Wall clock time and date at job start Wed Apr 1 2020 03:12:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46497 * 1
3 3 C 1.46500 * 119.99908 * 2 1
4 4 C 1.38408 * 120.00435 * 179.97438 * 2 1 3
5 5 C 1.39893 * 119.99102 * 5.02355 * 4 2 1
6 6 N 1.31462 * 120.00905 * 179.76539 * 5 4 2
7 7 C 1.33281 * 120.00848 * 0.46321 * 6 5 4
8 8 C 1.47819 * 119.99994 * 179.78937 * 7 6 5
9 9 O 1.21555 * 119.99788 * 179.72702 * 8 7 6
10 10 N 1.34772 * 120.00086 * 359.72488 * 8 7 6
11 11 C 1.46497 * 119.99996 * 179.97438 * 10 8 7
12 12 C 1.53152 * 109.43751 * 205.09046 * 11 10 8
13 13 C 1.53699 * 108.88077 * 186.08640 * 12 11 10
14 14 H 1.08995 * 112.10360 * 188.25405 * 13 12 11
15 15 C 1.54607 * 107.82957 * 312.23072 * 13 12 11
16 16 C 1.54312 * 104.75131 * 88.66658 * 15 13 12
17 17 C 1.54604 * 104.75174 * 359.97438 * 16 15 13
18 18 H 1.09004 * 112.19260 * 146.79855 * 17 16 15
19 19 C 1.53146 * 109.39809 * 84.89228 * 11 10 8
20 20 N 1.48297 * 104.26126 * 25.14155 * 17 16 15
21 21 C 1.36937 * 128.21330 * 138.42888 * 20 17 16
22 22 H 1.07993 * 119.99875 * 195.07567 * 21 20 17
23 23 C 1.38810 * 119.99529 * 15.07498 * 21 20 17
24 24 N 1.31612 * 120.00477 * 9.27961 * 23 21 20
25 25 Si 1.86810 * 119.99707 * 189.28158 * 23 21 20
26 26 H 1.48494 * 109.46890 * 90.00100 * 25 23 21
27 27 H 1.48505 * 109.46864 * 210.00255 * 25 23 21
28 28 H 1.48502 * 109.46681 * 330.00060 * 25 23 21
29 29 C 1.39406 * 119.99554 * 359.51693 * 7 6 5
30 30 N 1.32054 * 119.98887 * 0.24680 * 29 7 6
31 31 H 1.09004 * 109.47032 * 269.99770 * 1 2 3
32 32 H 1.09000 * 109.47020 * 30.00040 * 1 2 3
33 33 H 1.08997 * 109.46673 * 150.00089 * 1 2 3
34 34 H 1.09000 * 109.47279 * 269.99413 * 3 2 1
35 35 H 1.08991 * 109.47224 * 30.00162 * 3 2 1
36 36 H 1.09006 * 109.47283 * 150.00078 * 3 2 1
37 37 H 1.07996 * 119.99702 * 359.97438 * 5 4 2
38 38 H 0.97006 * 120.00010 * 0.02562 * 10 8 7
39 39 H 1.09001 * 109.43486 * 324.99917 * 11 10 8
40 40 H 1.09003 * 109.56938 * 305.90733 * 12 11 10
41 41 H 1.08997 * 109.56780 * 66.26364 * 12 11 10
42 42 H 1.09000 * 110.37740 * 207.48227 * 15 13 12
43 43 H 1.09000 * 110.38223 * 329.73395 * 15 13 12
44 44 H 1.09008 * 110.38248 * 118.81489 * 16 15 13
45 45 H 1.08992 * 110.38372 * 241.17546 * 16 15 13
46 46 H 1.09000 * 109.56740 * 293.75360 * 19 11 10
47 47 H 1.08999 * 109.57108 * 54.11552 * 19 11 10
48 48 H 0.97007 * 119.99972 * 179.97438 * 24 23 21
49 49 H 1.08004 * 120.00605 * 180.27602 * 29 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.1571 -1.1986 0.0005
5 6 1.4616 -2.4078 -0.1050
6 7 2.1190 -3.5462 -0.1092
7 6 3.4476 -3.5491 -0.0036
8 6 4.1862 -4.8296 -0.0036
9 8 5.3983 -4.8319 0.0878
10 7 3.5157 -5.9943 -0.1048
11 6 4.2478 -7.2632 -0.1054
12 6 3.4195 -8.3291 -0.8289
13 6 4.1260 -9.6870 -0.6900
14 1 3.6598 -10.4567 -1.3050
15 6 5.6177 -9.4828 -1.0414
16 6 6.2868 -9.0967 0.2944
17 6 5.1365 -9.1033 1.3273
18 1 5.4719 -9.4193 2.3151
19 6 4.5054 -7.7025 1.3389
20 7 4.1342 -10.0326 0.7519
21 6 3.3916 -10.9841 1.3988
22 1 2.8827 -11.7495 0.8319
23 6 3.2931 -10.9646 2.7833
24 7 3.7562 -9.9363 3.4617
25 14 2.5033 -12.3983 3.6837
26 1 3.5423 -13.4045 4.0198
27 1 1.8664 -11.9081 4.9325
28 1 1.4733 -13.0216 2.8143
29 6 4.1410 -2.3443 0.1012
30 7 3.4809 -1.2006 0.1007
31 1 -0.3633 0.0000 1.0277
32 1 -0.3633 0.8900 -0.5138
33 1 -0.3632 -0.8900 -0.5138
34 1 2.3792 1.5834 -1.0277
35 1 1.6084 2.0283 0.5138
36 1 3.1499 1.1384 0.5138
37 1 0.3847 -2.4059 -0.1865
38 1 2.5484 -5.9923 -0.1781
39 1 5.1997 -7.1325 -0.6201
40 1 2.4272 -8.3863 -0.3815
41 1 3.3318 -8.0694 -1.8839
42 1 6.0467 -10.4074 -1.4276
43 1 5.7295 -8.6798 -1.7700
44 1 7.0451 -9.8314 0.5655
45 1 6.7281 -8.1026 0.2246
46 1 5.1864 -6.9993 1.8184
47 1 3.5628 -7.7310 1.8855
48 1 3.6870 -9.9226 4.4292
49 1 5.2180 -2.3463 0.1823
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001021258856.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:12:21
Heat of formation + Delta-G solvation = 61.964903 kcal
Electronic energy + Delta-G solvation = -30639.834262 eV
Core-core repulsion = 26603.278712 eV
Total energy + Delta-G solvation = -4036.555551 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.191 amu
Computer time = 1.02 seconds
Orbital eigenvalues (eV)
-41.35417 -39.79041 -38.47871 -37.18638 -34.63353 -34.06617 -32.56118 -31.22717
-30.18878 -29.47176 -29.12198 -28.89483 -26.50620 -24.65506 -24.31876 -23.24485
-23.05808 -21.60734 -20.29300 -19.27886 -18.72992 -18.10326 -17.91348 -17.41905
-16.52061 -16.02582 -15.90425 -15.35527 -14.87357 -14.82133 -14.74407 -14.43847
-14.05145 -13.70975 -13.61136 -13.07786 -12.95146 -12.88116 -12.81070 -12.73418
-12.45958 -12.03936 -11.88253 -11.65940 -11.49802 -11.41814 -11.31317 -10.99228
-10.76634 -10.60683 -10.58332 -10.34595 -10.07643 -9.98016 -9.70778 -9.58109
-9.34026 -9.26173 -9.20037 -8.66119 -8.35051 -8.03125 -6.77664 -5.71440
-3.06605 0.53441 0.98222 2.33806 2.93653 3.41007 3.46734 3.47120
3.48540 3.85292 4.02290 4.05566 4.19148 4.50590 4.61320 4.76062
4.81567 4.93458 5.06528 5.14887 5.16606 5.31406 5.37857 5.43069
5.45853 5.59502 5.81385 5.86158 5.93107 5.98466 6.03598 6.09608
6.25817 6.27787 6.37276 6.52955 6.60053 6.67284 6.74773 6.76646
6.82509 6.93819 7.03140 7.12012 7.16724 7.28060 7.58343 7.63185
7.67656 7.83322 7.98903 8.29532 8.55557 9.18470 9.80750 10.60097
11.40566
Molecular weight = 345.19amu
Principal moments of inertia in cm(-1)
A = 0.016237 B = 0.002502 C = 0.002322
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1724.072442 B =11188.112833 C =12057.436130
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.088 3.912
2 N -0.602 5.602
3 C 0.093 3.907
4 C 0.367 3.633
5 C -0.007 4.007
6 N -0.374 5.374
7 C -0.040 4.040
8 C 0.578 3.422
9 O -0.543 6.543
10 N -0.701 5.701
11 C 0.145 3.855
12 C -0.135 4.135
13 C 0.151 3.849
14 H 0.069 0.931
15 C -0.132 4.132
16 C -0.145 4.145
17 C 0.183 3.817
18 H 0.110 0.890
19 C -0.120 4.120
20 N -0.584 5.584
21 C -0.223 4.223
22 H 0.075 0.925
23 C -0.005 4.005
24 N -0.910 5.910
25 Si 0.908 3.092
26 H -0.290 1.290
27 H -0.292 1.292
28 H -0.282 1.282
29 C 0.168 3.832
30 N -0.508 5.508
31 H 0.060 0.940
32 H 0.077 0.923
33 H 0.076 0.924
34 H 0.052 0.948
35 H 0.068 0.932
36 H 0.083 0.917
37 H 0.170 0.830
38 H 0.403 0.597
39 H 0.084 0.916
40 H 0.066 0.934
41 H 0.048 0.952
42 H 0.053 0.947
43 H 0.055 0.945
44 H 0.052 0.948
45 H 0.058 0.942
46 H 0.043 0.957
47 H 0.074 0.926
48 H 0.252 0.748
49 H 0.182 0.818
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.418 20.401 -9.107 22.989
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.055 4.055
2 N -0.314 5.314
3 C -0.050 4.050
4 C 0.127 3.873
5 C -0.179 4.179
6 N -0.089 5.089
7 C -0.181 4.181
8 C 0.362 3.638
9 O -0.420 6.420
10 N -0.350 5.350
11 C 0.042 3.958
12 C -0.175 4.175
13 C 0.043 3.957
14 H 0.088 0.912
15 C -0.171 4.171
16 C -0.184 4.184
17 C 0.075 3.925
18 H 0.128 0.872
19 C -0.160 4.160
20 N -0.305 5.305
21 C -0.351 4.351
22 H 0.092 0.908
23 C -0.202 4.202
24 N -0.556 5.556
25 Si 0.739 3.261
26 H -0.217 1.217
27 H -0.219 1.219
28 H -0.208 1.208
29 C 0.006 3.994
30 N -0.231 5.231
31 H 0.079 0.921
32 H 0.096 0.904
33 H 0.095 0.905
34 H 0.071 0.929
35 H 0.087 0.913
36 H 0.101 0.899
37 H 0.187 0.813
38 H 0.238 0.762
39 H 0.102 0.898
40 H 0.084 0.916
41 H 0.067 0.933
42 H 0.072 0.928
43 H 0.073 0.927
44 H 0.071 0.929
45 H 0.076 0.924
46 H 0.062 0.938
47 H 0.093 0.907
48 H 0.062 0.938
49 H 0.199 0.801
Dipole moment (debyes) X Y Z Total
from point charges -4.717 20.406 -8.795 22.715
hybrid contribution -1.110 -0.419 0.536 1.302
sum -5.826 19.986 -8.258 22.396
Atomic orbital electron populations
1.21867 0.77647 1.03648 1.02323 1.46180 1.05639 1.03039 1.76557
1.21696 0.97941 0.83597 1.01780 1.19613 0.89922 0.87535 0.90181
1.23191 1.01316 0.86646 1.06788 1.68151 1.07904 1.28714 1.04156
1.21881 0.90524 0.96034 1.09689 1.17462 0.86539 0.82718 0.77125
1.90773 1.12961 1.87065 1.51207 1.46188 1.11200 1.05754 1.71832
1.21403 0.95099 0.80563 0.98690 1.22506 1.00132 0.96991 0.97895
1.21494 0.93142 0.92643 0.88457 0.91241 1.22648 0.97444 0.99774
0.97195 1.22814 0.99236 0.99683 0.96682 1.21477 0.86443 0.87533
0.97037 0.87238 1.22382 1.02137 0.98154 0.93336 1.45201 1.43927
1.39913 1.01427 1.18977 1.24015 1.02842 0.89290 0.90764 1.24832
1.01061 0.97649 0.96661 1.69884 1.50922 1.28521 1.06245 0.86181
0.78759 0.81863 0.79288 1.21687 1.21874 1.20752 1.23519 1.01684
0.85932 0.88222 1.68108 1.06229 1.29638 1.19121 0.92135 0.90383
0.90544 0.92903 0.91342 0.89879 0.81296 0.76191 0.89843 0.91560
0.93349 0.92783 0.92652 0.92939 0.92371 0.93822 0.90749 0.93752
0.80070
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.37 10.28 59.85 0.62 0.98 16
2 N -0.60 -4.61 3.37 -189.51 -0.64 -5.24 16
3 C 0.09 0.57 10.50 59.85 0.63 1.20 16
4 C 0.37 3.95 7.37 -155.00 -1.14 2.81 16
5 C -0.01 -0.08 10.42 -17.09 -0.18 -0.25 16
6 N -0.37 -5.09 9.69 -9.44 -0.09 -5.18 16
7 C -0.04 -0.60 6.74 -82.88 -0.56 -1.16 16
8 C 0.58 10.09 7.76 -12.34 -0.10 9.99 16
9 O -0.54 -10.74 15.99 5.32 0.09 -10.65 16
10 N -0.70 -12.15 5.06 -54.61 -0.28 -12.43 16
11 C 0.15 2.77 2.10 -67.78 -0.14 2.63 16
12 C -0.13 -2.49 5.09 -26.29 -0.13 -2.62 16
13 C 0.15 3.06 4.32 -65.75 -0.28 2.77 16
14 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16
15 C -0.13 -2.40 5.98 -25.20 -0.15 -2.55 16
16 C -0.15 -2.91 5.98 -25.20 -0.15 -3.06 16
17 C 0.18 4.30 3.13 -65.76 -0.21 4.10 16
18 H 0.11 2.96 6.34 -51.93 -0.33 2.64 16
19 C -0.12 -2.68 5.11 -26.32 -0.13 -2.81 16
20 N -0.58 -14.30 2.82 -152.81 -0.43 -14.73 16
21 C -0.22 -6.01 10.38 -15.06 -0.16 -6.17 16
22 H 0.07 1.95 7.85 -52.49 -0.41 1.54 16
23 C 0.00 -0.13 5.42 -17.43 -0.09 -0.23 16
24 N -0.91 -25.92 10.60 55.49 0.59 -25.33 16
25 Si 0.91 21.80 29.56 -169.99 -5.03 16.77 16
26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16
27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16
28 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
29 C 0.17 2.25 10.76 -17.02 -0.18 2.06 16
30 N -0.51 -6.29 9.22 -11.95 -0.11 -6.40 16
31 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16
32 H 0.08 0.18 8.07 -51.93 -0.42 -0.24 16
33 H 0.08 0.26 5.98 -51.93 -0.31 -0.05 16
34 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16
35 H 0.07 0.27 8.07 -51.93 -0.42 -0.15 16
36 H 0.08 0.63 7.30 -51.93 -0.38 0.26 16
37 H 0.17 1.26 6.02 -52.49 -0.32 0.94 16
38 H 0.40 6.49 7.94 -40.82 -0.32 6.17 16
39 H 0.08 1.64 4.96 -51.93 -0.26 1.38 16
40 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16
41 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16
42 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16
43 H 0.05 0.91 7.05 -51.93 -0.37 0.55 16
44 H 0.05 1.03 8.14 -51.92 -0.42 0.61 16
45 H 0.06 1.12 7.04 -51.93 -0.37 0.75 16
46 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16
47 H 0.07 1.90 8.01 -51.93 -0.42 1.48 16
48 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16
49 H 0.18 2.23 7.63 -52.48 -0.40 1.83 16
LS Contribution 384.70 15.07 5.80 5.80
Total: -1.00 -32.16 384.70 -9.70 -41.86
By element:
Atomic # 1 Polarization: 15.08 SS G_CDS: -7.23 Total: 7.85 kcal
Atomic # 6 Polarization: 10.06 SS G_CDS: -2.37 Total: 7.69 kcal
Atomic # 7 Polarization: -68.36 SS G_CDS: -0.96 Total: -69.32 kcal
Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal
Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal
Total LS contribution 5.80 Total: 5.80 kcal
Total: -32.16 -9.70 -41.86 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001021258856.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 103.825 kcal
(2) G-P(sol) polarization free energy of solvation -32.158 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.667 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.702 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.860 kcal
(6) G-S(sol) free energy of system = (1) + (5) 61.965 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.02 seconds