 33.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.301 5.301 3 C 0.347 3.653 4 O -0.440 6.440 5 C -0.004 4.004 6 C -0.212 4.212 7 C 0.113 3.887 8 N -0.192 5.192 9 C -0.082 4.082 10 C -0.161 4.161 11 C -0.173 4.173 12 C -0.103 4.103 13 N -0.270 5.270 14 C 0.031 3.969 15 N -0.235 5.235 16 C 0.022 3.978 17 C -0.202 4.202 18 C 0.044 3.956 19 N -0.359 5.359 20 C -0.378 4.378 21 H 0.095 0.905 22 C -0.266 4.266 23 N -0.618 5.618 24 Si 0.801 3.199 25 H -0.205 1.205 26 H -0.223 1.223 27 H -0.205 1.205 28 C -0.189 4.189 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.133 0.867 32 H 0.174 0.826 33 H 0.071 0.929 34 H 0.118 0.882 35 H 0.115 0.885 36 H 0.107 0.893 37 H 0.115 0.885 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.114 0.886 41 H 0.254 0.746 42 H 0.133 0.867 43 H 0.097 0.903 44 H 0.085 0.915 45 H 0.099 0.901 46 H 0.207 0.793 47 H 0.060 0.940 48 H 0.092 0.908 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.879 32.422 -3.283 32.818 hybrid contribution 0.064 -1.257 -0.409 1.323 sum 3.943 31.165 -3.692 31.629 Atomic orbital electron populations 1.22430 0.76744 1.03810 1.03504 1.47831 1.08780 1.04689 1.68784 1.18164 0.86337 0.83553 0.77271 1.90744 1.13929 1.87194 1.52160 1.21230 0.90717 0.93378 0.95035 1.22323 1.03371 0.91144 1.04374 1.20310 0.88787 0.91882 0.87715 1.60495 1.16507 1.00002 1.42224 1.23317 0.96048 0.98836 0.89981 1.22771 0.96871 0.92545 1.03864 1.22762 0.96020 1.00496 0.98059 1.23139 0.96287 0.89995 1.00832 1.68266 1.09825 1.31059 1.17874 1.25694 1.02487 0.81004 0.87716 1.68878 1.06829 1.31107 1.16688 1.22478 0.97279 0.80378 0.97638 1.24132 1.01102 0.95921 0.99045 1.21644 0.92637 0.87225 0.94069 1.42473 1.17917 1.05714 1.69800 1.19672 1.01097 0.86787 1.30273 0.90464 1.25544 0.96602 1.02179 1.02287 1.69802 1.08092 1.34668 1.49224 0.85235 0.76498 0.80088 0.78064 1.20475 1.22270 1.20488 1.23776 1.02189 0.95633 0.97296 0.91870 0.92042 0.86680 0.82608 0.92853 0.88243 0.88534 0.89281 0.88457 0.91238 0.89394 0.88645 0.74578 0.86670 0.90275 0.91522 0.90059 0.79259 0.94031 0.90813 0.90130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.94 8.06 127.77 1.03 2.97 16 2 N -0.57 -16.56 3.08 -822.40 -2.54 -19.10 16 3 C 0.56 16.70 7.67 86.96 0.67 17.37 16 4 O -0.56 -19.39 15.91 -3.65 -0.06 -19.45 16 5 C 0.14 3.48 6.64 41.84 0.28 3.76 16 6 C -0.19 -4.13 9.02 22.86 0.21 -3.93 16 7 C 0.36 6.91 6.16 133.27 0.82 7.73 16 8 N -0.47 -7.53 5.20 -691.11 -3.60 -11.13 16 9 C 0.04 0.51 6.13 86.78 0.53 1.04 16 10 C -0.12 -0.87 7.08 31.98 0.23 -0.64 16 11 C -0.14 -1.05 6.94 31.78 0.22 -0.83 16 12 C 0.02 0.29 6.77 86.65 0.59 0.88 16 13 N -0.55 -9.96 8.08 -197.66 -1.60 -11.55 16 14 C 0.32 5.25 12.27 180.94 2.22 7.47 16 15 N -0.52 -10.85 6.23 -189.41 -1.18 -12.03 16 16 C 0.13 3.91 4.22 45.51 0.19 4.10 16 17 C -0.16 -5.46 7.31 31.18 0.23 -5.24 16 18 C 0.15 6.03 4.48 45.58 0.20 6.23 16 19 N -0.72 -35.78 5.41 -320.16 -1.73 -37.51 16 20 C -0.25 -13.53 9.97 84.03 0.84 -12.70 16 21 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 22 C -0.07 -4.19 5.50 84.86 0.47 -3.73 16 23 N -0.97 -58.51 13.06 21.65 0.28 -58.22 16 24 Si 0.97 45.84 29.55 68.60 2.03 47.86 16 25 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 26 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 27 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 28 C -0.15 -4.95 7.34 31.12 0.23 -4.72 16 29 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.06 1.68 6.10 -2.39 -0.01 1.66 16 31 H 0.12 2.65 5.26 -2.41 -0.01 2.64 16 32 H 0.16 3.45 7.71 -2.91 -0.02 3.43 16 33 H 0.05 0.71 7.78 -2.38 -0.02 0.69 16 34 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 40 H 0.10 1.38 5.94 -2.39 -0.01 1.37 16 41 H 0.24 1.97 8.06 -2.91 -0.02 1.94 16 42 H 0.12 3.64 7.20 -2.39 -0.02 3.63 16 43 H 0.08 2.82 6.67 -2.38 -0.02 2.80 16 44 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.08 3.12 8.10 -2.39 -0.02 3.11 16 46 H 0.38 19.86 7.92 -92.71 -0.73 19.13 16 47 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 48 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 49 H 0.08 2.74 6.88 -2.38 -0.02 2.73 16 Total: -1.00 -68.38 390.46 0.80 -67.58 By element: Atomic # 1 Polarization: 33.54 SS G_CDS: 0.24 Total: 33.78 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: 8.95 Total: 19.77 kcal Atomic # 7 Polarization: -139.19 SS G_CDS: -10.36 Total: -149.55 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.06 Total: -19.45 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.86 kcal Total: -68.38 0.80 -67.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999402481.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.190 kcal (2) G-P(sol) polarization free energy of solvation -68.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds