Wall clock time and date at job start Wed Apr 1 2020 02:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 N 1.29101 * 126.00433 * 2 1 4 4 N 1.29027 * 110.25478 * 180.02562 * 3 2 1 5 5 C 1.32905 * 108.63520 * 0.03062 * 4 3 2 6 6 C 1.34395 * 126.00557 * 179.97438 * 2 1 3 7 7 C 1.50530 * 129.26025 * 359.78799 * 6 2 1 8 8 C 1.53434 * 108.32572 * 196.57731 * 7 6 2 9 9 H 1.08997 * 109.46261 * 70.27345 * 8 7 6 10 10 C 1.50704 * 109.45396 * 190.24039 * 8 7 6 11 11 O 1.21275 * 120.00128 * 0.03136 * 10 8 7 12 12 N 1.34776 * 119.99706 * 180.02562 * 10 8 7 13 13 C 1.46505 * 119.99884 * 179.97438 * 12 10 8 14 14 C 1.50698 * 109.47224 * 179.97438 * 13 12 10 15 15 C 1.29453 * 117.69084 * 95.00223 * 14 13 12 16 16 C 1.50332 * 123.64825 * 180.85930 * 15 14 13 17 17 N 1.47004 * 109.21892 * 348.99060 * 16 15 14 18 18 C 1.36935 * 121.37864 * 222.95959 * 17 16 15 19 19 H 1.07993 * 120.00446 * 155.96372 * 18 17 16 20 20 C 1.38814 * 119.99501 * 335.96604 * 18 17 16 21 21 N 1.31618 * 120.00190 * 344.50950 * 20 18 17 22 22 Si 1.86800 * 119.99878 * 164.51473 * 20 18 17 23 23 H 1.48500 * 109.47208 * 89.99580 * 22 20 18 24 24 H 1.48503 * 109.47067 * 209.99733 * 22 20 18 25 25 H 1.48500 * 109.46861 * 329.99738 * 22 20 18 26 26 C 1.47463 * 117.17385 * 42.91761 * 17 16 15 27 27 C 1.49970 * 117.69674 * 274.98165 * 14 13 12 28 28 C 1.53108 * 109.53623 * 310.25226 * 8 7 6 29 29 C 1.50601 * 129.16286 * 179.89586 * 5 4 3 30 30 H 1.09000 * 109.46823 * 90.02674 * 1 2 3 31 31 H 1.08997 * 109.47313 * 210.02748 * 1 2 3 32 32 H 1.09001 * 109.46950 * 330.02905 * 1 2 3 33 33 H 1.08996 * 109.70726 * 76.85618 * 7 6 2 34 34 H 1.09004 * 109.67809 * 316.27657 * 7 6 2 35 35 H 0.97000 * 120.00645 * 0.02562 * 12 10 8 36 36 H 1.09000 * 109.47003 * 60.00258 * 13 12 10 37 37 H 1.09000 * 109.47625 * 300.00339 * 13 12 10 38 38 H 1.07995 * 118.17769 * 0.88265 * 15 14 13 39 39 H 1.08997 * 109.52035 * 108.92971 * 16 15 14 40 40 H 1.08996 * 109.51770 * 229.05338 * 16 15 14 41 41 H 0.97001 * 119.99771 * 179.97438 * 21 20 18 42 42 H 1.09001 * 109.74721 * 178.65167 * 26 17 16 43 43 H 1.09006 * 109.82605 * 57.88953 * 26 17 16 44 44 H 1.08998 * 109.31119 * 281.28977 * 27 14 13 45 45 H 1.09001 * 109.31388 * 40.71584 * 27 14 13 46 46 H 1.09003 * 109.45254 * 190.11134 * 28 8 7 47 47 H 1.08998 * 109.45844 * 310.06776 * 28 8 7 48 48 H 1.09002 * 109.69224 * 76.75856 * 29 5 4 49 49 H 1.08997 * 109.69056 * 316.17895 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2240 1.0444 0.0000 4 7 3.4658 0.6942 -0.0005 5 6 3.5327 -0.6332 -0.0016 6 6 2.2552 -1.0872 0.0005 7 6 1.8723 -2.5430 0.0055 8 6 3.1009 -3.3635 0.4195 9 1 3.3125 -3.1932 1.4751 10 6 2.8263 -4.8278 0.1925 11 8 1.7565 -5.1818 -0.2558 12 7 3.7697 -5.7440 0.4877 13 6 3.5026 -7.1676 0.2676 14 6 4.7091 -7.9738 0.6740 15 6 4.7284 -8.4659 1.8712 16 6 5.8707 -9.2733 2.4216 17 7 6.7894 -9.6203 1.3277 18 6 7.3270 -10.8750 1.2189 19 1 7.6639 -11.2368 0.2588 20 6 7.4389 -11.6818 2.3429 21 7 7.3222 -11.1568 3.5442 22 14 7.7553 -13.5128 2.1505 23 1 9.2190 -13.7628 2.1309 24 1 7.1436 -14.2432 3.2896 25 1 7.1549 -13.9878 0.8781 26 6 7.1063 -8.5603 0.3527 27 6 5.8026 -8.1500 -0.3371 28 6 4.3087 -2.9353 -0.4184 29 6 4.7468 -1.5243 -0.0047 30 1 -0.3633 -0.0005 -1.0277 31 1 -0.3634 -0.8897 0.5142 32 1 -0.3633 0.8903 0.5134 33 1 1.5502 -2.8417 -0.9920 34 1 1.0637 -2.7075 0.7177 35 1 4.6253 -5.4610 0.8465 36 1 3.2906 -7.3385 -0.7879 37 1 2.6433 -7.4727 0.8647 38 1 3.8762 -8.2867 2.5100 39 1 6.4023 -8.6880 3.1719 40 1 5.4857 -10.1857 2.8771 41 1 7.4000 -11.7208 4.3296 42 1 7.8115 -8.9393 -0.3870 43 1 7.5376 -7.7016 0.8673 44 1 5.5134 -8.9220 -1.0500 45 1 5.9562 -7.2111 -0.8692 46 1 5.1300 -3.6330 -0.2545 47 1 4.0369 -2.9361 -1.4740 48 1 5.1841 -1.5528 0.9934 49 1 5.4796 -1.1442 -0.7165 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001086038.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:57 Heat of formation + Delta-G solvation = 69.402256 kcal Electronic energy + Delta-G solvation = -29757.596285 eV Core-core repulsion = 25721.363242 eV Total energy + Delta-G solvation = -4036.233043 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.43079 -41.08388 -39.37581 -37.65104 -36.38156 -35.86157 -34.50997 -32.67544 -31.55882 -31.49449 -31.25379 -28.78268 -28.51057 -26.32374 -25.05919 -24.38120 -24.10963 -22.76601 -22.39063 -21.62894 -20.53114 -19.46438 -18.63479 -17.95985 -17.62756 -17.27536 -17.11345 -16.86663 -16.32036 -15.81426 -15.60611 -15.34487 -15.18658 -14.90773 -14.85209 -14.78594 -14.61556 -14.25827 -14.12001 -13.89789 -13.64830 -13.52939 -13.23509 -13.11985 -13.04686 -12.84823 -12.77558 -12.59199 -12.55160 -12.22256 -12.14626 -12.05885 -11.94051 -11.67515 -11.55410 -11.22902 -10.95521 -10.84818 -10.66068 -10.03148 -9.86710 -9.59759 -8.72054 -7.86934 -5.27314 0.53856 1.22119 1.45823 1.47617 1.47743 1.49480 1.58374 1.65821 2.41710 2.52502 3.18742 3.30482 3.44845 3.66601 3.72294 3.77218 3.79785 3.90664 3.97732 4.02821 4.16207 4.24817 4.30098 4.45320 4.49895 4.51785 4.57887 4.58541 4.67265 4.71963 4.81680 4.88927 4.91413 4.93319 4.97364 5.04767 5.10437 5.15503 5.22523 5.26072 5.33494 5.41571 5.47903 5.52976 5.62049 5.63746 5.81911 6.21775 6.35989 6.61411 7.15843 7.27107 7.45120 7.86427 8.39531 9.21443 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.028534 B = 0.001866 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.046664 B =14999.655201 C =15377.172920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.277 5.277 3 N -0.131 5.131 4 N -0.301 5.301 5 C -0.033 4.033 6 C -0.014 4.014 7 C -0.017 4.017 8 C -0.094 4.094 9 H 0.123 0.877 10 C 0.523 3.477 11 O -0.580 6.580 12 N -0.710 5.710 13 C 0.168 3.832 14 C -0.137 4.137 15 C -0.143 4.143 16 C 0.204 3.796 17 N -0.616 5.616 18 C -0.254 4.254 19 H 0.069 0.931 20 C -0.055 4.055 21 N -0.939 5.939 22 Si 0.965 3.035 23 H -0.285 1.285 24 H -0.294 1.294 25 H -0.272 1.272 26 C 0.137 3.863 27 C -0.084 4.084 28 C -0.105 4.105 29 C -0.029 4.029 30 H 0.109 0.891 31 H 0.121 0.879 32 H 0.113 0.887 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.414 0.586 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.113 0.887 39 H 0.014 0.986 40 H 0.054 0.946 41 H 0.249 0.751 42 H 0.057 0.943 43 H 0.030 0.970 44 H 0.061 0.939 45 H 0.093 0.907 46 H 0.103 0.897 47 H 0.072 0.928 48 H 0.099 0.901 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.881 20.165 -7.494 25.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.070 5.070 3 N -0.108 5.108 4 N -0.164 5.164 5 C -0.175 4.175 6 C -0.149 4.149 7 C -0.057 4.057 8 C -0.116 4.116 9 H 0.141 0.859 10 C 0.311 3.689 11 O -0.460 6.460 12 N -0.361 5.361 13 C 0.044 3.956 14 C -0.138 4.138 15 C -0.164 4.164 16 C 0.079 3.921 17 N -0.340 5.340 18 C -0.384 4.384 19 H 0.087 0.913 20 C -0.250 4.250 21 N -0.586 5.586 22 Si 0.794 3.206 23 H -0.212 1.212 24 H -0.221 1.221 25 H -0.197 1.197 26 C 0.012 3.988 27 C -0.122 4.122 28 C -0.143 4.143 29 C -0.068 4.068 30 H 0.127 0.873 31 H 0.140 0.860 32 H 0.132 0.868 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.251 0.749 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.130 0.870 39 H 0.032 0.968 40 H 0.072 0.928 41 H 0.058 0.942 42 H 0.075 0.925 43 H 0.048 0.952 44 H 0.079 0.921 45 H 0.111 0.889 46 H 0.121 0.879 47 H 0.091 0.909 48 H 0.117 0.883 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.638 21.427 -7.690 26.537 hybrid contribution 0.364 -1.987 0.585 2.103 sum -13.273 19.439 -7.105 24.588 Atomic orbital electron populations 1.22745 0.70155 1.07690 1.06782 1.47209 1.10671 1.03935 1.45171 1.78507 0.96419 1.12515 1.23381 1.74747 1.10345 1.13553 1.17762 1.22262 0.96595 0.90945 1.07657 1.22036 0.91018 0.92807 1.09087 1.19894 0.97946 0.83476 1.04373 1.21306 0.96829 0.89339 1.04124 0.85945 1.20739 0.83280 0.88445 0.76484 1.90695 1.26113 1.82571 1.46648 1.46027 1.18765 1.05921 1.65386 1.20211 0.94724 0.79573 1.01056 1.20614 0.97011 1.00724 0.95439 1.22930 0.98933 0.97551 0.96965 1.19400 0.87669 0.96033 0.89026 1.44435 1.51320 1.08647 1.29588 1.19487 1.34806 0.91030 0.93116 0.91278 1.25714 1.01605 1.02591 0.95093 1.70159 1.56134 1.35047 0.97226 0.85301 0.77566 0.80771 0.76977 1.21196 1.22068 1.19724 1.21183 0.95230 0.90607 0.91778 1.20690 0.93786 1.01462 0.96301 1.21646 0.96664 0.96185 0.99812 1.20053 0.91656 0.90778 1.04288 0.87310 0.86027 0.86830 0.88834 0.88454 0.74933 0.91212 0.92053 0.86958 0.96840 0.92765 0.94185 0.92462 0.95169 0.92075 0.88889 0.87860 0.90933 0.88255 0.88798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.41 11.27 127.77 1.44 1.85 16 2 N -0.28 -4.65 3.73 -356.40 -1.33 -5.98 16 3 N -0.13 -3.13 13.19 37.02 0.49 -2.64 16 4 N -0.30 -7.73 12.40 -48.99 -0.61 -8.34 16 5 C -0.03 -0.65 7.11 41.75 0.30 -0.35 16 6 C -0.01 -0.23 6.76 41.50 0.28 0.05 16 7 C -0.02 -0.22 4.71 29.94 0.14 -0.08 16 8 C -0.09 -1.15 2.50 -11.36 -0.03 -1.18 16 9 H 0.12 1.17 8.12 -2.39 -0.02 1.15 16 10 C 0.52 9.60 7.15 87.66 0.63 10.23 16 11 O -0.58 -15.04 15.82 -3.01 -0.05 -15.09 16 12 N -0.71 -12.69 5.37 -466.78 -2.50 -15.19 16 13 C 0.17 3.92 5.66 85.63 0.48 4.40 16 14 C -0.14 -3.93 5.22 -15.14 -0.08 -4.01 16 15 C -0.14 -4.92 9.47 27.11 0.26 -4.66 16 16 C 0.20 9.39 5.22 85.42 0.45 9.83 16 17 N -0.62 -29.54 3.01 -703.07 -2.12 -31.66 16 18 C -0.25 -13.61 9.71 84.03 0.82 -12.80 16 19 H 0.07 3.59 7.88 -2.91 -0.02 3.57 16 20 C -0.06 -3.03 5.01 84.86 0.43 -2.61 16 21 N -0.94 -54.30 11.08 21.65 0.24 -54.06 16 22 Si 0.97 44.24 29.58 68.60 2.03 46.27 16 23 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 24 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 25 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 26 C 0.14 5.10 6.58 86.23 0.57 5.66 16 27 C -0.08 -2.42 5.95 29.65 0.18 -2.24 16 28 C -0.10 -1.08 5.17 30.77 0.16 -0.92 16 29 C -0.03 -0.36 6.30 29.96 0.19 -0.17 16 30 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.12 0.23 7.71 -2.39 -0.02 0.21 16 32 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.09 1.34 7.78 -2.39 -0.02 1.32 16 34 H 0.10 1.07 7.87 -2.39 -0.02 1.05 16 35 H 0.41 5.84 7.80 -92.71 -0.72 5.12 16 36 H 0.07 1.66 8.11 -2.39 -0.02 1.64 16 37 H 0.06 1.54 7.78 -2.39 -0.02 1.52 16 38 H 0.11 3.41 7.73 -2.91 -0.02 3.39 16 39 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.05 2.88 6.41 -2.39 -0.02 2.86 16 41 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 42 H 0.06 2.10 7.97 -2.39 -0.02 2.08 16 43 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 44 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.10 0.74 7.30 -2.39 -0.02 0.72 16 47 H 0.07 0.84 8.12 -2.39 -0.02 0.82 16 48 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 49 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -75.41 393.32 2.59 -72.82 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 0.24 Total: 10.88 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: 6.20 Total: 2.99 kcal Atomic # 7 Polarization: -112.05 SS G_CDS: -5.83 Total: -117.88 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.05 Total: -15.09 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -75.41 2.59 -72.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001086038.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.225 kcal (2) G-P(sol) polarization free energy of solvation -75.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds