Wall clock time and date at job start Wed Apr 1 2020 03:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46501 * 120.00159 * 2 1 4 4 C 1.38504 * 120.00039 * 180.02562 * 2 1 3 5 5 C 1.39604 * 120.04977 * 4.97534 * 4 2 1 6 6 C 1.38277 * 118.03193 * 180.02562 * 5 4 2 7 7 C 1.40073 * 117.99480 * 0.02562 * 6 5 4 8 8 C 1.47859 * 120.09673 * 180.02562 * 7 6 5 9 9 O 1.21548 * 120.00322 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99547 * 179.97438 * 8 7 6 11 11 C 1.46509 * 119.99330 * 180.02562 * 10 8 7 12 12 H 1.08990 * 115.55397 * 350.68477 * 11 10 8 13 13 C 1.53034 * 117.49639 * 136.41623 * 11 10 8 14 14 C 1.52820 * 117.49918 * 204.99788 * 11 10 8 15 15 C 1.53177 * 117.71218 * 144.89716 * 14 11 10 16 16 C 1.53351 * 108.76965 * 158.88883 * 15 14 11 17 17 N 1.46843 * 108.81361 * 51.31318 * 16 15 14 18 18 C 1.36939 * 120.38574 * 123.12223 * 17 16 15 19 19 H 1.07994 * 119.99834 * 331.79499 * 18 17 16 20 20 C 1.38812 * 119.99836 * 151.79886 * 18 17 16 21 21 N 1.31620 * 119.99771 * 159.30148 * 20 18 17 22 22 Si 1.86798 * 120.00260 * 339.29628 * 20 18 17 23 23 H 1.48503 * 109.46847 * 94.24772 * 22 20 18 24 24 H 1.48492 * 109.47346 * 214.24787 * 22 20 18 25 25 H 1.48503 * 109.47080 * 334.25356 * 22 20 18 26 26 C 1.46854 * 119.23165 * 303.09743 * 17 16 15 27 27 C 1.53188 * 117.71144 * 0.14426 * 14 11 10 28 28 N 1.32754 * 119.80721 * 359.97438 * 7 6 5 29 29 N 1.28359 * 122.10578 * 0.02562 * 28 7 6 30 30 H 1.09006 * 109.46924 * 240.00203 * 1 2 3 31 31 H 1.09005 * 109.46909 * 359.97438 * 1 2 3 32 32 H 1.08993 * 109.47088 * 120.00105 * 1 2 3 33 33 H 1.09001 * 109.46816 * 270.00586 * 3 2 1 34 34 H 1.08994 * 109.46962 * 30.00093 * 3 2 1 35 35 H 1.09000 * 109.47420 * 150.00526 * 3 2 1 36 36 H 1.08003 * 120.97912 * 0.02562 * 5 4 2 37 37 H 1.08006 * 121.00598 * 179.97438 * 6 5 4 38 38 H 0.96993 * 120.00263 * 0.02562 * 10 8 7 39 39 H 1.09000 * 117.50099 * 214.94852 * 13 11 10 40 40 H 1.08999 * 117.50717 * 0.02562 * 13 11 10 41 41 H 1.08996 * 109.59357 * 278.67662 * 15 14 11 42 42 H 1.09004 * 109.58878 * 39.11180 * 15 14 11 43 43 H 1.08994 * 109.57991 * 291.51296 * 16 15 14 44 44 H 1.08997 * 109.58036 * 171.11018 * 16 15 14 45 45 H 0.96998 * 119.99859 * 179.97438 * 21 20 18 46 46 H 1.09001 * 109.57901 * 297.10907 * 26 17 16 47 47 H 1.09003 * 109.57906 * 176.70278 * 26 17 16 48 48 H 1.08996 * 109.58755 * 320.90022 * 27 14 11 49 49 H 1.08999 * 109.58971 * 81.33145 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1575 -1.1995 -0.0005 5 6 1.4645 -2.4068 -0.1059 6 6 2.1974 -3.5793 -0.1016 7 6 3.5905 -3.4835 0.0087 8 6 4.4196 -4.7078 0.0174 9 8 3.8924 -5.7994 -0.0708 10 7 5.7599 -4.6132 0.1231 11 6 6.5813 -5.8263 0.1312 12 1 6.0328 -6.7650 0.2075 13 6 7.8589 -5.8201 -0.7113 14 6 7.9468 -5.7493 0.8131 15 6 8.4435 -6.9938 1.5553 16 6 9.9684 -6.9098 1.6939 17 7 10.3209 -5.6036 2.2648 18 6 11.0507 -5.5272 3.4210 19 1 10.9930 -6.3223 4.1495 20 6 11.8646 -4.4277 3.6565 21 7 12.2390 -4.1371 4.8844 22 14 12.4286 -3.3605 2.2309 23 1 11.4992 -2.2130 2.0736 24 1 13.7980 -2.8547 2.5027 25 1 12.4368 -4.1655 0.9830 26 6 9.8821 -4.3802 1.5812 27 6 8.3554 -4.4129 1.4404 28 7 4.1644 -2.2902 0.1044 29 7 3.4823 -1.2029 0.1002 30 1 -0.3633 -0.5138 0.8901 31 1 -0.3633 1.0277 0.0005 32 1 -0.3633 -0.5138 -0.8899 33 1 2.3791 1.5834 -1.0277 34 1 1.6085 2.0283 0.5138 35 1 3.1500 1.1384 0.5137 36 1 0.3878 -2.4243 -0.1882 37 1 1.7104 -4.5401 -0.1802 38 1 6.1805 -3.7421 0.1939 39 1 8.1511 -6.7550 -1.1894 40 1 8.0884 -4.9134 -1.2711 41 1 7.9884 -7.0351 2.5449 42 1 8.1766 -7.8870 0.9905 43 1 10.4307 -7.0164 0.7126 44 1 10.3195 -7.7034 2.3534 45 1 12.8080 -3.3690 5.0490 46 1 10.3391 -4.3301 0.5928 47 1 10.1764 -3.5091 2.1665 48 1 8.0299 -3.5936 0.7995 49 1 7.8956 -4.3151 2.4239 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016934214.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:17 Heat of formation + Delta-G solvation = 69.424810 kcal Electronic energy + Delta-G solvation = -29893.491016 eV Core-core repulsion = 25857.258951 eV Total energy + Delta-G solvation = -4036.232065 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.24151 -41.01829 -39.77818 -38.09363 -37.30955 -34.67488 -34.18290 -33.65076 -32.44307 -32.02547 -30.24638 -29.36376 -27.33134 -26.01861 -25.64056 -24.57787 -24.00281 -23.12434 -22.61229 -21.64639 -19.99959 -19.48215 -18.65389 -18.42367 -18.11643 -17.24507 -17.13214 -16.87020 -16.04915 -16.00516 -15.87751 -15.61678 -15.39216 -15.31916 -15.17680 -14.90934 -14.56884 -14.40720 -14.24185 -14.19213 -13.63679 -13.53573 -13.46308 -13.34409 -12.99200 -12.96843 -12.66798 -12.65082 -12.41960 -12.26220 -12.08416 -11.74117 -11.60793 -11.51063 -11.34269 -11.33659 -11.24783 -10.79501 -10.75676 -10.62045 -9.74261 -8.96740 -8.84110 -8.15326 -5.46303 -0.43296 -0.19718 1.31224 1.41785 1.51735 1.55425 1.67957 1.93761 2.43231 2.59450 2.93236 2.95213 3.07957 3.37653 3.42809 3.56135 3.69925 3.71802 3.81589 3.92235 3.95546 4.03208 4.16748 4.38923 4.39842 4.47268 4.49004 4.55045 4.62058 4.70640 4.72054 4.77658 4.81619 4.86583 4.88420 4.89389 4.94810 4.96757 4.99437 5.02901 5.15128 5.22443 5.32134 5.44372 5.53473 5.89845 5.90109 5.96477 6.14945 6.35768 6.95679 6.98554 7.59018 7.66010 8.06574 9.04827 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.013494 B = 0.002476 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.435170 B =11305.342994 C =12781.849685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.596 5.596 3 C 0.086 3.914 4 C 0.343 3.657 5 C -0.170 4.170 6 C -0.028 4.028 7 C -0.053 4.053 8 C 0.587 3.413 9 O -0.563 6.563 10 N -0.677 5.677 11 C 0.081 3.919 12 H 0.136 0.864 13 C -0.161 4.161 14 C -0.119 4.119 15 C -0.088 4.088 16 C 0.147 3.853 17 N -0.619 5.619 18 C -0.247 4.247 19 H 0.049 0.951 20 C -0.038 4.038 21 N -0.959 5.959 22 Si 0.948 3.052 23 H -0.277 1.277 24 H -0.312 1.312 25 H -0.257 1.257 26 C 0.128 3.872 27 C -0.089 4.089 28 N -0.186 5.186 29 N -0.332 5.332 30 H 0.072 0.928 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.098 0.902 35 H 0.062 0.938 36 H 0.192 0.808 37 H 0.175 0.825 38 H 0.413 0.587 39 H 0.122 0.878 40 H 0.102 0.898 41 H 0.049 0.951 42 H 0.092 0.908 43 H 0.042 0.958 44 H 0.055 0.945 45 H 0.261 0.739 46 H 0.039 0.961 47 H 0.045 0.955 48 H 0.074 0.926 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.052 7.581 -16.386 34.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.307 5.307 3 C -0.056 4.056 4 C 0.101 3.899 5 C -0.203 4.203 6 C -0.056 4.056 7 C -0.205 4.205 8 C 0.372 3.628 9 O -0.441 6.441 10 N -0.326 5.326 11 C -0.025 4.025 12 H 0.154 0.846 13 C -0.199 4.199 14 C -0.121 4.121 15 C -0.127 4.127 16 C 0.023 3.977 17 N -0.343 5.343 18 C -0.377 4.377 19 H 0.067 0.933 20 C -0.232 4.232 21 N -0.605 5.605 22 Si 0.777 3.223 23 H -0.204 1.204 24 H -0.241 1.241 25 H -0.181 1.181 26 C 0.003 3.997 27 C -0.128 4.128 28 N -0.033 5.033 29 N -0.187 5.187 30 H 0.090 0.910 31 H 0.125 0.875 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.116 0.884 35 H 0.081 0.919 36 H 0.209 0.791 37 H 0.193 0.807 38 H 0.251 0.749 39 H 0.140 0.860 40 H 0.120 0.880 41 H 0.068 0.932 42 H 0.111 0.889 43 H 0.060 0.940 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.057 0.943 47 H 0.064 0.936 48 H 0.093 0.907 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -28.112 7.968 -16.223 33.421 hybrid contribution -0.088 0.327 0.088 0.350 sum -28.200 8.296 -16.135 33.532 Atomic orbital electron populations 1.22162 0.75246 1.05686 1.03043 1.46527 1.07091 1.02321 1.74769 1.21883 0.97714 0.83611 1.02419 1.20458 0.90955 0.88830 0.89614 1.22134 1.03684 0.89483 1.05018 1.22344 0.91773 1.01459 0.90024 1.22326 0.94660 0.93515 1.09982 1.17628 0.82080 0.87264 0.75843 1.90747 1.73131 1.28097 1.52079 1.45271 1.05641 1.10099 1.71546 1.21845 0.85916 0.89444 1.05260 0.84603 1.23685 0.98836 1.04966 0.92454 1.21784 0.98387 0.96795 0.95121 1.21539 0.96289 0.95483 0.99405 1.21065 0.93638 0.86217 0.96801 1.44424 1.61373 1.01822 1.26691 1.18879 1.18370 1.06104 0.94300 0.93282 1.25943 0.98804 1.00216 0.98277 1.69980 1.40152 1.29710 1.20678 0.85868 0.76057 0.79008 0.81391 1.20367 1.24129 1.18148 1.21310 0.93956 0.89016 0.95431 1.21439 0.96273 0.95296 0.99832 1.72896 1.31249 0.94846 1.04279 1.73054 1.05368 1.19202 1.21048 0.90967 0.87513 0.90482 0.92231 0.88351 0.91893 0.79101 0.80732 0.74901 0.86006 0.87975 0.93203 0.88940 0.94025 0.92593 0.93050 0.94311 0.93641 0.90715 0.93211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.20 9.42 127.77 1.20 1.40 16 2 N -0.60 -6.71 3.38 -753.58 -2.54 -9.26 16 3 C 0.09 0.86 10.47 127.77 1.34 2.20 16 4 C 0.34 6.07 7.44 133.21 0.99 7.06 16 5 C -0.17 -2.28 9.40 22.61 0.21 -2.07 16 6 C -0.03 -0.51 9.71 22.72 0.22 -0.29 16 7 C -0.05 -1.32 6.83 42.00 0.29 -1.03 16 8 C 0.59 16.51 7.80 86.79 0.68 17.18 16 9 O -0.56 -17.85 15.95 -3.87 -0.06 -17.92 16 10 N -0.68 -18.33 5.34 -445.62 -2.38 -20.71 16 11 C 0.08 2.15 6.14 44.94 0.28 2.43 16 12 H 0.14 3.67 7.40 -2.39 -0.02 3.66 16 13 C -0.16 -3.87 9.87 30.56 0.30 -3.57 16 14 C -0.12 -3.57 1.94 -52.17 -0.10 -3.67 16 15 C -0.09 -2.78 5.83 30.77 0.18 -2.60 16 16 C 0.15 5.66 6.52 86.43 0.56 6.22 16 17 N -0.62 -29.59 2.71 -698.88 -1.89 -31.48 16 18 C -0.25 -14.35 10.00 84.03 0.84 -13.51 16 19 H 0.05 3.12 8.06 -2.91 -0.02 3.10 16 20 C -0.04 -2.28 5.23 84.86 0.44 -1.83 16 21 N -0.96 -61.84 13.97 21.65 0.30 -61.53 16 22 Si 0.95 47.73 24.40 68.60 1.67 49.40 16 23 H -0.28 -13.26 6.66 99.48 0.66 -12.60 16 24 H -0.31 -15.98 7.11 99.48 0.71 -15.27 16 25 H -0.26 -12.27 6.65 99.48 0.66 -11.61 16 26 C 0.13 5.51 4.23 86.43 0.37 5.88 16 27 C -0.09 -3.14 5.37 30.77 0.17 -2.98 16 28 N -0.19 -5.02 10.73 -48.50 -0.52 -5.54 16 29 N -0.33 -8.21 10.26 -55.16 -0.57 -8.77 16 30 H 0.07 0.10 8.12 -2.38 -0.02 0.08 16 31 H 0.11 -0.15 7.79 -2.38 -0.02 -0.17 16 32 H 0.08 0.02 7.76 -2.39 -0.02 0.00 16 33 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.10 0.42 7.92 -2.39 -0.02 0.40 16 35 H 0.06 0.95 7.31 -2.39 -0.02 0.93 16 36 H 0.19 0.89 6.81 -2.91 -0.02 0.87 16 37 H 0.18 2.57 7.71 -2.91 -0.02 2.55 16 38 H 0.41 10.97 6.46 -92.71 -0.60 10.37 16 39 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.09 2.29 8.10 -2.38 -0.02 2.27 16 43 H 0.04 1.47 8.14 -2.39 -0.02 1.46 16 44 H 0.06 2.20 7.92 -2.39 -0.02 2.18 16 45 H 0.26 15.97 8.31 -92.71 -0.77 15.19 16 46 H 0.04 1.59 7.27 -2.39 -0.02 1.57 16 47 H 0.05 2.19 4.31 -2.39 -0.01 2.18 16 48 H 0.07 2.26 6.75 -2.39 -0.02 2.24 16 49 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -78.90 390.18 2.27 -76.63 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: 0.29 Total: 18.36 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: 7.96 Total: 10.82 kcal Atomic # 7 Polarization: -129.70 SS G_CDS: -7.60 Total: -137.30 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.06 Total: -17.92 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 1.67 Total: 49.40 kcal Total: -78.90 2.27 -76.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016934214.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.055 kcal (2) G-P(sol) polarization free energy of solvation -78.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds