Wall clock time and date at job start Wed Apr 1 2020 03:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46500 * 120.00104 * 2 1 4 4 C 1.38399 * 120.00067 * 179.97438 * 2 1 3 5 5 C 1.39901 * 119.99805 * 5.00109 * 4 2 1 6 6 N 1.31453 * 120.01251 * 180.02562 * 5 4 2 7 7 C 1.33275 * 120.00902 * 359.97438 * 6 5 4 8 8 C 1.47827 * 119.99986 * 179.97438 * 7 6 5 9 9 O 1.21561 * 119.99892 * 180.02562 * 8 7 6 10 10 N 1.34770 * 119.99842 * 0.02562 * 8 7 6 11 11 C 1.46499 * 119.99788 * 179.97438 * 10 8 7 12 12 H 1.09001 * 115.55605 * 350.69014 * 11 10 8 13 13 C 1.53035 * 117.50171 * 136.41789 * 11 10 8 14 14 C 1.52817 * 117.50326 * 204.99823 * 11 10 8 15 15 C 1.53181 * 117.71428 * 144.89960 * 14 11 10 16 16 C 1.53353 * 108.77108 * 158.89041 * 15 14 11 17 17 N 1.46837 * 108.81239 * 51.31058 * 16 15 14 18 18 C 1.36939 * 120.38422 * 123.12498 * 17 16 15 19 19 H 1.08000 * 119.99965 * 208.88713 * 18 17 16 20 20 C 1.38815 * 119.99977 * 28.87698 * 18 17 16 21 21 N 1.31626 * 119.99741 * 17.86091 * 20 18 17 22 22 Si 1.86796 * 119.99985 * 197.85257 * 20 18 17 23 23 H 1.48503 * 109.46780 * 90.00750 * 22 20 18 24 24 H 1.48502 * 109.47104 * 210.00407 * 22 20 18 25 25 H 1.48497 * 109.47423 * 330.00619 * 22 20 18 26 26 C 1.46844 * 119.23497 * 303.09534 * 17 16 15 27 27 C 1.53183 * 117.71319 * 0.14442 * 14 11 10 28 28 C 1.39401 * 119.99816 * 0.02562 * 7 6 5 29 29 N 1.32057 * 119.98903 * 359.97438 * 28 7 6 30 30 H 1.09001 * 109.47309 * 270.00046 * 1 2 3 31 31 H 1.08999 * 109.47240 * 30.00360 * 1 2 3 32 32 H 1.08999 * 109.47078 * 149.99993 * 1 2 3 33 33 H 1.09003 * 109.47324 * 270.00151 * 3 2 1 34 34 H 1.09005 * 109.46828 * 29.99821 * 3 2 1 35 35 H 1.08997 * 109.47071 * 149.99570 * 3 2 1 36 36 H 1.07996 * 119.98828 * 359.97438 * 5 4 2 37 37 H 0.96995 * 120.00360 * 0.02562 * 10 8 7 38 38 H 1.09000 * 117.50151 * 214.96130 * 13 11 10 39 39 H 1.08998 * 117.50343 * 0.02562 * 13 11 10 40 40 H 1.09003 * 109.58920 * 278.67825 * 15 14 11 41 41 H 1.09006 * 109.59071 * 39.10625 * 15 14 11 42 42 H 1.09000 * 109.57671 * 291.50943 * 16 15 14 43 43 H 1.09004 * 109.57937 * 171.10738 * 16 15 14 44 44 H 0.97001 * 119.99435 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.58374 * 297.11342 * 26 17 16 46 46 H 1.08998 * 109.58151 * 176.70769 * 26 17 16 47 47 H 1.08999 * 109.59014 * 320.90089 * 27 14 11 48 48 H 1.09002 * 109.58791 * 81.33134 * 27 14 11 49 49 H 1.08004 * 120.00888 * 180.02562 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1570 -1.1986 0.0005 5 6 1.4615 -2.4079 -0.1045 6 7 2.1184 -3.5465 -0.1036 7 6 3.4474 -3.5491 -0.0030 8 6 4.1859 -4.8297 -0.0013 9 8 5.3980 -4.8321 0.0909 10 7 3.5154 -5.9944 -0.1020 11 6 4.2473 -7.2634 -0.1010 12 1 5.3317 -7.1809 -0.1749 13 6 3.6812 -8.4050 0.7466 14 6 3.5830 -8.4618 -0.7776 15 6 4.4871 -9.4568 -1.5118 16 6 3.7454 -10.7925 -1.6446 17 7 2.4181 -10.5418 -2.2204 18 6 2.0333 -11.1715 -3.3739 19 1 1.3281 -10.6958 -4.0394 20 6 2.5499 -12.4211 -3.6880 21 7 3.1157 -13.1535 -2.7521 22 14 2.4416 -13.0633 -5.4388 23 1 3.6513 -12.6485 -6.1937 24 1 2.3553 -14.5456 -5.4179 25 1 1.2325 -12.5062 -6.0966 26 6 1.5078 -9.6086 -1.5445 27 6 2.2041 -8.2489 -1.4098 28 6 4.1408 -2.3444 0.1018 29 7 3.4808 -1.2006 0.1008 30 1 -0.3634 0.0000 1.0277 31 1 -0.3634 0.8899 -0.5139 32 1 -0.3633 -0.8900 -0.5138 33 1 2.3792 1.5834 -1.0277 34 1 1.6084 2.0284 0.5138 35 1 3.1499 1.1384 0.5139 36 1 0.3845 -2.4059 -0.1856 37 1 2.5482 -5.9925 -0.1760 38 1 4.3932 -9.0736 1.2304 39 1 2.7640 -8.2119 1.3029 40 1 4.7257 -9.0712 -2.5031 41 1 5.4058 -9.6039 -0.9438 42 1 3.6367 -11.2492 -0.6609 43 1 4.3075 -11.4589 -2.2989 44 1 3.4763 -14.0269 -2.9716 45 1 1.2604 -9.9920 -0.5546 46 1 0.5971 -9.4961 -2.1328 47 1 1.6078 -7.5944 -0.7741 48 1 2.3196 -7.7983 -2.3956 49 1 5.2178 -2.3463 0.1829 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016625937.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:30 Heat of formation + Delta-G solvation = 58.181491 kcal Electronic energy + Delta-G solvation = -29684.787838 eV Core-core repulsion = 25648.068227 eV Total energy + Delta-G solvation = -4036.719612 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.30580 -40.94218 -39.64773 -37.96144 -37.11741 -35.36433 -34.35308 -33.32475 -31.95850 -31.57000 -29.93064 -29.36854 -27.39870 -26.22009 -25.26996 -24.30403 -24.00688 -23.05978 -22.42412 -21.54376 -19.82132 -19.37644 -18.80293 -18.41742 -18.05502 -17.17895 -16.80188 -16.78338 -16.28578 -15.97941 -15.78867 -15.59737 -15.41688 -15.25739 -14.99101 -14.80150 -14.69927 -14.41753 -14.13448 -13.78123 -13.43460 -13.31143 -13.29118 -13.09408 -12.93173 -12.87397 -12.58651 -12.56555 -12.51632 -12.42170 -12.24093 -11.99837 -11.77533 -11.46261 -11.37141 -11.22512 -11.15637 -10.73856 -10.46562 -10.20061 -9.69425 -8.80383 -8.60544 -7.84536 -5.30669 -0.46884 0.06558 1.46867 1.49063 1.57204 1.64035 1.68505 2.00755 2.52645 2.72827 2.99471 3.02108 3.21819 3.29911 3.34994 3.65128 3.80269 3.84540 3.89028 3.99841 4.01009 4.14850 4.22788 4.36728 4.49059 4.54270 4.56175 4.62099 4.74598 4.76021 4.86240 4.89252 4.92697 4.93634 4.95880 5.03996 5.08474 5.10103 5.19023 5.32902 5.39257 5.48358 5.56802 5.63909 5.67422 5.79528 5.93679 6.24972 6.42936 6.47304 6.75608 7.11184 7.18022 7.90415 8.41590 9.20445 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.018678 B = 0.002060 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.695482 B =13591.055543 C =14379.418843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.590 5.590 3 C 0.086 3.914 4 C 0.369 3.631 5 C 0.002 3.998 6 N -0.386 5.386 7 C -0.075 4.075 8 C 0.585 3.415 9 O -0.572 6.572 10 N -0.672 5.672 11 C 0.082 3.918 12 H 0.126 0.874 13 C -0.166 4.166 14 C -0.113 4.113 15 C -0.094 4.094 16 C 0.181 3.819 17 N -0.608 5.608 18 C -0.261 4.261 19 H 0.064 0.936 20 C -0.051 4.051 21 N -0.933 5.933 22 Si 0.964 3.036 23 H -0.287 1.287 24 H -0.295 1.295 25 H -0.268 1.268 26 C 0.146 3.854 27 C -0.082 4.082 28 C 0.173 3.827 29 N -0.525 5.525 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.058 0.942 34 H 0.097 0.903 35 H 0.067 0.933 36 H 0.206 0.794 37 H 0.416 0.584 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.047 0.953 41 H 0.069 0.931 42 H 0.001 0.999 43 H 0.054 0.946 44 H 0.249 0.751 45 H 0.019 0.981 46 H 0.054 0.946 47 H 0.080 0.920 48 H 0.053 0.947 49 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.284 30.494 8.674 32.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.300 5.300 3 C -0.056 4.056 4 C 0.127 3.873 5 C -0.173 4.173 6 N -0.101 5.101 7 C -0.214 4.214 8 C 0.371 3.629 9 O -0.452 6.452 10 N -0.321 5.321 11 C -0.024 4.024 12 H 0.143 0.857 13 C -0.205 4.205 14 C -0.115 4.115 15 C -0.133 4.133 16 C 0.055 3.945 17 N -0.331 5.331 18 C -0.391 4.391 19 H 0.082 0.918 20 C -0.247 4.247 21 N -0.579 5.579 22 Si 0.793 3.207 23 H -0.214 1.214 24 H -0.221 1.221 25 H -0.193 1.193 26 C 0.021 3.979 27 C -0.121 4.121 28 C 0.012 3.988 29 N -0.249 5.249 30 H 0.092 0.908 31 H 0.119 0.881 32 H 0.105 0.895 33 H 0.077 0.923 34 H 0.115 0.885 35 H 0.086 0.914 36 H 0.222 0.778 37 H 0.254 0.746 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.019 0.981 43 H 0.073 0.927 44 H 0.059 0.941 45 H 0.037 0.963 46 H 0.073 0.927 47 H 0.098 0.902 48 H 0.072 0.928 49 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -5.472 30.512 8.727 32.204 hybrid contribution -0.130 -0.926 -0.905 1.302 sum -5.602 29.586 7.821 31.111 Atomic orbital electron populations 1.22225 0.75174 1.05444 1.03686 1.46650 1.07236 1.02506 1.73606 1.21860 0.97798 0.83530 1.02412 1.19962 0.89629 0.88923 0.88831 1.23760 1.02748 0.85750 1.05053 1.68064 1.07270 1.30165 1.04617 1.21295 0.91251 0.94633 1.14189 1.17755 0.86208 0.83285 0.75606 1.90752 1.14353 1.87560 1.52530 1.45139 1.11224 1.03900 1.71813 1.21738 0.96330 0.79127 1.05251 0.85677 1.23611 1.03676 1.00127 0.93055 1.21800 0.97430 0.97512 0.94729 1.21646 0.96992 0.95838 0.98865 1.20536 0.85731 0.92987 0.95244 1.44239 1.12290 1.49792 1.26804 1.19506 1.24829 0.97579 0.97230 0.91802 1.25785 1.01957 0.95838 1.01087 1.70186 1.44385 1.10852 1.32436 0.85310 0.78091 0.76710 0.80614 1.21438 1.22142 1.19298 1.20987 0.92469 0.89349 0.95098 1.21429 0.93378 0.97644 0.99682 1.23499 1.01836 0.85894 0.87617 1.68171 1.07222 1.28977 1.20508 0.90778 0.88128 0.89477 0.92322 0.88452 0.91424 0.77778 0.74624 0.87651 0.87463 0.93395 0.91240 0.98060 0.92745 0.94143 0.96322 0.92714 0.90197 0.92793 0.80037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.13 10.28 127.77 1.31 1.45 16 2 N -0.59 -5.61 3.37 -753.48 -2.54 -8.15 16 3 C 0.09 0.63 10.50 127.77 1.34 1.97 16 4 C 0.37 5.96 7.37 133.35 0.98 6.94 16 5 C 0.00 0.03 10.42 85.15 0.89 0.92 16 6 N -0.39 -8.28 9.69 -183.79 -1.78 -10.06 16 7 C -0.08 -1.86 6.74 41.74 0.28 -1.58 16 8 C 0.58 17.12 7.80 86.78 0.68 17.80 16 9 O -0.57 -19.79 15.90 -3.91 -0.06 -19.85 16 10 N -0.67 -18.43 5.34 -445.66 -2.38 -20.81 16 11 C 0.08 2.42 6.14 44.94 0.28 2.70 16 12 H 0.13 4.00 7.40 -2.39 -0.02 3.98 16 13 C -0.17 -4.71 9.86 30.55 0.30 -4.41 16 14 C -0.11 -3.76 1.94 -52.17 -0.10 -3.86 16 15 C -0.09 -3.69 5.83 30.77 0.18 -3.51 16 16 C 0.18 8.87 5.40 86.43 0.47 9.34 16 17 N -0.61 -30.90 2.94 -698.89 -2.05 -32.95 16 18 C -0.26 -14.56 9.54 84.03 0.80 -13.75 16 19 H 0.06 3.48 7.89 -2.91 -0.02 3.46 16 20 C -0.05 -2.90 4.88 84.86 0.41 -2.49 16 21 N -0.93 -55.84 11.23 21.65 0.24 -55.60 16 22 Si 0.96 45.57 29.59 68.60 2.03 47.60 16 23 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 24 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 25 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 26 C 0.15 6.04 6.52 86.43 0.56 6.61 16 27 C -0.08 -2.74 5.37 30.77 0.17 -2.58 16 28 C 0.17 3.92 10.76 84.94 0.91 4.84 16 29 N -0.53 -10.72 9.22 -191.73 -1.77 -12.49 16 30 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 31 H 0.10 -0.18 8.07 -2.39 -0.02 -0.20 16 32 H 0.09 0.02 5.98 -2.39 -0.01 0.01 16 33 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.10 0.19 8.07 -2.38 -0.02 0.17 16 35 H 0.07 0.75 7.30 -2.39 -0.02 0.73 16 36 H 0.21 1.57 6.02 -2.91 -0.02 1.55 16 37 H 0.42 10.28 6.45 -92.71 -0.60 9.68 16 38 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 39 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 40 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.07 2.44 8.10 -2.38 -0.02 2.42 16 42 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 43 H 0.05 3.04 5.93 -2.38 -0.01 3.03 16 44 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 45 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.05 2.21 7.92 -2.39 -0.02 2.19 16 47 H 0.08 2.14 6.75 -2.39 -0.02 2.13 16 48 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 49 H 0.18 3.88 7.63 -2.91 -0.02 3.85 16 Total: -1.00 -73.52 394.92 1.53 -71.98 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 0.38 Total: 19.95 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: 9.46 Total: 20.38 kcal Atomic # 7 Polarization: -129.79 SS G_CDS: -10.28 Total: -140.07 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.06 Total: -19.85 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -73.52 1.53 -71.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016625937.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.165 kcal (2) G-P(sol) polarization free energy of solvation -73.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds