Wall clock time and date at job start Wed Apr 1 2020 03:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86793 * 120.00143 * 2 1 4 4 H 1.48506 * 109.47349 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47029 * 299.99460 * 3 2 1 6 6 H 1.48501 * 109.47366 * 59.99779 * 3 2 1 7 7 C 1.38818 * 120.00001 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00158 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99681 * 359.97438 * 7 2 1 10 10 C 1.47426 * 125.65283 * 345.38730 * 9 7 2 11 11 C 1.54907 * 104.83494 * 204.14858 * 10 9 7 12 12 C 1.55162 * 101.57751 * 322.98673 * 11 10 9 13 13 C 1.47021 * 125.64820 * 165.40412 * 9 7 2 14 14 H 1.09002 * 110.00662 * 59.43686 * 13 9 7 15 15 C 1.53001 * 109.88369 * 298.34601 * 13 9 7 16 16 C 1.53046 * 109.45755 * 183.42543 * 15 13 9 17 17 C 1.53191 * 109.30958 * 181.36722 * 16 15 13 18 18 N 1.46919 * 108.77893 * 305.36371 * 17 16 15 19 19 C 1.34777 * 120.63257 * 233.58559 * 18 17 16 20 20 O 1.21279 * 120.00094 * 359.97438 * 19 18 17 21 21 C 1.50704 * 119.99835 * 179.97438 * 19 18 17 22 22 C 1.53009 * 109.46839 * 180.02562 * 21 19 18 23 23 N 1.46500 * 109.46776 * 180.02562 * 22 21 19 24 24 C 1.36346 * 125.63508 * 270.26043 * 23 22 21 25 25 C 1.34842 * 108.22001 * 180.14899 * 24 23 22 26 26 C 1.40899 * 107.41596 * 359.63692 * 25 24 23 27 27 C 1.34849 * 107.41689 * 0.22664 * 26 25 24 28 28 C 1.46936 * 118.73800 * 53.85842 * 18 17 16 29 29 C 1.53040 * 109.44594 * 303.47942 * 15 13 9 30 30 H 0.97004 * 119.99815 * 0.02562 * 1 2 3 31 31 H 1.09004 * 110.36596 * 85.30604 * 10 9 7 32 32 H 1.08997 * 110.45937 * 323.03206 * 10 9 7 33 33 H 1.09003 * 111.00377 * 204.91586 * 11 10 9 34 34 H 1.08993 * 111.00908 * 81.05775 * 11 10 9 35 35 H 1.09000 * 110.72470 * 277.13666 * 12 11 10 36 36 H 1.09004 * 110.86976 * 153.93735 * 12 11 10 37 37 H 1.08994 * 109.46313 * 63.44788 * 15 13 9 38 38 H 1.08997 * 109.50167 * 61.41561 * 16 15 13 39 39 H 1.08996 * 109.49933 * 301.31859 * 16 15 13 40 40 H 1.08996 * 109.58759 * 185.57381 * 17 16 15 41 41 H 1.09010 * 109.70462 * 65.22395 * 17 16 15 42 42 H 1.09002 * 109.47028 * 60.00580 * 21 19 18 43 43 H 1.08995 * 109.47611 * 300.00057 * 21 19 18 44 44 H 1.08999 * 109.46596 * 59.99985 * 22 21 19 45 45 H 1.09001 * 109.47101 * 299.99966 * 22 21 19 46 46 H 1.08004 * 125.88522 * 0.02562 * 24 23 22 47 47 H 1.07996 * 126.29194 * 179.89543 * 25 24 23 48 48 H 1.07996 * 126.28765 * 180.26548 * 26 25 24 49 49 H 1.07990 * 125.89002 * 180.02562 * 27 26 25 50 50 H 1.09002 * 109.58053 * 65.93311 * 28 18 17 51 51 H 1.09003 * 109.58523 * 186.35306 * 28 18 17 52 52 H 1.08994 * 109.50235 * 298.57390 * 29 15 13 53 53 H 1.09000 * 109.49690 * 58.67696 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 -0.1079 -2.5524 0.3045 11 6 -0.2474 -4.0205 0.7787 12 6 0.7645 -4.7446 -0.1483 13 6 1.8981 -3.7084 -0.2988 14 1 2.7022 -3.9343 0.4017 15 6 2.4352 -3.7290 -1.7313 16 6 2.9511 -5.1314 -2.0623 17 6 3.5191 -5.1395 -3.4850 18 7 2.4900 -4.6418 -4.4079 19 6 2.1291 -5.3631 -5.4877 20 8 2.6555 -6.4338 -5.7053 21 6 1.0715 -4.8391 -6.4247 22 6 0.8516 -5.8431 -7.5582 23 7 -0.1761 -5.3335 -8.4694 24 6 -1.5164 -5.5587 -8.3608 25 6 -2.1335 -4.9311 -9.3824 26 6 -1.1384 -4.2881 -10.1451 27 6 0.0492 -4.5515 -9.5633 28 6 1.8661 -3.3398 -4.1347 29 6 1.3127 -3.3545 -2.7017 30 1 -0.4850 0.8401 -0.0004 31 1 -0.7065 -2.3844 -0.5909 32 1 -0.4109 -1.8676 1.0965 33 1 -1.2600 -4.3893 0.6154 34 1 0.0397 -4.1220 1.8252 35 1 0.3124 -4.9648 -1.1154 36 1 1.1353 -5.6568 0.3191 37 1 3.2500 -3.0111 -1.8240 38 1 2.1311 -5.8463 -1.9938 39 1 3.7344 -5.4069 -1.3562 40 1 3.7970 -6.1565 -3.7616 41 1 4.3967 -4.4948 -3.5340 42 1 1.3955 -3.8854 -6.8414 43 1 0.1390 -4.6988 -5.8782 44 1 0.5275 -6.7966 -7.1411 45 1 1.7840 -5.9839 -8.1049 46 1 -2.0002 -6.1411 -7.5906 47 1 -3.1956 -4.9197 -9.5776 48 1 -1.2978 -3.6932 -11.0322 49 1 1.0126 -4.2028 -9.9047 50 1 2.6107 -2.5499 -4.2339 51 1 1.0530 -3.1691 -4.8403 52 1 0.5082 -4.0860 -2.6273 53 1 0.9299 -2.3652 -2.4508 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004585729.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:06 Heat of formation + Delta-G solvation = 22.559198 kcal Electronic energy + Delta-G solvation = -31255.532383 eV Core-core repulsion = 27320.808416 eV Total energy + Delta-G solvation = -3934.723967 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.05127 -41.31999 -39.90522 -37.74668 -35.10419 -34.71168 -33.74295 -32.15317 -31.15614 -30.59217 -29.62747 -29.02231 -26.55772 -25.83787 -24.75873 -23.95818 -22.52913 -21.76915 -21.33454 -20.85897 -20.53162 -19.54072 -18.81894 -18.42955 -17.48787 -17.11226 -16.83659 -16.75039 -16.32717 -15.70671 -15.54760 -15.30562 -15.25871 -14.93041 -14.57010 -14.34873 -14.12867 -13.92282 -13.85328 -13.75055 -13.54302 -13.38509 -13.14226 -13.02865 -12.95030 -12.86153 -12.78959 -12.78189 -12.61530 -12.28033 -12.14901 -11.96919 -11.82549 -11.78980 -11.49378 -11.25063 -11.16021 -11.00410 -10.82385 -10.60242 -9.68086 -9.52139 -9.03861 -8.69834 -7.79917 -5.14151 1.36584 1.46139 1.48432 1.51382 1.56576 1.81526 2.18054 2.23111 2.52874 3.38998 3.47540 3.67745 3.70731 3.73513 3.86228 3.95647 4.16032 4.18080 4.23361 4.24715 4.26479 4.33237 4.36416 4.40827 4.41712 4.43914 4.55925 4.65060 4.75275 4.79932 4.81085 4.82070 4.83023 4.89912 4.93894 5.06783 5.09884 5.11539 5.20667 5.27301 5.37132 5.42925 5.45981 5.54730 5.56544 5.65400 5.71783 5.74544 5.84841 6.12152 6.31608 6.35395 6.36174 6.51440 7.05199 7.18466 7.87660 8.55692 9.31192 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.010967 B = 0.002761 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.578125 B =10138.169196 C =10975.702974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.057 4.057 3 Si 0.962 3.038 4 H -0.269 1.269 5 H -0.294 1.294 6 H -0.299 1.299 7 C -0.221 4.221 8 H 0.072 0.928 9 N -0.607 5.607 10 C 0.181 3.819 11 C -0.140 4.140 12 C -0.114 4.114 13 C 0.157 3.843 14 H 0.026 0.974 15 C -0.083 4.083 16 C -0.116 4.116 17 C 0.113 3.887 18 N -0.603 5.603 19 C 0.522 3.478 20 O -0.579 6.579 21 C -0.148 4.148 22 C 0.128 3.872 23 N -0.450 5.450 24 C -0.025 4.025 25 C -0.223 4.223 26 C -0.223 4.223 27 C -0.024 4.024 28 C 0.113 3.887 29 C -0.107 4.107 30 H 0.244 0.756 31 H -0.001 1.001 32 H 0.026 0.974 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.048 0.952 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.071 0.929 42 H 0.111 0.889 43 H 0.108 0.892 44 H 0.097 0.903 45 H 0.099 0.901 46 H 0.176 0.824 47 H 0.142 0.858 48 H 0.143 0.857 49 H 0.178 0.822 50 H 0.070 0.930 51 H 0.098 0.902 52 H 0.060 0.940 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.326 -12.535 -13.662 18.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.251 4.251 3 Si 0.792 3.208 4 H -0.193 1.193 5 H -0.221 1.221 6 H -0.227 1.227 7 C -0.350 4.350 8 H 0.090 0.910 9 N -0.331 5.331 10 C 0.056 3.944 11 C -0.178 4.178 12 C -0.151 4.151 13 C 0.051 3.949 14 H 0.044 0.956 15 C -0.103 4.103 16 C -0.155 4.155 17 C -0.009 4.009 18 N -0.335 5.335 19 C 0.311 3.689 20 O -0.460 6.460 21 C -0.189 4.189 22 C 0.006 3.994 23 N -0.126 5.126 24 C -0.155 4.155 25 C -0.247 4.247 26 C -0.247 4.247 27 C -0.154 4.154 28 C -0.009 4.009 29 C -0.146 4.146 30 H 0.053 0.947 31 H 0.017 0.983 32 H 0.045 0.955 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.066 0.934 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.106 0.894 41 H 0.089 0.911 42 H 0.129 0.871 43 H 0.126 0.874 44 H 0.115 0.885 45 H 0.117 0.883 46 H 0.193 0.807 47 H 0.160 0.840 48 H 0.161 0.839 49 H 0.195 0.805 50 H 0.088 0.912 51 H 0.116 0.884 52 H 0.079 0.921 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.847 -13.006 -13.516 18.848 hybrid contribution 0.152 1.645 0.367 1.693 sum 1.999 -11.360 -13.148 17.491 Atomic orbital electron populations 1.70133 1.06056 1.24798 1.58350 1.25494 0.96284 1.00302 1.03018 0.85254 0.78383 0.80738 0.76459 1.19336 1.22102 1.22650 1.19199 0.90404 0.83520 1.41893 0.91015 1.44669 1.06219 1.02082 1.80145 1.21136 0.84894 0.92229 0.96154 1.22898 0.99433 0.96532 0.98974 1.22598 0.95637 0.97184 0.99699 1.21150 0.94655 0.85514 0.93566 0.95598 1.21389 0.97153 0.95996 0.95797 1.21881 1.01372 0.96542 0.95660 1.21626 0.89933 1.00722 0.88591 1.48215 1.39845 1.20608 1.24803 1.20653 0.83039 0.83865 0.81392 1.90678 1.57350 1.23302 1.74688 1.21991 0.99203 1.01396 0.96275 1.21500 0.91376 0.96749 0.89756 1.44296 1.06574 1.39894 1.21851 1.22227 0.82795 1.07137 1.03338 1.21194 0.99839 1.05129 0.98543 1.21195 0.92662 1.07292 1.03553 1.22238 1.00729 1.01000 0.91398 1.21923 0.98033 0.83649 0.97343 1.21742 0.97815 1.01644 0.93359 0.94688 0.98318 0.95537 0.90462 0.92301 0.90867 0.89858 0.93356 0.91322 0.89836 0.89410 0.91110 0.87085 0.87417 0.88496 0.88287 0.80697 0.84033 0.83935 0.80452 0.91210 0.88379 0.92145 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.30 10.58 21.65 0.23 -54.07 16 2 C -0.06 -3.11 5.47 84.86 0.46 -2.64 16 3 Si 0.96 44.25 29.55 68.60 2.03 46.28 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 6 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 7 C -0.22 -11.49 9.87 84.04 0.83 -10.66 16 8 H 0.07 3.67 7.83 -2.91 -0.02 3.65 16 9 N -0.61 -28.31 2.21 -668.27 -1.48 -29.79 16 10 C 0.18 8.41 5.41 86.85 0.47 8.88 16 11 C -0.14 -4.86 7.09 31.99 0.23 -4.63 16 12 C -0.11 -3.44 5.20 31.78 0.17 -3.27 16 13 C 0.16 5.70 2.97 45.34 0.13 5.83 16 14 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 15 C -0.08 -2.57 1.91 -10.76 -0.02 -2.59 16 16 C -0.12 -2.78 5.08 30.67 0.16 -2.62 16 17 C 0.11 2.61 6.43 86.36 0.56 3.17 16 18 N -0.60 -13.95 2.97 -818.05 -2.43 -16.38 16 19 C 0.52 11.84 7.70 87.66 0.67 12.52 16 20 O -0.58 -16.33 15.40 -3.03 -0.05 -16.38 16 21 C -0.15 -2.51 4.37 29.85 0.13 -2.38 16 22 C 0.13 2.12 5.38 86.38 0.46 2.59 16 23 N -0.45 -8.28 2.75 -524.47 -1.44 -9.72 16 24 C -0.03 -0.48 11.43 83.21 0.95 0.47 16 25 C -0.22 -4.49 10.86 22.14 0.24 -4.25 16 26 C -0.22 -4.41 10.86 22.14 0.24 -4.17 16 27 C -0.02 -0.44 11.43 83.21 0.95 0.51 16 28 C 0.11 2.72 6.37 86.50 0.55 3.27 16 29 C -0.11 -3.33 4.95 30.82 0.15 -3.17 16 30 H 0.24 13.81 8.31 -92.71 -0.77 13.04 16 31 H 0.00 -0.06 8.06 -2.38 -0.02 -0.08 16 32 H 0.03 1.42 6.93 -2.39 -0.02 1.41 16 33 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.07 2.11 5.50 -2.39 -0.01 2.10 16 36 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.05 1.69 8.07 -2.39 -0.02 1.67 16 38 H 0.07 1.62 7.02 -2.39 -0.02 1.61 16 39 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.09 2.07 7.01 -2.39 -0.02 2.05 16 41 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 42 H 0.11 1.68 7.93 -2.39 -0.02 1.66 16 43 H 0.11 1.76 7.70 -2.39 -0.02 1.74 16 44 H 0.10 1.63 8.10 -2.39 -0.02 1.61 16 45 H 0.10 1.61 8.10 -2.39 -0.02 1.59 16 46 H 0.18 2.57 8.06 -2.91 -0.02 2.54 16 47 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 48 H 0.14 2.39 8.06 -2.91 -0.02 2.36 16 49 H 0.18 2.38 8.06 -2.92 -0.02 2.36 16 50 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 51 H 0.10 1.99 5.93 -2.39 -0.01 1.97 16 52 H 0.06 1.82 6.20 -2.39 -0.01 1.80 16 53 H 0.05 2.23 7.49 -2.39 -0.02 2.21 16 Total: -1.00 -65.34 406.95 5.07 -60.27 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 0.87 Total: 22.96 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: 7.34 Total: -3.17 kcal Atomic # 7 Polarization: -104.84 SS G_CDS: -5.12 Total: -109.96 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.05 Total: -16.38 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -65.34 5.07 -60.27 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004585729.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.827 kcal (2) G-P(sol) polarization free energy of solvation -65.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds