Wall clock time and date at job start Wed Apr 1 2020 02:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.29112 * 126.00930 * 2 1 4 4 N 1.29018 * 110.25871 * 179.97438 * 3 2 1 5 5 C 1.32905 * 108.63675 * 359.97438 * 4 3 2 6 6 C 1.34400 * 126.00894 * 180.02562 * 2 1 3 7 7 C 1.50537 * 129.24781 * 0.11097 * 6 2 1 8 8 C 1.53442 * 108.32162 * 163.57580 * 7 6 2 9 9 H 1.09003 * 109.45504 * 289.70721 * 8 7 6 10 10 C 1.50694 * 109.45799 * 169.74082 * 8 7 6 11 11 O 1.21285 * 120.00002 * 0.02562 * 10 8 7 12 12 N 1.34778 * 120.00063 * 179.97438 * 10 8 7 13 13 C 1.46502 * 120.00019 * 179.97438 * 12 10 8 14 14 C 1.50697 * 109.47050 * 180.02562 * 13 12 10 15 15 C 1.29456 * 117.69291 * 95.00237 * 14 13 12 16 16 C 1.50327 * 123.64932 * 180.86005 * 15 14 13 17 17 N 1.47008 * 109.16689 * 349.01943 * 16 15 14 18 18 C 1.36933 * 121.37728 * 222.97286 * 17 16 15 19 19 H 1.08001 * 120.00418 * 155.34050 * 18 17 16 20 20 C 1.38817 * 119.99793 * 335.33661 * 18 17 16 21 21 N 1.31619 * 119.99895 * 159.83330 * 20 18 17 22 22 Si 1.86792 * 119.99963 * 339.83751 * 20 18 17 23 23 H 1.48502 * 109.47301 * 88.37395 * 22 20 18 24 24 H 1.48501 * 109.47319 * 208.37023 * 22 20 18 25 25 H 1.48498 * 109.47579 * 328.37042 * 22 20 18 26 26 C 1.47339 * 117.24732 * 42.94706 * 17 16 15 27 27 C 1.50094 * 117.67469 * 275.01071 * 14 13 12 28 28 C 1.53114 * 109.55101 * 49.71462 * 8 7 6 29 29 C 1.50601 * 129.16195 * 180.21752 * 5 4 3 30 30 H 1.08999 * 109.46940 * 269.97448 * 1 2 3 31 31 H 1.09004 * 109.46833 * 29.97355 * 1 2 3 32 32 H 1.08998 * 109.47471 * 149.97047 * 1 2 3 33 33 H 1.09002 * 109.69388 * 43.87180 * 7 6 2 34 34 H 1.08991 * 109.69594 * 283.28099 * 7 6 2 35 35 H 0.96995 * 119.99940 * 0.02562 * 12 10 8 36 36 H 1.08996 * 109.47298 * 59.99960 * 13 12 10 37 37 H 1.09004 * 109.47125 * 300.00051 * 13 12 10 38 38 H 1.07996 * 118.17627 * 0.82842 * 15 14 13 39 39 H 1.09000 * 109.52434 * 229.11408 * 16 15 14 40 40 H 1.09000 * 109.57352 * 108.95386 * 16 15 14 41 41 H 0.96996 * 119.99916 * 179.97438 * 21 20 18 42 42 H 1.08994 * 109.77909 * 57.81172 * 26 17 16 43 43 H 1.08998 * 109.77791 * 178.56437 * 26 17 16 44 44 H 1.09004 * 109.38228 * 40.73288 * 27 14 13 45 45 H 1.09004 * 109.31478 * 281.26729 * 27 14 13 46 46 H 1.09001 * 109.44979 * 49.97100 * 28 8 7 47 47 H 1.09005 * 109.44879 * 169.90332 * 28 8 7 48 48 H 1.08996 * 109.69341 * 283.08906 * 29 5 4 49 49 H 1.09004 * 109.69056 * 43.67069 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2241 1.0444 0.0000 4 7 3.4658 0.6942 0.0005 5 6 3.5327 -0.6332 0.0015 6 6 2.2551 -1.0872 -0.0005 7 6 1.8720 -2.5430 -0.0034 8 6 3.1011 -3.3644 -0.4146 9 1 3.3137 -3.1960 -1.4704 10 6 2.8264 -4.8282 -0.1851 11 8 1.7557 -5.1814 0.2619 12 7 3.7701 -5.7449 -0.4775 13 6 3.5032 -7.1680 -0.2539 14 6 4.7101 -7.9749 -0.6578 15 6 5.5586 -8.2922 0.2670 16 6 6.8154 -9.0763 0.0108 17 7 6.7725 -9.6252 -1.3522 18 6 7.1631 -10.9109 -1.6157 19 1 6.7751 -11.4265 -2.4818 20 6 8.0578 -11.5516 -0.7696 21 7 8.1363 -12.8655 -0.7679 22 14 9.1503 -10.5492 0.3665 23 1 8.4415 -10.3075 1.6488 24 1 10.4077 -11.2945 0.6289 25 1 9.4705 -9.2487 -0.2749 26 6 6.2912 -8.7349 -2.4231 27 6 4.8432 -8.3538 -2.1040 28 6 4.3084 -2.9345 0.4232 29 6 4.7468 -1.5242 0.0068 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3633 0.8903 -0.5134 32 1 -0.3634 -0.8897 -0.5143 33 1 1.0642 -2.7088 -0.7162 34 1 1.5490 -2.8398 0.9943 35 1 4.6262 -5.4625 -0.8354 36 1 2.6442 -7.4747 -0.8506 37 1 3.2908 -7.3362 0.8019 38 1 5.3524 -7.9756 1.2787 39 1 6.8886 -9.8922 0.7299 40 1 7.6812 -8.4220 0.1129 41 1 8.7618 -13.3132 -0.1770 42 1 6.9087 -7.8376 -2.4621 43 1 6.3336 -9.2536 -3.3808 44 1 4.5466 -7.5104 -2.7277 45 1 4.1920 -9.2018 -2.3160 46 1 4.0360 -2.9337 1.4787 47 1 5.1298 -3.6326 0.2611 48 1 5.1845 -1.5547 -0.9910 49 1 5.4793 -1.1427 0.7183 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001086031.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:55 Heat of formation + Delta-G solvation = 97.765704 kcal Electronic energy + Delta-G solvation = -29865.364204 eV Core-core repulsion = 25830.361093 eV Total energy + Delta-G solvation = -4035.003111 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.76538 -40.30652 -38.26537 -36.98918 -35.36311 -35.16407 -33.04153 -31.41050 -31.00544 -30.66483 -30.43573 -28.27625 -27.34015 -25.10905 -23.95724 -23.56129 -23.29444 -21.80628 -21.25611 -20.89566 -19.90034 -18.15144 -17.74142 -17.34977 -16.86957 -16.41540 -15.93862 -15.53200 -15.46892 -15.04810 -14.48463 -14.32308 -14.29406 -14.21226 -14.05991 -14.00934 -13.73878 -13.35624 -13.32688 -13.23554 -12.67929 -12.53942 -12.45777 -12.21080 -11.95472 -11.92219 -11.75687 -11.58293 -11.49707 -11.43737 -10.92823 -10.89631 -10.40475 -10.34250 -10.32637 -10.07204 -9.89201 -9.54621 -9.22645 -9.16763 -8.71444 -8.51324 -7.08605 -5.98950 -3.34641 1.18826 1.92058 2.19553 2.27571 2.39854 3.19930 3.26113 3.42833 3.45226 3.76064 4.01040 4.15093 4.30353 4.34234 4.46129 4.47368 4.48072 4.70465 4.75480 4.75701 4.83602 4.98692 5.01293 5.02710 5.10207 5.15127 5.36531 5.40238 5.44620 5.55486 5.56705 5.62415 5.71829 5.72689 5.79416 5.88288 5.89654 6.05199 6.08720 6.17487 6.26946 6.30993 6.40535 6.49616 6.67581 6.93184 7.27088 7.34239 7.84920 8.00621 8.16102 8.27290 8.85325 9.65677 10.03544 11.17144 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.023768 B = 0.002035 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.753752 B =13759.197673 C =14353.147266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.284 5.284 3 N -0.098 5.098 4 N -0.261 5.261 5 C -0.020 4.020 6 C -0.017 4.017 7 C -0.024 4.024 8 C -0.102 4.102 9 H 0.106 0.894 10 C 0.518 3.482 11 O -0.544 6.544 12 N -0.718 5.718 13 C 0.155 3.845 14 C -0.148 4.148 15 C -0.125 4.125 16 C 0.142 3.858 17 N -0.606 5.606 18 C -0.256 4.256 19 H 0.088 0.912 20 C 0.020 3.980 21 N -0.908 5.908 22 Si 0.884 3.116 23 H -0.287 1.287 24 H -0.303 1.303 25 H -0.273 1.273 26 C 0.146 3.854 27 C -0.094 4.094 28 C -0.112 4.112 29 C -0.031 4.031 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.403 0.597 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.040 0.960 41 H 0.263 0.737 42 H 0.027 0.973 43 H 0.067 0.933 44 H 0.059 0.941 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.085 0.915 48 H 0.088 0.912 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.849 23.892 1.009 27.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.075 5.075 3 N -0.076 5.076 4 N -0.125 5.125 5 C -0.161 4.161 6 C -0.151 4.151 7 C -0.063 4.063 8 C -0.124 4.124 9 H 0.124 0.876 10 C 0.304 3.696 11 O -0.421 6.421 12 N -0.369 5.369 13 C 0.033 3.967 14 C -0.149 4.149 15 C -0.146 4.146 16 C 0.017 3.983 17 N -0.330 5.330 18 C -0.384 4.384 19 H 0.106 0.894 20 C -0.178 4.178 21 N -0.551 5.551 22 Si 0.715 3.285 23 H -0.215 1.215 24 H -0.231 1.231 25 H -0.198 1.198 26 C 0.020 3.980 27 C -0.133 4.133 28 C -0.151 4.151 29 C -0.070 4.070 30 H 0.111 0.889 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.105 0.895 34 H 0.115 0.885 35 H 0.238 0.762 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.119 0.881 39 H 0.102 0.898 40 H 0.057 0.943 41 H 0.073 0.927 42 H 0.045 0.955 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.090 0.910 46 H 0.095 0.905 47 H 0.104 0.896 48 H 0.106 0.894 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.548 25.032 1.370 28.985 hybrid contribution 0.703 -0.492 0.615 1.056 sum -13.844 24.540 1.985 28.246 Atomic orbital electron populations 1.22307 0.72645 1.06043 1.05243 1.46836 1.09239 1.04577 1.46895 1.78601 0.96118 1.11248 1.21656 1.74805 1.09599 1.11946 1.16185 1.21702 0.94977 0.91387 1.08003 1.21814 0.91259 0.92245 1.09757 1.19906 0.97526 0.84607 1.04287 1.21335 0.96499 0.91657 1.02920 0.87568 1.20359 0.84086 0.87541 0.77623 1.90710 1.24587 1.81894 1.44950 1.46156 1.18068 1.06939 1.65749 1.20476 0.96741 0.78545 1.00969 1.20598 0.96024 1.01528 0.96754 1.22806 0.96779 0.97137 0.97865 1.20371 0.92780 0.96282 0.88839 1.44426 1.76398 1.11459 1.00754 1.18892 1.20817 0.86338 1.12372 0.89437 1.25234 0.98515 0.95402 0.98685 1.69826 1.38193 1.06982 1.40130 0.87010 0.80804 0.80146 0.80560 1.21474 1.23082 1.19812 1.20990 0.91194 0.93330 0.92445 1.20814 1.00366 1.00157 0.91979 1.21682 0.96616 0.96401 1.00376 1.19959 0.92588 0.91049 1.03430 0.88851 0.87883 0.88149 0.89481 0.88451 0.76242 0.91138 0.91340 0.88123 0.89787 0.94289 0.92705 0.95451 0.91445 0.92270 0.91038 0.90503 0.89630 0.89411 0.89140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.29 11.27 59.85 0.67 0.97 16 2 N -0.28 -2.45 3.73 -64.01 -0.24 -2.69 16 3 N -0.10 -1.16 13.19 60.35 0.80 -0.36 16 4 N -0.26 -3.29 12.40 33.16 0.41 -2.88 16 5 C -0.02 -0.20 7.11 -83.12 -0.59 -0.79 16 6 C -0.02 -0.14 6.76 -82.50 -0.56 -0.70 16 7 C -0.02 -0.17 4.71 -27.73 -0.13 -0.30 16 8 C -0.10 -0.71 2.50 -91.49 -0.23 -0.94 16 9 H 0.11 0.61 8.12 -51.93 -0.42 0.19 16 10 C 0.52 5.15 7.15 -10.99 -0.08 5.07 16 11 O -0.54 -7.36 15.82 5.55 0.09 -7.27 16 12 N -0.72 -6.95 5.37 -61.47 -0.33 -7.28 16 13 C 0.16 1.89 5.66 -5.19 -0.03 1.86 16 14 C -0.15 -2.13 5.23 -100.93 -0.53 -2.66 16 15 C -0.13 -2.02 9.47 -35.78 -0.34 -2.36 16 16 C 0.14 2.92 4.39 -5.10 -0.02 2.89 16 17 N -0.61 -13.70 2.81 -173.68 -0.49 -14.19 16 18 C -0.26 -6.94 10.14 -15.06 -0.15 -7.09 16 19 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 20 C 0.02 0.57 5.26 -17.43 -0.09 0.48 16 21 N -0.91 -27.33 13.97 55.49 0.78 -26.56 16 22 Si 0.88 21.60 24.17 -169.99 -4.11 17.49 16 23 H -0.29 -6.69 6.48 56.52 0.37 -6.32 16 24 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 25 H -0.27 -6.49 6.59 56.52 0.37 -6.12 16 26 C 0.15 2.64 6.57 -3.53 -0.02 2.61 16 27 C -0.09 -1.40 5.96 -28.13 -0.17 -1.57 16 28 C -0.11 -0.70 5.17 -26.44 -0.14 -0.84 16 29 C -0.03 -0.22 6.30 -27.70 -0.17 -0.39 16 30 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.10 0.19 7.71 -51.93 -0.40 -0.21 16 33 H 0.09 0.55 7.87 -51.93 -0.41 0.14 16 34 H 0.10 0.76 7.78 -51.93 -0.40 0.36 16 35 H 0.40 3.18 7.79 -40.82 -0.32 2.86 16 36 H 0.07 0.89 8.11 -51.93 -0.42 0.47 16 37 H 0.07 0.88 7.78 -51.93 -0.40 0.47 16 38 H 0.10 1.41 7.73 -52.49 -0.41 1.01 16 39 H 0.08 1.91 5.05 -51.93 -0.26 1.65 16 40 H 0.04 0.80 6.38 -51.93 -0.33 0.47 16 41 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 1.21 7.96 -51.93 -0.41 0.80 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.08 0.53 8.12 -51.93 -0.42 0.11 16 47 H 0.09 0.44 7.30 -51.93 -0.38 0.06 16 48 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 386.36 15.07 5.82 5.82 Total: -1.00 -35.25 386.36 -7.42 -42.67 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -7.57 Total: -0.99 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -2.58 Total: -3.77 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: 0.93 Total: -53.95 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: 0.09 Total: -7.27 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.11 Total: 17.49 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.25 -7.42 -42.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001086031.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.435 kcal (2) G-P(sol) polarization free energy of solvation -35.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds