Wall clock time and date at job start Wed Apr 1 2020 03:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86802 * 119.99919 * 2 1 4 4 H 1.48497 * 109.47269 * 355.00541 * 3 2 1 5 5 H 1.48496 * 109.47438 * 115.00860 * 3 2 1 6 6 H 1.48497 * 109.47196 * 235.00887 * 3 2 1 7 7 C 1.38811 * 120.00225 * 180.27870 * 2 1 3 8 8 H 1.08003 * 120.00214 * 167.77706 * 7 2 1 9 9 N 1.36934 * 119.99899 * 347.78182 * 7 2 1 10 10 C 1.47431 * 125.64475 * 312.96612 * 9 7 2 11 11 C 1.54691 * 104.93587 * 204.07677 * 10 9 7 12 12 C 1.55150 * 101.68255 * 323.27733 * 11 10 9 13 13 C 1.47019 * 125.65121 * 133.27918 * 9 7 2 14 14 H 1.08999 * 109.88145 * 59.48273 * 13 9 7 15 15 C 1.53001 * 109.88228 * 298.47120 * 13 9 7 16 16 H 1.09008 * 109.58420 * 53.71432 * 15 13 9 17 17 C 1.53194 * 109.58650 * 293.43187 * 15 13 9 18 18 C 1.53081 * 109.29091 * 185.71781 * 17 15 13 19 19 C 1.53040 * 109.65948 * 61.15229 * 18 17 15 20 20 C 1.53191 * 109.31121 * 298.69726 * 19 18 17 21 21 N 1.46923 * 108.77903 * 54.63610 * 20 19 18 22 22 C 1.34775 * 120.63497 * 126.36439 * 21 20 19 23 23 O 1.21281 * 120.00305 * 182.78688 * 22 21 20 24 24 C 1.50703 * 119.99605 * 2.79394 * 22 21 20 25 25 C 1.53004 * 109.47062 * 183.64520 * 24 22 21 26 26 N 1.46495 * 109.47282 * 184.34317 * 25 24 22 27 27 C 1.36341 * 125.63824 * 269.69794 * 26 25 24 28 28 C 1.34851 * 108.21753 * 179.82787 * 27 26 25 29 29 C 1.40897 * 107.41664 * 0.42544 * 28 27 26 30 30 C 1.34843 * 107.41728 * 359.73381 * 29 28 27 31 31 H 0.97006 * 120.00100 * 183.89435 * 1 2 3 32 32 H 1.08996 * 110.36492 * 323.00446 * 10 9 7 33 33 H 1.08994 * 110.36238 * 85.32913 * 10 9 7 34 34 H 1.09007 * 111.09788 * 205.10645 * 11 10 9 35 35 H 1.08998 * 110.85123 * 81.34347 * 11 10 9 36 36 H 1.09008 * 110.72044 * 276.97989 * 12 11 10 37 37 H 1.08993 * 110.87753 * 153.77150 * 12 11 10 38 38 H 1.08999 * 109.49498 * 305.52376 * 17 15 13 39 39 H 1.08997 * 109.49833 * 65.62506 * 17 15 13 40 40 H 1.08996 * 109.34488 * 301.12732 * 18 17 15 41 41 H 1.08999 * 109.43740 * 181.23201 * 18 17 15 42 42 H 1.08994 * 109.49920 * 178.74597 * 19 18 17 43 43 H 1.09001 * 109.52322 * 58.66442 * 19 18 17 44 44 H 1.08995 * 109.58738 * 294.84485 * 20 19 18 45 45 H 1.09001 * 109.70282 * 174.49094 * 20 19 18 46 46 H 1.08997 * 109.47141 * 303.64538 * 24 22 21 47 47 H 1.09004 * 109.47367 * 63.64817 * 24 22 21 48 48 H 1.08997 * 109.47201 * 304.34721 * 25 24 22 49 49 H 1.09007 * 109.46812 * 64.34328 * 25 24 22 50 50 H 1.07995 * 125.89079 * 359.95786 * 27 26 25 51 51 H 1.08001 * 126.29239 * 180.16116 * 28 27 26 52 52 H 1.07998 * 126.29065 * 179.73212 * 29 28 27 53 53 H 1.07999 * 125.89250 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2897 2.7438 -0.1219 5 1 3.0102 1.7506 1.2687 6 1 3.1929 1.6450 -1.1470 7 6 2.0102 -1.2021 -0.0058 8 1 3.0719 -1.2117 -0.2039 9 7 1.3488 -2.3758 0.2394 10 6 0.3953 -2.6111 1.3390 11 6 0.4175 -4.1412 1.5654 12 6 0.5701 -4.6711 0.1152 13 6 1.4768 -3.6118 -0.5462 14 1 2.5123 -3.9519 -0.5362 15 6 1.0253 -3.3620 -1.9866 16 1 1.5699 -2.5120 -2.3980 17 6 -0.4781 -3.0685 -2.0099 18 6 -0.9499 -2.9609 -3.4622 19 6 -0.7022 -4.2877 -4.1837 20 6 0.7993 -4.5912 -4.1846 21 7 1.2896 -4.5566 -2.8000 22 6 1.9685 -5.6011 -2.2855 23 8 2.3240 -5.5815 -1.1261 24 6 2.2858 -6.7933 -3.1510 25 6 2.9763 -7.8667 -2.3071 26 7 3.3777 -8.9817 -3.1684 27 6 2.6196 -10.0785 -3.4531 28 6 3.3262 -10.8766 -4.2791 29 6 4.5699 -10.2543 -4.5050 30 6 4.5736 -9.0968 -3.8133 31 1 -0.4850 -0.8381 0.0571 32 1 0.7187 -2.0892 2.2396 33 1 -0.6044 -2.2871 1.0500 34 1 -0.5158 -4.4855 2.0110 35 1 1.2708 -4.4303 2.1789 36 1 -0.3983 -4.7152 -0.3832 37 1 1.0510 -5.6492 0.1076 38 1 -1.0144 -3.8777 -1.5142 39 1 -0.6738 -2.1302 -1.4910 40 1 -0.3973 -2.1663 -3.9634 41 1 -2.0151 -2.7305 -3.4815 42 1 -1.0593 -4.2154 -5.2110 43 1 -1.2348 -5.0873 -3.6688 44 1 1.3234 -3.8411 -4.7767 45 1 0.9742 -5.5797 -4.6095 46 1 1.3625 -7.1964 -3.5670 47 1 2.9469 -6.4879 -3.9621 48 1 3.8585 -7.4412 -1.8289 49 1 2.2873 -8.2274 -1.5433 50 1 1.6240 -10.2734 -3.0828 51 1 3.0004 -11.8215 -4.6884 52 1 5.3727 -10.6344 -5.1193 53 1 5.3838 -8.3837 -3.7766 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025280206.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:37 Heat of formation + Delta-G solvation = 50.439164 kcal Electronic energy + Delta-G solvation = -32446.538721 eV Core-core repulsion = 28513.023720 eV Total energy + Delta-G solvation = -3933.515001 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.16696 -41.73724 -39.12135 -38.18094 -35.21953 -34.58560 -33.85865 -32.71211 -30.98778 -30.44008 -29.60415 -28.72253 -26.51754 -25.94107 -25.05438 -23.97131 -22.31478 -21.68298 -21.32726 -21.30158 -20.70014 -19.61995 -19.54808 -18.28580 -17.33464 -17.00791 -16.93338 -16.53005 -16.16945 -15.71974 -15.49635 -15.37675 -15.18550 -15.03952 -14.90090 -14.67279 -14.34722 -14.29617 -14.08052 -13.74591 -13.43241 -13.19703 -13.08986 -13.03186 -12.91746 -12.84853 -12.73350 -12.59442 -12.53824 -12.25092 -12.07788 -11.93445 -11.80051 -11.71513 -11.52350 -11.37354 -11.26719 -11.08689 -10.60910 -10.05771 -9.49095 -9.41217 -9.01827 -8.71215 -8.03104 -5.64446 1.39873 1.52560 1.60326 1.64234 1.79187 1.83567 2.20158 2.26961 2.59790 3.26496 3.53681 3.64671 3.77208 3.79379 3.86488 3.89919 3.96265 4.06898 4.12205 4.20484 4.27707 4.31964 4.35123 4.40770 4.43877 4.47637 4.49575 4.62513 4.71195 4.73553 4.77424 4.82571 4.84365 4.87136 4.94970 4.97096 5.01428 5.05699 5.13238 5.23185 5.24442 5.29417 5.39696 5.44964 5.47396 5.48320 5.59207 5.79296 5.96495 6.14879 6.39123 6.48166 6.53393 6.56459 7.05290 7.30201 7.71413 8.47451 9.03503 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.015292 B = 0.003007 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.623027 B = 9309.696342 C = 9671.165773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.055 4.055 3 Si 1.117 2.883 4 H -0.286 1.286 5 H -0.281 1.281 6 H -0.276 1.276 7 C -0.344 4.344 8 H 0.026 0.974 9 N -0.611 5.611 10 C 0.136 3.864 11 C -0.127 4.127 12 C -0.108 4.108 13 C 0.162 3.838 14 H 0.049 0.951 15 C 0.156 3.844 16 H 0.030 0.970 17 C -0.118 4.118 18 C -0.117 4.117 19 C -0.121 4.121 20 C 0.101 3.899 21 N -0.601 5.601 22 C 0.499 3.501 23 O -0.549 6.549 24 C -0.137 4.137 25 C 0.126 3.874 26 N -0.448 5.448 27 C -0.022 4.022 28 C -0.221 4.221 29 C -0.220 4.220 30 C -0.028 4.028 31 H 0.266 0.734 32 H 0.011 0.989 33 H 0.005 0.995 34 H 0.081 0.919 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.097 0.903 38 H 0.065 0.935 39 H 0.042 0.958 40 H 0.046 0.954 41 H 0.066 0.934 42 H 0.102 0.898 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.117 0.883 46 H 0.119 0.881 47 H 0.109 0.891 48 H 0.088 0.912 49 H 0.098 0.902 50 H 0.179 0.821 51 H 0.144 0.856 52 H 0.142 0.858 53 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.587 -18.791 -12.063 22.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.254 4.254 3 Si 0.941 3.059 4 H -0.212 1.212 5 H -0.207 1.207 6 H -0.201 1.201 7 C -0.474 4.474 8 H 0.043 0.957 9 N -0.338 5.338 10 C 0.011 3.989 11 C -0.165 4.165 12 C -0.145 4.145 13 C 0.057 3.943 14 H 0.067 0.933 15 C 0.051 3.949 16 H 0.048 0.952 17 C -0.156 4.156 18 C -0.155 4.155 19 C -0.159 4.159 20 C -0.021 4.021 21 N -0.334 5.334 22 C 0.288 3.712 23 O -0.429 6.429 24 C -0.177 4.177 25 C 0.004 3.996 26 N -0.124 5.124 27 C -0.151 4.151 28 C -0.246 4.246 29 C -0.245 4.245 30 C -0.158 4.158 31 H 0.078 0.922 32 H 0.030 0.970 33 H 0.023 0.977 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.115 0.885 38 H 0.083 0.917 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.085 0.915 42 H 0.120 0.880 43 H 0.090 0.910 44 H 0.085 0.915 45 H 0.135 0.865 46 H 0.137 0.863 47 H 0.127 0.873 48 H 0.106 0.894 49 H 0.117 0.883 50 H 0.196 0.804 51 H 0.162 0.838 52 H 0.160 0.840 53 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 0.547 -16.771 -11.316 20.239 hybrid contribution 0.196 -0.828 0.375 0.930 sum 0.744 -17.599 -10.941 20.736 Atomic orbital electron populations 1.70856 1.07130 1.30824 1.48972 1.27527 0.97083 1.04851 0.95916 0.82834 0.73855 0.71990 0.77231 1.21173 1.20742 1.20127 1.19612 0.91099 0.85870 1.50831 0.95664 1.44744 1.51016 1.09854 1.28170 1.21546 0.92553 0.94541 0.90299 1.22684 1.01237 0.94714 0.97878 1.22963 0.98246 0.99221 0.94118 1.21768 0.98231 0.85690 0.88633 0.93326 1.21396 0.95337 0.85542 0.92649 0.95193 1.21856 0.95126 1.00915 0.97720 1.21506 1.00942 0.98529 0.94519 1.21859 0.95561 0.96441 1.02070 1.22029 0.94878 1.04215 0.80970 1.48290 1.54778 1.16117 1.14251 1.20887 0.78200 0.84192 0.87887 1.90693 1.53648 1.80254 1.18321 1.21942 1.04144 0.92680 0.98959 1.21486 1.01660 0.85047 0.91395 1.44283 1.13476 1.16997 1.37642 1.22258 0.99365 0.89119 1.04370 1.21183 0.96105 1.02232 1.05071 1.21174 0.99779 0.97154 1.06360 1.22182 0.90590 1.01555 1.01478 0.92188 0.97040 0.97692 0.90025 0.92344 0.92041 0.88470 0.91703 0.93895 0.93471 0.91516 0.87982 0.90957 0.91463 0.86456 0.86293 0.87326 0.89355 0.88342 0.80357 0.83784 0.84008 0.81223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.14 13.50 21.65 0.29 -56.85 16 2 C -0.05 -3.17 5.35 84.86 0.45 -2.72 16 3 Si 1.12 52.16 29.94 68.60 2.05 54.21 16 4 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 6 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.34 -20.23 9.41 84.03 0.79 -19.44 16 8 H 0.03 1.56 7.86 -2.91 -0.02 1.54 16 9 N -0.61 -32.47 2.36 -668.70 -1.58 -34.06 16 10 C 0.14 6.75 6.13 86.78 0.53 7.28 16 11 C -0.13 -4.99 7.07 31.91 0.23 -4.77 16 12 C -0.11 -4.12 5.14 31.78 0.16 -3.95 16 13 C 0.16 7.25 2.28 45.34 0.10 7.35 16 14 H 0.05 2.45 5.79 -16.40 -0.09 2.35 16 15 C 0.16 6.20 2.70 44.98 0.12 6.32 16 16 H 0.03 1.45 7.82 -2.38 -0.02 1.43 16 17 C -0.12 -4.47 4.97 30.69 0.15 -4.32 16 18 C -0.12 -3.39 5.88 30.63 0.18 -3.21 16 19 C -0.12 -2.35 6.08 30.67 0.19 -2.16 16 20 C 0.10 1.97 6.34 86.36 0.55 2.52 16 21 N -0.60 -17.10 2.95 -795.02 -2.35 -19.45 16 22 C 0.50 13.29 7.24 87.66 0.63 13.92 16 23 O -0.55 -18.68 8.81 -3.03 -0.03 -18.70 16 24 C -0.14 -2.27 4.46 29.85 0.13 -2.14 16 25 C 0.13 2.23 5.46 86.38 0.47 2.70 16 26 N -0.45 -8.05 2.75 -524.48 -1.44 -9.49 16 27 C -0.02 -0.37 11.43 83.21 0.95 0.59 16 28 C -0.22 -4.01 10.86 22.14 0.24 -3.77 16 29 C -0.22 -4.14 10.86 22.14 0.24 -3.90 16 30 C -0.03 -0.53 11.43 83.21 0.95 0.42 16 31 H 0.27 16.22 4.23 -92.70 -0.39 15.83 16 32 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.01 0.28 6.49 -2.39 -0.02 0.27 16 34 H 0.08 2.73 8.14 -2.38 -0.02 2.71 16 35 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.06 2.23 5.19 -2.38 -0.01 2.22 16 37 H 0.10 3.52 5.62 -6.47 -0.04 3.48 16 38 H 0.06 2.34 5.52 -2.39 -0.01 2.33 16 39 H 0.04 2.07 6.57 -2.39 -0.02 2.06 16 40 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.12 1.42 5.90 -2.39 -0.01 1.41 16 46 H 0.12 1.45 7.38 -2.39 -0.02 1.43 16 47 H 0.11 1.61 8.13 -2.39 -0.02 1.60 16 48 H 0.09 1.79 7.92 -2.39 -0.02 1.78 16 49 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 50 H 0.18 2.14 8.06 -2.91 -0.02 2.12 16 51 H 0.14 2.13 8.06 -2.91 -0.02 2.10 16 52 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 53 H 0.17 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -73.38 394.66 5.19 -68.19 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: 1.16 Total: 25.45 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: 7.08 Total: -9.30 kcal Atomic # 7 Polarization: -114.77 SS G_CDS: -5.08 Total: -119.85 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.03 Total: -18.70 kcal Atomic # 14 Polarization: 52.16 SS G_CDS: 2.05 Total: 54.21 kcal Total: -73.38 5.19 -68.19 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025280206.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.627 kcal (2) G-P(sol) polarization free energy of solvation -73.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds