Wall clock time and date at job start Wed Apr 1 2020 03:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 120.00288 * 2 1 4 4 H 1.48505 * 109.47053 * 233.66589 * 3 2 1 5 5 H 1.48504 * 109.47047 * 353.66151 * 3 2 1 6 6 H 1.48496 * 109.47176 * 113.66658 * 3 2 1 7 7 C 1.38814 * 119.99602 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00321 * 354.02089 * 7 2 1 9 9 N 1.36939 * 119.99987 * 174.02078 * 7 2 1 10 10 C 1.47424 * 125.64660 * 32.76767 * 9 7 2 11 11 C 1.54915 * 104.83466 * 155.83367 * 10 9 7 12 12 C 1.55157 * 101.57494 * 37.00867 * 11 10 9 13 13 C 1.47018 * 125.65036 * 212.72283 * 9 7 2 14 14 H 1.08999 * 109.88358 * 300.67043 * 13 9 7 15 15 C 1.53001 * 109.88146 * 61.67899 * 13 9 7 16 16 C 1.53038 * 109.45967 * 293.97705 * 15 13 9 17 17 C 1.53188 * 109.31402 * 178.61466 * 16 15 13 18 18 N 1.46929 * 108.77772 * 54.63095 * 17 16 15 19 19 C 1.34774 * 120.63110 * 126.36759 * 18 17 16 20 20 O 1.21283 * 120.00263 * 0.02562 * 19 18 17 21 21 C 1.50697 * 120.00036 * 180.02562 * 19 18 17 22 22 C 1.53003 * 109.47136 * 180.02562 * 21 19 18 23 23 N 1.46507 * 109.47204 * 180.02562 * 22 21 19 24 24 C 1.36332 * 125.63704 * 270.26587 * 23 22 21 25 25 C 1.34854 * 108.22051 * 180.14381 * 24 23 22 26 26 C 1.40893 * 107.41271 * 359.63583 * 25 24 23 27 27 C 1.34850 * 107.41655 * 0.22471 * 26 25 24 28 28 C 1.46928 * 118.73983 * 306.64847 * 18 17 16 29 29 C 1.52761 * 109.00789 * 53.30475 * 28 18 17 30 30 H 0.97001 * 119.99376 * 0.02562 * 1 2 3 31 31 H 1.09001 * 110.36801 * 274.67264 * 10 9 7 32 32 H 1.09008 * 110.36812 * 36.88630 * 10 9 7 33 33 H 1.08997 * 111.00316 * 155.08023 * 11 10 9 34 34 H 1.08993 * 111.00197 * 278.90089 * 11 10 9 35 35 H 1.08998 * 110.72009 * 206.13562 * 12 11 10 36 36 H 1.09001 * 110.72083 * 82.86283 * 12 11 10 37 37 H 1.09004 * 109.45935 * 53.94615 * 15 13 9 38 38 H 1.08998 * 109.50181 * 58.66073 * 16 15 13 39 39 H 1.09004 * 109.49581 * 298.56557 * 16 15 13 40 40 H 1.09005 * 109.58814 * 294.84777 * 17 16 15 41 41 H 1.09004 * 109.70891 * 174.49195 * 17 16 15 42 42 H 1.09000 * 109.47296 * 60.00330 * 21 19 18 43 43 H 1.08994 * 109.47555 * 300.00250 * 21 19 18 44 44 H 1.09004 * 109.47414 * 59.99984 * 22 21 19 45 45 H 1.09004 * 109.47363 * 300.00039 * 22 21 19 46 46 H 1.08007 * 125.89356 * 359.97438 * 24 23 22 47 47 H 1.07992 * 126.29425 * 179.89574 * 25 24 23 48 48 H 1.08004 * 126.28835 * 180.26540 * 26 25 24 49 49 H 1.08003 * 125.88326 * 180.02562 * 27 26 25 50 50 H 1.08995 * 109.58945 * 173.14157 * 28 18 17 51 51 H 1.09002 * 109.58210 * 293.56442 * 28 18 17 52 52 H 1.08997 * 109.56564 * 185.55771 * 29 28 18 53 53 H 1.09001 * 109.35916 * 65.50024 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.2162 1.6315 -1.1279 5 1 1.2927 2.7422 -0.1546 6 1 2.9845 1.7653 1.2823 7 6 2.0102 -1.2022 0.0005 8 1 1.4746 -2.1349 0.0984 9 7 3.3740 -1.2056 -0.1230 10 6 4.2859 -0.1677 0.3914 11 6 5.6468 -0.8867 0.5664 12 6 5.6547 -1.8404 -0.6575 13 6 4.1714 -2.2453 -0.7898 14 1 4.0031 -3.2080 -0.3073 15 6 3.7849 -2.3296 -2.2678 16 6 2.3416 -2.8237 -2.3899 17 6 1.9468 -2.8739 -3.8692 18 7 2.9283 -3.6931 -4.5932 19 6 2.5286 -4.7310 -5.3543 20 8 1.3487 -4.9961 -5.4470 21 6 3.5476 -5.5621 -6.0904 22 6 2.8352 -6.6664 -6.8739 23 7 3.8259 -7.4748 -7.5890 24 6 4.2849 -7.2362 -8.8503 25 6 5.1812 -8.1946 -9.1613 26 6 5.2852 -9.0518 -8.0479 27 6 4.4449 -8.5873 -7.1010 28 6 4.3545 -3.3632 -4.4666 29 6 4.7220 -3.3041 -2.9850 30 1 -0.4849 0.8401 -0.0004 31 1 4.3769 0.6472 -0.3268 32 1 3.9287 0.2102 1.3495 33 1 6.4729 -0.1775 0.5144 34 1 5.6748 -1.4482 1.5001 35 1 6.2768 -2.7137 -0.4618 36 1 5.9929 -1.3172 -1.5519 37 1 3.8705 -1.3426 -2.7224 38 1 1.6774 -2.1417 -1.8590 39 1 2.2607 -3.8211 -1.9577 40 1 1.9396 -1.8642 -4.2799 41 1 0.9558 -3.3165 -3.9703 42 1 4.2363 -6.0107 -5.3743 43 1 4.1035 -4.9280 -6.7808 44 1 2.1467 -6.2176 -7.5900 45 1 2.2789 -7.3008 -6.1838 46 1 3.9811 -6.4216 -9.4912 47 1 5.7229 -8.2858 -10.0910 48 1 5.9215 -9.9207 -7.9675 49 1 4.2895 -9.0215 -6.1244 50 1 4.9521 -4.1299 -4.9596 51 1 4.5476 -2.3943 -4.9271 52 1 5.7519 -2.9640 -2.8777 53 1 4.6186 -4.2970 -2.5473 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004585730.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:09 Heat of formation + Delta-G solvation = 23.213550 kcal Electronic energy + Delta-G solvation = -31085.991744 eV Core-core repulsion = 27151.296152 eV Total energy + Delta-G solvation = -3934.695592 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.04031 -41.29416 -39.96684 -37.93907 -35.09054 -34.72039 -34.11620 -32.41134 -31.60276 -30.52206 -29.60729 -29.34961 -26.44032 -25.92434 -24.82221 -24.00921 -22.44840 -21.72778 -21.31183 -20.80722 -20.65993 -19.93588 -18.89483 -18.71550 -17.54381 -17.25724 -16.99489 -16.86142 -16.63137 -15.57236 -15.42162 -15.28172 -15.09280 -14.94172 -14.64430 -14.48276 -14.35559 -14.27721 -14.13675 -13.86132 -13.77669 -13.40569 -13.20327 -13.11260 -12.96634 -12.86263 -12.75083 -12.69104 -12.59690 -12.27369 -12.15121 -12.09914 -11.97632 -11.74775 -11.49169 -11.38344 -11.13679 -10.97654 -10.90467 -10.57680 -9.66320 -9.50718 -9.02109 -8.75560 -8.12406 -5.50792 1.31774 1.34293 1.38685 1.45098 1.53167 1.80066 2.20159 2.25039 2.41759 3.13454 3.34437 3.49683 3.72232 3.74056 3.85732 3.95262 3.97826 4.10816 4.19508 4.23561 4.27665 4.28730 4.34159 4.43154 4.44178 4.45974 4.54034 4.61379 4.73565 4.75360 4.77558 4.81582 4.83008 4.83913 4.86103 4.96676 5.01590 5.08622 5.10552 5.19082 5.29922 5.35946 5.38039 5.45169 5.48086 5.48567 5.69109 5.77471 5.92802 6.14501 6.17923 6.38555 6.41083 6.52016 6.86416 7.08093 7.59841 8.23531 9.06056 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.019087 B = 0.002409 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.601865 B =11618.247382 C =12534.531147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.037 4.037 3 Si 0.961 3.039 4 H -0.262 1.262 5 H -0.321 1.321 6 H -0.269 1.269 7 C -0.210 4.210 8 H 0.051 0.949 9 N -0.625 5.625 10 C 0.081 3.919 11 C -0.122 4.122 12 C -0.113 4.113 13 C 0.160 3.840 14 H 0.025 0.975 15 C -0.080 4.080 16 C -0.127 4.127 17 C 0.122 3.878 18 N -0.604 5.604 19 C 0.512 3.488 20 O -0.591 6.591 21 C -0.138 4.138 22 C 0.125 3.875 23 N -0.449 5.449 24 C -0.025 4.025 25 C -0.220 4.220 26 C -0.220 4.220 27 C -0.026 4.026 28 C 0.104 3.896 29 C -0.122 4.122 30 H 0.259 0.741 31 H 0.027 0.973 32 H 0.036 0.964 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.053 0.947 38 H 0.076 0.924 39 H 0.037 0.963 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.093 0.907 45 H 0.090 0.910 46 H 0.177 0.823 47 H 0.144 0.856 48 H 0.143 0.857 49 H 0.175 0.825 50 H 0.117 0.883 51 H 0.079 0.921 52 H 0.106 0.894 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.326 -11.434 -14.407 25.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.231 4.231 3 Si 0.792 3.208 4 H -0.188 1.188 5 H -0.250 1.250 6 H -0.195 1.195 7 C -0.340 4.340 8 H 0.069 0.931 9 N -0.351 5.351 10 C -0.043 4.043 11 C -0.160 4.160 12 C -0.151 4.151 13 C 0.054 3.946 14 H 0.043 0.957 15 C -0.100 4.100 16 C -0.166 4.166 17 C -0.001 4.001 18 N -0.336 5.336 19 C 0.301 3.699 20 O -0.473 6.473 21 C -0.178 4.178 22 C 0.003 3.997 23 N -0.125 5.125 24 C -0.154 4.154 25 C -0.245 4.245 26 C -0.244 4.244 27 C -0.155 4.155 28 C -0.017 4.017 29 C -0.160 4.160 30 H 0.068 0.932 31 H 0.045 0.955 32 H 0.054 0.946 33 H 0.112 0.888 34 H 0.088 0.912 35 H 0.116 0.884 36 H 0.103 0.897 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.056 0.944 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.112 0.888 45 H 0.109 0.891 46 H 0.194 0.806 47 H 0.162 0.838 48 H 0.161 0.839 49 H 0.192 0.808 50 H 0.135 0.865 51 H 0.098 0.902 52 H 0.125 0.875 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 17.252 -11.269 -14.239 25.047 hybrid contribution -0.973 1.107 0.573 1.582 sum 16.279 -10.161 -13.665 23.558 Atomic orbital electron populations 1.69903 1.07256 1.26983 1.56877 1.25881 0.95684 1.01281 1.00250 0.85939 0.76506 0.79156 0.79222 1.18787 1.25027 1.19473 1.18236 0.80692 0.92708 1.42315 0.93122 1.44878 1.01414 1.24638 1.64205 1.22395 0.92403 0.93120 0.96385 1.22690 0.95347 0.98925 0.99051 1.22639 0.94095 1.00067 0.98308 1.21236 0.91342 0.91035 0.90944 0.95660 1.21415 0.93807 0.98219 0.96596 1.22043 0.99487 1.00541 0.94483 1.21404 0.92354 0.94249 0.92107 1.48295 1.08900 1.30013 1.46407 1.21010 0.89552 0.80318 0.78974 1.90704 1.20477 1.70708 1.65388 1.21947 0.97762 0.97334 1.00791 1.21475 0.89086 0.92527 0.96639 1.44264 1.33010 1.22122 1.13082 1.22238 1.01947 1.03712 0.87503 1.21187 1.04136 0.98386 1.00768 1.21187 1.04727 1.03437 0.95098 1.22224 1.00142 0.91727 1.01435 1.21981 0.78973 1.03156 0.97592 1.21919 1.00380 0.99497 0.94236 0.93215 0.95543 0.94619 0.88796 0.91211 0.88388 0.89713 0.92890 0.90564 0.94430 0.92068 0.91929 0.86320 0.86072 0.88824 0.89115 0.80589 0.83846 0.83902 0.80802 0.86510 0.90241 0.87540 0.91718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.54 13.97 21.65 0.30 -60.23 16 2 C -0.04 -2.12 5.50 84.86 0.47 -1.65 16 3 Si 0.96 46.81 24.37 68.60 1.67 48.48 16 4 H -0.26 -12.01 6.14 99.48 0.61 -11.39 16 5 H -0.32 -16.16 7.11 99.48 0.71 -15.45 16 6 H -0.27 -12.36 6.07 99.48 0.60 -11.75 16 7 C -0.21 -11.55 7.68 84.03 0.65 -10.90 16 8 H 0.05 3.12 7.59 -2.91 -0.02 3.10 16 9 N -0.63 -27.86 2.93 -668.25 -1.96 -29.82 16 10 C 0.08 3.19 4.64 86.86 0.40 3.59 16 11 C -0.12 -3.35 7.09 31.99 0.23 -3.12 16 12 C -0.11 -2.74 5.31 31.78 0.17 -2.57 16 13 C 0.16 5.45 2.82 45.34 0.13 5.58 16 14 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 15 C -0.08 -2.48 1.78 -10.77 -0.02 -2.50 16 16 C -0.13 -4.83 4.94 30.67 0.15 -4.68 16 17 C 0.12 4.13 6.44 86.36 0.56 4.68 16 18 N -0.60 -15.27 2.98 -819.73 -2.44 -17.71 16 19 C 0.51 12.77 7.70 87.66 0.67 13.45 16 20 O -0.59 -20.12 15.39 -3.04 -0.05 -20.16 16 21 C -0.14 -2.06 4.37 29.85 0.13 -1.92 16 22 C 0.12 2.06 5.38 86.38 0.46 2.52 16 23 N -0.45 -7.47 2.75 -524.45 -1.44 -8.91 16 24 C -0.02 -0.40 11.43 83.22 0.95 0.55 16 25 C -0.22 -3.78 10.86 22.14 0.24 -3.54 16 26 C -0.22 -3.82 10.86 22.14 0.24 -3.58 16 27 C -0.03 -0.43 11.43 83.21 0.95 0.52 16 28 C 0.10 1.78 6.31 86.22 0.54 2.32 16 29 C -0.12 -2.40 5.07 30.53 0.15 -2.25 16 30 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 31 H 0.03 1.09 5.09 -2.39 -0.01 1.08 16 32 H 0.04 1.54 6.11 -2.38 -0.01 1.53 16 33 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.08 1.77 7.34 -2.39 -0.02 1.75 16 37 H 0.05 1.79 8.14 -2.38 -0.02 1.78 16 38 H 0.08 3.74 4.86 -2.39 -0.01 3.73 16 39 H 0.04 1.46 8.14 -2.38 -0.02 1.45 16 40 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 41 H 0.06 2.41 7.00 -2.38 -0.02 2.40 16 42 H 0.12 1.40 7.68 -2.39 -0.02 1.38 16 43 H 0.12 1.33 7.95 -2.39 -0.02 1.31 16 44 H 0.09 1.63 8.10 -2.38 -0.02 1.61 16 45 H 0.09 1.64 8.10 -2.39 -0.02 1.62 16 46 H 0.18 2.05 8.06 -2.91 -0.02 2.02 16 47 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 48 H 0.14 2.05 8.06 -2.91 -0.02 2.02 16 49 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 50 H 0.12 1.16 5.93 -2.39 -0.01 1.15 16 51 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 52 H 0.11 1.49 6.76 -2.39 -0.02 1.48 16 53 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -74.73 397.66 3.85 -70.88 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: 0.68 Total: 20.96 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: 7.08 Total: -3.48 kcal Atomic # 7 Polarization: -111.13 SS G_CDS: -5.54 Total: -116.67 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.05 Total: -20.16 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 1.67 Total: 48.48 kcal Total: -74.73 3.85 -70.88 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004585730.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.096 kcal (2) G-P(sol) polarization free energy of solvation -74.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds