Wall clock time and date at job start Wed Apr 1 2020 02:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 N 1.29101 * 126.00433 * 2 1 4 4 N 1.29027 * 110.25478 * 180.02562 * 3 2 1 5 5 C 1.32905 * 108.63520 * 0.03062 * 4 3 2 6 6 C 1.34395 * 126.00557 * 179.97438 * 2 1 3 7 7 C 1.50530 * 129.26025 * 359.78799 * 6 2 1 8 8 C 1.53434 * 108.32572 * 196.57731 * 7 6 2 9 9 H 1.08997 * 109.46261 * 70.27345 * 8 7 6 10 10 C 1.50704 * 109.45396 * 190.24039 * 8 7 6 11 11 O 1.21275 * 120.00128 * 0.03136 * 10 8 7 12 12 N 1.34776 * 119.99706 * 180.02562 * 10 8 7 13 13 C 1.46505 * 119.99884 * 179.97438 * 12 10 8 14 14 C 1.50698 * 109.47224 * 179.97438 * 13 12 10 15 15 C 1.29453 * 117.69084 * 95.00223 * 14 13 12 16 16 C 1.50332 * 123.64825 * 180.85930 * 15 14 13 17 17 N 1.47004 * 109.21892 * 348.99060 * 16 15 14 18 18 C 1.36935 * 121.37864 * 222.95959 * 17 16 15 19 19 H 1.07993 * 120.00446 * 155.96372 * 18 17 16 20 20 C 1.38814 * 119.99501 * 335.96604 * 18 17 16 21 21 N 1.31618 * 120.00190 * 344.50950 * 20 18 17 22 22 Si 1.86800 * 119.99878 * 164.51473 * 20 18 17 23 23 H 1.48500 * 109.47208 * 89.99580 * 22 20 18 24 24 H 1.48503 * 109.47067 * 209.99733 * 22 20 18 25 25 H 1.48500 * 109.46861 * 329.99738 * 22 20 18 26 26 C 1.47463 * 117.17385 * 42.91761 * 17 16 15 27 27 C 1.49970 * 117.69674 * 274.98165 * 14 13 12 28 28 C 1.53108 * 109.53623 * 310.25226 * 8 7 6 29 29 C 1.50601 * 129.16286 * 179.89586 * 5 4 3 30 30 H 1.09000 * 109.46823 * 90.02674 * 1 2 3 31 31 H 1.08997 * 109.47313 * 210.02748 * 1 2 3 32 32 H 1.09001 * 109.46950 * 330.02905 * 1 2 3 33 33 H 1.08996 * 109.70726 * 76.85618 * 7 6 2 34 34 H 1.09004 * 109.67809 * 316.27657 * 7 6 2 35 35 H 0.97000 * 120.00645 * 0.02562 * 12 10 8 36 36 H 1.09000 * 109.47003 * 60.00258 * 13 12 10 37 37 H 1.09000 * 109.47625 * 300.00339 * 13 12 10 38 38 H 1.07995 * 118.17769 * 0.88265 * 15 14 13 39 39 H 1.08997 * 109.52035 * 108.92971 * 16 15 14 40 40 H 1.08996 * 109.51770 * 229.05338 * 16 15 14 41 41 H 0.97001 * 119.99771 * 179.97438 * 21 20 18 42 42 H 1.09001 * 109.74721 * 178.65167 * 26 17 16 43 43 H 1.09006 * 109.82605 * 57.88953 * 26 17 16 44 44 H 1.08998 * 109.31119 * 281.28977 * 27 14 13 45 45 H 1.09001 * 109.31388 * 40.71584 * 27 14 13 46 46 H 1.09003 * 109.45254 * 190.11134 * 28 8 7 47 47 H 1.08998 * 109.45844 * 310.06776 * 28 8 7 48 48 H 1.09002 * 109.69224 * 76.75856 * 29 5 4 49 49 H 1.08997 * 109.69056 * 316.17895 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2240 1.0444 0.0000 4 7 3.4658 0.6942 -0.0005 5 6 3.5327 -0.6332 -0.0016 6 6 2.2552 -1.0872 0.0005 7 6 1.8723 -2.5430 0.0055 8 6 3.1009 -3.3635 0.4195 9 1 3.3125 -3.1932 1.4751 10 6 2.8263 -4.8278 0.1925 11 8 1.7565 -5.1818 -0.2558 12 7 3.7697 -5.7440 0.4877 13 6 3.5026 -7.1676 0.2676 14 6 4.7091 -7.9738 0.6740 15 6 4.7284 -8.4659 1.8712 16 6 5.8707 -9.2733 2.4216 17 7 6.7894 -9.6203 1.3277 18 6 7.3270 -10.8750 1.2189 19 1 7.6639 -11.2368 0.2588 20 6 7.4389 -11.6818 2.3429 21 7 7.3222 -11.1568 3.5442 22 14 7.7553 -13.5128 2.1505 23 1 9.2190 -13.7628 2.1309 24 1 7.1436 -14.2432 3.2896 25 1 7.1549 -13.9878 0.8781 26 6 7.1063 -8.5603 0.3527 27 6 5.8026 -8.1500 -0.3371 28 6 4.3087 -2.9353 -0.4184 29 6 4.7468 -1.5243 -0.0047 30 1 -0.3633 -0.0005 -1.0277 31 1 -0.3634 -0.8897 0.5142 32 1 -0.3633 0.8903 0.5134 33 1 1.5502 -2.8417 -0.9920 34 1 1.0637 -2.7075 0.7177 35 1 4.6253 -5.4610 0.8465 36 1 3.2906 -7.3385 -0.7879 37 1 2.6433 -7.4727 0.8647 38 1 3.8762 -8.2867 2.5100 39 1 6.4023 -8.6880 3.1719 40 1 5.4857 -10.1857 2.8771 41 1 7.4000 -11.7208 4.3296 42 1 7.8115 -8.9393 -0.3870 43 1 7.5376 -7.7016 0.8673 44 1 5.5134 -8.9220 -1.0500 45 1 5.9562 -7.2111 -0.8692 46 1 5.1300 -3.6330 -0.2545 47 1 4.0369 -2.9361 -1.4740 48 1 5.1841 -1.5528 0.9934 49 1 5.4796 -1.1442 -0.7165 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001086038.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:58 Heat of formation + Delta-G solvation = 91.561277 kcal Electronic energy + Delta-G solvation = -29756.635398 eV Core-core repulsion = 25721.363242 eV Total energy + Delta-G solvation = -4035.272155 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.71876 -40.20685 -37.96166 -36.89427 -35.27452 -35.01450 -32.99151 -31.20435 -30.94633 -30.51875 -29.75538 -28.22929 -27.12635 -25.08117 -23.97713 -23.44061 -22.76631 -21.75677 -21.18106 -20.80488 -19.81523 -17.96479 -17.62533 -17.29721 -16.80229 -16.23040 -15.68974 -15.59414 -15.04586 -14.98686 -14.29544 -14.24612 -14.20655 -14.11498 -13.87487 -13.69144 -13.57976 -13.42952 -13.22389 -12.96154 -12.52383 -12.39714 -12.30232 -12.11778 -11.86056 -11.61594 -11.51786 -11.43553 -11.35573 -10.96423 -10.87317 -10.76609 -10.46040 -10.36929 -10.29312 -9.96386 -9.88017 -9.65322 -9.16535 -9.06234 -8.73422 -8.12620 -6.80121 -5.84987 -3.23658 1.23469 1.96769 2.24265 2.48363 2.51100 3.33532 3.34852 3.41859 3.44038 3.82223 4.07248 4.20606 4.37448 4.40121 4.45083 4.50385 4.53950 4.77502 4.79987 4.88075 5.05704 5.07389 5.11142 5.20658 5.28479 5.34426 5.46538 5.50251 5.52253 5.62745 5.67978 5.75084 5.78212 5.86836 5.93595 6.00487 6.09989 6.22078 6.27029 6.36148 6.45941 6.67345 6.80661 7.09731 7.19044 7.25697 7.46748 7.67218 7.76632 8.10757 8.20587 8.32606 9.14205 9.76861 10.34684 11.25534 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.028534 B = 0.001866 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.046664 B =14999.655201 C =15377.172920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.284 5.284 3 N -0.099 5.099 4 N -0.261 5.261 5 C -0.020 4.020 6 C -0.016 4.016 7 C -0.023 4.023 8 C -0.103 4.103 9 H 0.106 0.894 10 C 0.518 3.482 11 O -0.546 6.546 12 N -0.716 5.716 13 C 0.157 3.843 14 C -0.168 4.168 15 C -0.123 4.123 16 C 0.193 3.807 17 N -0.595 5.595 18 C -0.246 4.246 19 H 0.069 0.931 20 C -0.001 4.001 21 N -0.910 5.910 22 Si 0.904 3.096 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.143 3.857 27 C -0.090 4.090 28 C -0.112 4.112 29 C -0.031 4.031 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.403 0.597 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.094 0.906 39 H 0.042 0.958 40 H 0.093 0.907 41 H 0.254 0.746 42 H 0.057 0.943 43 H 0.023 0.977 44 H 0.064 0.936 45 H 0.053 0.947 46 H 0.086 0.914 47 H 0.076 0.924 48 H 0.088 0.912 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.025 19.608 -6.194 23.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.076 5.076 3 N -0.077 5.077 4 N -0.126 5.126 5 C -0.160 4.160 6 C -0.151 4.151 7 C -0.063 4.063 8 C -0.125 4.125 9 H 0.124 0.876 10 C 0.303 3.697 11 O -0.424 6.424 12 N -0.367 5.367 13 C 0.035 3.965 14 C -0.168 4.168 15 C -0.144 4.144 16 C 0.068 3.932 17 N -0.318 5.318 18 C -0.375 4.375 19 H 0.086 0.914 20 C -0.199 4.199 21 N -0.555 5.555 22 Si 0.734 3.266 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.017 3.983 27 C -0.129 4.129 28 C -0.150 4.150 29 C -0.070 4.070 30 H 0.111 0.889 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.115 0.885 34 H 0.105 0.895 35 H 0.238 0.762 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.112 0.888 39 H 0.059 0.941 40 H 0.111 0.889 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.041 0.959 44 H 0.082 0.918 45 H 0.072 0.928 46 H 0.104 0.896 47 H 0.095 0.905 48 H 0.106 0.894 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.782 20.818 -6.367 25.245 hybrid contribution 0.126 -1.867 0.260 1.889 sum -12.656 18.951 -6.107 23.592 Atomic orbital electron populations 1.22304 0.72675 1.06032 1.05217 1.46827 1.09222 1.04583 1.46925 1.78594 0.96131 1.11263 1.21704 1.74804 1.09588 1.11962 1.16206 1.21711 0.95003 0.91376 1.07959 1.21823 0.91265 0.92259 1.09709 1.19903 0.97573 0.84586 1.04245 1.21336 0.96452 0.91768 1.02909 0.87612 1.20351 0.84139 0.87540 0.77660 1.90697 1.24693 1.81905 1.45133 1.46199 1.18081 1.07048 1.65395 1.20474 0.96438 0.78530 1.01103 1.20486 0.96789 1.02761 0.96789 1.23297 0.99547 0.96145 0.95373 1.19763 0.86559 0.97372 0.89496 1.44143 1.50850 1.08225 1.28603 1.19161 1.35645 0.89569 0.93159 0.91368 1.24990 1.00800 0.98911 0.95226 1.70002 1.54572 1.34106 0.96804 0.86260 0.77885 0.85265 0.77169 1.21407 1.21562 1.20526 1.20974 0.93200 0.91623 0.92522 1.20748 0.95819 0.99720 0.96581 1.21673 0.96653 0.96370 1.00325 1.19962 0.92557 0.91063 1.03455 0.88869 0.88156 0.87903 0.88465 0.89531 0.76235 0.91524 0.91651 0.88807 0.94065 0.88892 0.93579 0.92450 0.95878 0.91773 0.92833 0.89570 0.90535 0.89397 0.89146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.32 11.27 59.85 0.67 1.00 16 2 N -0.28 -2.56 3.73 -64.00 -0.24 -2.80 16 3 N -0.10 -1.20 13.19 60.35 0.80 -0.40 16 4 N -0.26 -3.39 12.40 33.16 0.41 -2.98 16 5 C -0.02 -0.21 7.11 -83.12 -0.59 -0.80 16 6 C -0.02 -0.15 6.76 -82.50 -0.56 -0.71 16 7 C -0.02 -0.18 4.71 -27.74 -0.13 -0.31 16 8 C -0.10 -0.79 2.50 -91.49 -0.23 -1.02 16 9 H 0.11 0.71 8.12 -51.93 -0.42 0.29 16 10 C 0.52 5.60 7.15 -10.98 -0.08 5.52 16 11 O -0.55 -7.83 15.82 5.56 0.09 -7.74 16 12 N -0.72 -7.71 5.37 -61.47 -0.33 -8.04 16 13 C 0.16 2.09 5.66 -5.19 -0.03 2.06 16 14 C -0.17 -2.62 5.22 -100.99 -0.53 -3.14 16 15 C -0.12 -2.17 9.47 -35.78 -0.34 -2.51 16 16 C 0.19 4.34 5.22 -5.10 -0.03 4.32 16 17 N -0.59 -14.21 3.01 -173.57 -0.52 -14.73 16 18 C -0.25 -6.53 9.71 -15.06 -0.15 -6.68 16 19 H 0.07 1.78 7.88 -52.49 -0.41 1.36 16 20 C 0.00 -0.04 5.01 -17.43 -0.09 -0.13 16 21 N -0.91 -25.50 11.08 55.49 0.61 -24.89 16 22 Si 0.90 21.23 29.58 -169.99 -5.03 16.20 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 C 0.14 2.77 6.58 -3.46 -0.02 2.75 16 27 C -0.09 -1.43 5.95 -28.19 -0.17 -1.60 16 28 C -0.11 -0.76 5.17 -26.45 -0.14 -0.89 16 29 C -0.03 -0.23 6.30 -27.71 -0.17 -0.41 16 30 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.10 0.23 7.71 -51.93 -0.40 -0.17 16 32 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.10 0.81 7.78 -51.93 -0.40 0.41 16 34 H 0.09 0.60 7.87 -51.93 -0.41 0.19 16 35 H 0.40 3.68 7.80 -40.82 -0.32 3.37 16 36 H 0.07 0.92 8.11 -51.93 -0.42 0.50 16 37 H 0.07 0.92 7.78 -51.93 -0.40 0.51 16 38 H 0.09 1.48 7.73 -52.49 -0.41 1.08 16 39 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.09 2.36 6.41 -51.93 -0.33 2.03 16 41 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 42 H 0.06 1.09 7.97 -51.93 -0.41 0.68 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.09 0.49 7.30 -51.93 -0.38 0.11 16 47 H 0.08 0.56 8.12 -51.93 -0.42 0.13 16 48 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 393.32 15.07 5.93 5.93 Total: -1.00 -33.72 393.32 -8.51 -42.24 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -7.66 Total: -0.22 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -2.57 Total: -2.56 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: 0.73 Total: -53.85 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: 0.09 Total: -7.74 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.72 -8.51 -42.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001086038.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.799 kcal (2) G-P(sol) polarization free energy of solvation -33.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds