Wall clock time and date at job start Wed Apr 1 2020 03:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46500 * 120.00104 * 2 1 4 4 C 1.38399 * 120.00067 * 179.97438 * 2 1 3 5 5 C 1.39901 * 119.99805 * 5.00109 * 4 2 1 6 6 N 1.31453 * 120.01251 * 180.02562 * 5 4 2 7 7 C 1.33275 * 120.00902 * 359.97438 * 6 5 4 8 8 C 1.47827 * 119.99986 * 179.97438 * 7 6 5 9 9 O 1.21561 * 119.99892 * 180.02562 * 8 7 6 10 10 N 1.34770 * 119.99842 * 0.02562 * 8 7 6 11 11 C 1.46499 * 119.99788 * 179.97438 * 10 8 7 12 12 H 1.09001 * 115.55605 * 350.69014 * 11 10 8 13 13 C 1.53035 * 117.50171 * 136.41789 * 11 10 8 14 14 C 1.52817 * 117.50326 * 204.99823 * 11 10 8 15 15 C 1.53181 * 117.71428 * 144.89960 * 14 11 10 16 16 C 1.53353 * 108.77108 * 158.89041 * 15 14 11 17 17 N 1.46837 * 108.81239 * 51.31058 * 16 15 14 18 18 C 1.36939 * 120.38422 * 123.12498 * 17 16 15 19 19 H 1.08000 * 119.99965 * 208.88713 * 18 17 16 20 20 C 1.38815 * 119.99977 * 28.87698 * 18 17 16 21 21 N 1.31626 * 119.99741 * 17.86091 * 20 18 17 22 22 Si 1.86796 * 119.99985 * 197.85257 * 20 18 17 23 23 H 1.48503 * 109.46780 * 90.00750 * 22 20 18 24 24 H 1.48502 * 109.47104 * 210.00407 * 22 20 18 25 25 H 1.48497 * 109.47423 * 330.00619 * 22 20 18 26 26 C 1.46844 * 119.23497 * 303.09534 * 17 16 15 27 27 C 1.53183 * 117.71319 * 0.14442 * 14 11 10 28 28 C 1.39401 * 119.99816 * 0.02562 * 7 6 5 29 29 N 1.32057 * 119.98903 * 359.97438 * 28 7 6 30 30 H 1.09001 * 109.47309 * 270.00046 * 1 2 3 31 31 H 1.08999 * 109.47240 * 30.00360 * 1 2 3 32 32 H 1.08999 * 109.47078 * 149.99993 * 1 2 3 33 33 H 1.09003 * 109.47324 * 270.00151 * 3 2 1 34 34 H 1.09005 * 109.46828 * 29.99821 * 3 2 1 35 35 H 1.08997 * 109.47071 * 149.99570 * 3 2 1 36 36 H 1.07996 * 119.98828 * 359.97438 * 5 4 2 37 37 H 0.96995 * 120.00360 * 0.02562 * 10 8 7 38 38 H 1.09000 * 117.50151 * 214.96130 * 13 11 10 39 39 H 1.08998 * 117.50343 * 0.02562 * 13 11 10 40 40 H 1.09003 * 109.58920 * 278.67825 * 15 14 11 41 41 H 1.09006 * 109.59071 * 39.10625 * 15 14 11 42 42 H 1.09000 * 109.57671 * 291.50943 * 16 15 14 43 43 H 1.09004 * 109.57937 * 171.10738 * 16 15 14 44 44 H 0.97001 * 119.99435 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.58374 * 297.11342 * 26 17 16 46 46 H 1.08998 * 109.58151 * 176.70769 * 26 17 16 47 47 H 1.08999 * 109.59014 * 320.90089 * 27 14 11 48 48 H 1.09002 * 109.58791 * 81.33134 * 27 14 11 49 49 H 1.08004 * 120.00888 * 180.02562 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1570 -1.1986 0.0005 5 6 1.4615 -2.4079 -0.1045 6 7 2.1184 -3.5465 -0.1036 7 6 3.4474 -3.5491 -0.0030 8 6 4.1859 -4.8297 -0.0013 9 8 5.3980 -4.8321 0.0909 10 7 3.5154 -5.9944 -0.1020 11 6 4.2473 -7.2634 -0.1010 12 1 5.3317 -7.1809 -0.1749 13 6 3.6812 -8.4050 0.7466 14 6 3.5830 -8.4618 -0.7776 15 6 4.4871 -9.4568 -1.5118 16 6 3.7454 -10.7925 -1.6446 17 7 2.4181 -10.5418 -2.2204 18 6 2.0333 -11.1715 -3.3739 19 1 1.3281 -10.6958 -4.0394 20 6 2.5499 -12.4211 -3.6880 21 7 3.1157 -13.1535 -2.7521 22 14 2.4416 -13.0633 -5.4388 23 1 3.6513 -12.6485 -6.1937 24 1 2.3553 -14.5456 -5.4179 25 1 1.2325 -12.5062 -6.0966 26 6 1.5078 -9.6086 -1.5445 27 6 2.2041 -8.2489 -1.4098 28 6 4.1408 -2.3444 0.1018 29 7 3.4808 -1.2006 0.1008 30 1 -0.3634 0.0000 1.0277 31 1 -0.3634 0.8899 -0.5139 32 1 -0.3633 -0.8900 -0.5138 33 1 2.3792 1.5834 -1.0277 34 1 1.6084 2.0284 0.5138 35 1 3.1499 1.1384 0.5139 36 1 0.3845 -2.4059 -0.1856 37 1 2.5482 -5.9925 -0.1760 38 1 4.3932 -9.0736 1.2304 39 1 2.7640 -8.2119 1.3029 40 1 4.7257 -9.0712 -2.5031 41 1 5.4058 -9.6039 -0.9438 42 1 3.6367 -11.2492 -0.6609 43 1 4.3075 -11.4589 -2.2989 44 1 3.4763 -14.0269 -2.9716 45 1 1.2604 -9.9920 -0.5546 46 1 0.5971 -9.4961 -2.1328 47 1 1.6078 -7.5944 -0.7741 48 1 2.3196 -7.7983 -2.3956 49 1 5.2178 -2.3463 0.1829 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016625937.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:31 Heat of formation + Delta-G solvation = 79.367951 kcal Electronic energy + Delta-G solvation = -29683.869124 eV Core-core repulsion = 25648.068227 eV Total energy + Delta-G solvation = -4035.800898 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.53186 -39.74887 -38.36012 -37.32915 -35.45222 -34.55625 -32.96043 -31.62926 -31.08184 -29.93193 -29.01029 -28.24159 -26.70877 -24.55281 -24.30197 -23.47704 -22.40802 -21.92352 -20.96283 -20.30976 -18.49186 -18.20543 -18.01485 -17.53703 -16.39301 -16.17067 -15.98087 -15.48922 -15.11384 -14.96442 -14.87987 -14.58901 -14.03532 -13.98119 -13.69216 -13.45688 -13.28554 -13.16787 -13.06038 -12.92740 -12.63871 -12.57472 -12.18865 -11.82828 -11.71235 -11.57981 -11.53367 -11.26934 -10.92762 -10.71387 -10.50819 -10.40237 -10.31619 -10.26889 -9.91517 -9.63891 -9.60741 -9.43818 -9.25620 -8.45275 -8.41294 -8.16827 -6.60098 -5.75255 -3.18304 0.34320 0.81296 2.20225 2.64214 3.07045 3.40378 3.47433 3.48292 3.59815 3.82046 3.89532 4.01032 4.26828 4.50004 4.52893 4.61974 4.68512 4.74903 4.89007 5.03291 5.05537 5.06601 5.20129 5.21284 5.22925 5.32293 5.42682 5.56719 5.69223 5.74742 5.93116 6.11317 6.13137 6.14436 6.17592 6.35367 6.50869 6.52506 6.63886 6.67251 6.70942 6.75609 6.89091 6.99943 7.02537 7.38842 7.41676 7.63685 7.71620 7.83316 8.20654 8.50394 9.25661 9.89358 10.46129 11.32380 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.018678 B = 0.002060 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.695482 B =13591.055543 C =14379.418843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.599 5.599 3 C 0.091 3.909 4 C 0.371 3.629 5 C -0.005 4.005 6 N -0.374 5.374 7 C -0.047 4.047 8 C 0.584 3.416 9 O -0.541 6.541 10 N -0.676 5.676 11 C 0.066 3.934 12 H 0.134 0.866 13 C -0.181 4.181 14 C -0.095 4.095 15 C -0.106 4.106 16 C 0.173 3.827 17 N -0.590 5.590 18 C -0.252 4.252 19 H 0.064 0.936 20 C 0.002 3.998 21 N -0.901 5.901 22 Si 0.901 3.099 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.279 1.279 26 C 0.150 3.850 27 C -0.097 4.097 28 C 0.172 3.828 29 N -0.508 5.508 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.172 0.828 37 H 0.410 0.590 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.060 0.940 41 H 0.052 0.948 42 H 0.018 0.982 43 H 0.090 0.910 44 H 0.253 0.747 45 H 0.019 0.981 46 H 0.054 0.946 47 H 0.047 0.953 48 H 0.063 0.937 49 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.259 27.608 8.330 29.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.311 5.311 3 C -0.051 4.051 4 C 0.131 3.869 5 C -0.178 4.178 6 N -0.089 5.089 7 C -0.187 4.187 8 C 0.369 3.631 9 O -0.418 6.418 10 N -0.325 5.325 11 C -0.039 4.039 12 H 0.151 0.849 13 C -0.219 4.219 14 C -0.096 4.096 15 C -0.145 4.145 16 C 0.047 3.953 17 N -0.312 5.312 18 C -0.382 4.382 19 H 0.082 0.918 20 C -0.197 4.197 21 N -0.546 5.546 22 Si 0.731 3.269 23 H -0.215 1.215 24 H -0.218 1.218 25 H -0.205 1.205 26 C 0.023 3.977 27 C -0.137 4.137 28 C 0.010 3.990 29 N -0.231 5.231 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.189 0.811 37 H 0.247 0.753 38 H 0.118 0.882 39 H 0.110 0.890 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.037 0.963 43 H 0.108 0.892 44 H 0.063 0.937 45 H 0.037 0.963 46 H 0.072 0.928 47 H 0.065 0.935 48 H 0.082 0.918 49 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -3.414 27.574 8.375 29.019 hybrid contribution -0.606 -0.251 -0.834 1.061 sum -4.020 27.323 7.541 28.628 Atomic orbital electron populations 1.21897 0.77487 1.03854 1.02382 1.46226 1.05758 1.03071 1.76041 1.21726 0.97919 0.83529 1.01958 1.19634 0.89886 0.87602 0.89790 1.23205 1.01411 0.86544 1.06643 1.68121 1.07793 1.28923 1.04077 1.21681 0.90622 0.95613 1.10811 1.17439 0.86452 0.82590 0.76585 1.90781 1.12985 1.87027 1.51038 1.45215 1.11058 1.04393 1.71788 1.21964 0.96708 0.78895 1.06348 0.84880 1.23532 1.02993 1.00812 0.94611 1.21957 0.97812 0.96525 0.93336 1.21888 0.96296 0.97647 0.98694 1.20767 0.85823 0.91377 0.97324 1.43979 1.11164 1.49235 1.26796 1.19198 1.25244 0.97499 0.96214 0.91808 1.25050 1.01594 0.95410 0.97641 1.70041 1.43091 1.10695 1.30723 0.86307 0.77949 0.77722 0.84893 1.21455 1.21827 1.20476 1.20840 0.92657 0.88478 0.95676 1.21628 0.93149 0.99544 0.99371 1.23507 1.01662 0.85859 0.87922 1.68130 1.06238 1.29501 1.19230 0.92044 0.90232 0.90441 0.92739 0.91224 0.89847 0.81096 0.75333 0.88249 0.89020 0.92109 0.92968 0.96343 0.89184 0.93665 0.96301 0.92766 0.93455 0.91789 0.80046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.25 10.28 59.85 0.62 0.87 16 2 N -0.60 -3.78 3.37 -189.51 -0.64 -4.42 16 3 C 0.09 0.45 10.50 59.85 0.63 1.08 16 4 C 0.37 3.40 7.37 -155.01 -1.14 2.26 16 5 C -0.01 -0.05 10.42 -17.09 -0.18 -0.23 16 6 N -0.37 -4.33 9.69 -9.44 -0.09 -4.42 16 7 C -0.05 -0.59 6.74 -82.89 -0.56 -1.15 16 8 C 0.58 8.65 7.80 -12.34 -0.10 8.56 16 9 O -0.54 -9.26 15.90 5.31 0.08 -9.18 16 10 N -0.68 -9.69 5.34 -54.83 -0.29 -9.99 16 11 C 0.07 1.02 6.14 -68.01 -0.42 0.61 16 12 H 0.13 2.17 7.40 -51.93 -0.38 1.78 16 13 C -0.18 -2.73 9.86 -26.80 -0.26 -3.00 16 14 C -0.09 -1.62 1.94 -154.50 -0.30 -1.92 16 15 C -0.11 -2.06 5.83 -26.45 -0.15 -2.21 16 16 C 0.17 4.12 5.40 -3.68 -0.02 4.10 16 17 N -0.59 -14.75 2.94 -172.26 -0.51 -15.25 16 18 C -0.25 -6.92 9.54 -15.06 -0.14 -7.06 16 19 H 0.06 1.73 7.89 -52.49 -0.41 1.31 16 20 C 0.00 0.04 4.88 -17.43 -0.09 -0.04 16 21 N -0.90 -26.20 11.23 55.49 0.62 -25.58 16 22 Si 0.90 21.81 29.59 -169.99 -5.03 16.78 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 C 0.15 3.14 6.52 -3.67 -0.02 3.11 16 27 C -0.10 -1.69 5.37 -26.45 -0.14 -1.83 16 28 C 0.17 1.96 10.76 -17.02 -0.18 1.78 16 29 N -0.51 -5.43 9.22 -11.95 -0.11 -5.54 16 30 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.08 0.11 8.07 -51.93 -0.42 -0.31 16 32 H 0.08 0.18 5.98 -51.93 -0.31 -0.13 16 33 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.07 0.19 8.07 -51.93 -0.42 -0.23 16 35 H 0.08 0.53 7.30 -51.93 -0.38 0.15 16 36 H 0.17 1.00 6.02 -52.49 -0.32 0.68 16 37 H 0.41 5.47 6.45 -40.82 -0.26 5.21 16 38 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.05 0.91 8.10 -51.93 -0.42 0.49 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.09 2.41 5.93 -51.93 -0.31 2.10 16 44 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.05 1.11 7.92 -51.93 -0.41 0.70 16 47 H 0.05 0.70 6.75 -51.93 -0.35 0.35 16 48 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 49 H 0.18 1.87 7.63 -52.48 -0.40 1.47 16 LS Contribution 394.92 15.07 5.95 5.95 Total: -1.00 -33.04 394.92 -9.79 -42.83 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -7.31 Total: 3.89 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -2.47 Total: 4.93 kcal Atomic # 7 Polarization: -64.18 SS G_CDS: -1.02 Total: -65.20 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.08 Total: -9.18 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.04 -9.79 -42.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016625937.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.196 kcal (2) G-P(sol) polarization free energy of solvation -33.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds