Wall clock time and date at job start Wed Apr 1 2020 03:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46502 * 119.99906 * 2 1 4 4 C 1.38507 * 119.99736 * 179.97438 * 2 1 3 5 5 C 1.39603 * 120.05038 * 5.02645 * 4 2 1 6 6 C 1.38285 * 118.02640 * 179.70382 * 5 4 2 7 7 C 1.40071 * 117.99269 * 0.51897 * 6 5 4 8 8 C 1.47864 * 120.09266 * 179.73467 * 7 6 5 9 9 O 1.21548 * 120.00037 * 359.73259 * 8 7 6 10 10 N 1.34776 * 119.99575 * 179.72768 * 8 7 6 11 11 C 1.49212 * 126.06141 * 359.96763 * 10 8 7 12 12 C 1.50351 * 104.86393 * 172.96855 * 11 10 8 13 13 H 1.09003 * 110.05207 * 278.93742 * 12 11 10 14 14 C 1.51000 * 125.55340 * 144.30755 * 12 11 10 15 15 C 1.56398 * 101.59328 * 203.98719 * 14 12 11 16 16 C 1.55947 * 105.78962 * 25.02347 * 15 14 12 17 17 H 1.09001 * 110.60986 * 126.26729 * 16 15 14 18 18 N 1.46504 * 110.48996 * 248.87230 * 16 15 14 19 19 C 1.36943 * 119.99781 * 269.73257 * 18 16 15 20 20 H 1.08002 * 119.99788 * 359.97438 * 19 18 16 21 21 C 1.38811 * 119.99622 * 180.27904 * 19 18 16 22 22 N 1.31622 * 119.99400 * 179.72313 * 21 19 18 23 23 Si 1.86800 * 120.00144 * 359.72086 * 21 19 18 24 24 H 1.48506 * 109.46719 * 90.00417 * 23 21 19 25 25 H 1.48501 * 109.46793 * 210.00071 * 23 21 19 26 26 H 1.48489 * 109.47333 * 330.00315 * 23 21 19 27 27 C 1.50293 * 104.15284 * 7.53587 * 16 15 14 28 28 H 1.09001 * 109.99421 * 79.59605 * 27 16 15 29 29 C 1.49702 * 126.05605 * 180.02562 * 10 8 7 30 30 N 1.32757 * 119.80829 * 359.47194 * 7 6 5 31 31 N 1.28356 * 122.10502 * 0.26627 * 30 7 6 32 32 H 1.08998 * 109.47008 * 270.00381 * 1 2 3 33 33 H 1.08999 * 109.46888 * 30.00020 * 1 2 3 34 34 H 1.08999 * 109.47272 * 150.00271 * 1 2 3 35 35 H 1.08995 * 109.46897 * 270.00068 * 3 2 1 36 36 H 1.09002 * 109.46970 * 30.00216 * 3 2 1 37 37 H 1.08995 * 109.46783 * 150.00182 * 3 2 1 38 38 H 1.08001 * 120.98089 * 359.95327 * 5 4 2 39 39 H 1.07997 * 120.99974 * 180.26569 * 6 5 4 40 40 H 1.09007 * 110.35890 * 291.80921 * 11 10 8 41 41 H 1.08995 * 110.36394 * 54.00981 * 11 10 8 42 42 H 1.08995 * 111.00227 * 322.06992 * 14 12 11 43 43 H 1.08997 * 111.00150 * 85.87477 * 14 12 11 44 44 H 1.09000 * 110.19064 * 265.93949 * 15 14 12 45 45 H 1.09000 * 110.18518 * 144.09803 * 15 14 12 46 46 H 0.97000 * 120.00410 * 89.73582 * 18 16 15 47 47 H 0.97009 * 119.99492 * 179.97438 * 22 21 19 48 48 H 1.09000 * 110.84547 * 36.63864 * 29 10 8 49 49 H 1.08998 * 111.01935 * 273.10591 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1575 -1.1995 0.0005 5 6 1.4645 -2.4068 -0.1048 6 6 2.1981 -3.5791 -0.1063 7 6 3.5907 -3.4833 0.0092 8 6 4.4198 -4.7076 0.0186 9 8 3.8926 -5.7993 -0.0691 10 7 5.7601 -4.6130 0.1243 11 6 6.5451 -3.3492 0.2382 12 6 7.9563 -3.7944 0.5045 13 1 8.0794 -4.0344 1.5607 14 6 9.2029 -3.1176 -0.0131 15 6 10.2344 -4.2928 0.0177 16 6 9.3910 -5.6004 -0.0861 17 1 9.7464 -6.2219 -0.9081 18 7 9.4398 -6.3437 1.1754 19 6 10.4163 -7.2817 1.3801 20 1 11.1502 -7.4738 0.6113 21 6 10.4591 -7.9901 2.5731 22 7 11.3944 -8.8955 2.7676 23 14 9.1893 -7.6582 3.9024 24 1 8.0190 -8.5503 3.7027 25 1 9.7888 -7.9192 5.2357 26 1 8.7508 -6.2417 3.8255 27 6 7.9944 -5.1163 -0.3579 28 1 7.8877 -4.8586 -1.4117 29 6 6.7251 -5.7572 0.1469 30 7 4.1645 -2.2900 0.1049 31 7 3.4823 -1.2027 0.1007 32 1 -0.3633 0.0001 1.0276 33 1 -0.3633 0.8900 -0.5138 34 1 -0.3634 -0.8900 -0.5138 35 1 2.3792 1.5834 -1.0276 36 1 1.6084 2.0284 0.5139 37 1 3.1499 1.1384 0.5138 38 1 0.3878 -2.4245 -0.1868 39 1 1.7115 -4.5396 -0.1898 40 1 6.4946 -2.7861 -0.6938 41 1 6.1735 -2.7452 1.0659 42 1 9.0561 -2.7531 -1.0297 43 1 9.5117 -2.3086 0.6489 44 1 10.7929 -4.2787 0.9537 45 1 10.9164 -4.2169 -0.8291 46 1 8.7805 -6.1715 1.8657 47 1 11.4245 -9.3903 3.6014 48 1 6.3992 -6.5528 -0.5231 49 1 6.8586 -6.1361 1.1602 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026402032.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:36 Heat of formation + Delta-G solvation = 86.127847 kcal Electronic energy + Delta-G solvation = -30513.076408 eV Core-core repulsion = 26477.568641 eV Total energy + Delta-G solvation = -4035.507767 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.44263 -40.38306 -38.64100 -37.43519 -35.32509 -33.45885 -33.30318 -32.03759 -31.06832 -29.45925 -28.99617 -28.71423 -26.54117 -25.55475 -24.85155 -23.45689 -22.83195 -22.35146 -20.16692 -19.91905 -18.98249 -18.14813 -17.91361 -17.66715 -17.09059 -16.22385 -15.95376 -15.49085 -15.21810 -15.01556 -14.69882 -14.50471 -14.47107 -13.99454 -13.91697 -13.74068 -13.57848 -13.18028 -12.91861 -12.71890 -12.60357 -12.49042 -12.38588 -12.04335 -11.86107 -11.72695 -11.25803 -11.06251 -11.03234 -10.85532 -10.64703 -10.54226 -10.36161 -10.31585 -10.07348 -9.94677 -9.91811 -9.58726 -9.51815 -8.90315 -8.58950 -8.32274 -7.24180 -5.74278 -3.09560 0.43872 0.55311 2.22902 2.64188 2.83816 3.40306 3.43483 3.48865 3.54305 3.80069 4.08637 4.13569 4.27532 4.35337 4.52464 4.61857 4.69442 4.73858 4.80483 4.97812 5.02358 5.09752 5.15290 5.23714 5.30493 5.37259 5.44968 5.52745 5.56211 5.57313 5.63698 5.70451 5.75321 5.84659 5.97536 6.02238 6.11947 6.22616 6.26542 6.36273 6.39229 6.43567 6.47182 6.57524 6.61577 6.77620 7.01124 7.52738 8.02733 8.05980 8.44104 8.45148 9.23193 9.95929 10.15306 11.44078 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.017755 B = 0.002568 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.655641 B =10901.723527 C =11525.406682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.602 5.602 3 C 0.092 3.908 4 C 0.352 3.648 5 C -0.192 4.192 6 C -0.022 4.022 7 C -0.027 4.027 8 C 0.592 3.408 9 O -0.541 6.541 10 N -0.606 5.606 11 C 0.135 3.865 12 C -0.132 4.132 13 H 0.082 0.918 14 C -0.095 4.095 15 C -0.144 4.144 16 C 0.201 3.799 17 H 0.066 0.934 18 N -0.743 5.743 19 C -0.241 4.241 20 H 0.092 0.908 21 C 0.006 3.994 22 N -0.933 5.933 23 Si 0.878 3.122 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.278 1.278 27 C -0.126 4.126 28 H 0.081 0.919 29 C 0.131 3.869 30 N -0.158 5.158 31 N -0.305 5.305 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.153 0.847 39 H 0.161 0.839 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.076 0.924 45 H 0.057 0.943 46 H 0.360 0.640 47 H 0.259 0.741 48 H 0.083 0.917 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.787 22.090 -8.122 32.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.315 5.315 3 C -0.050 4.050 4 C 0.112 3.888 5 C -0.224 4.224 6 C -0.051 4.051 7 C -0.178 4.178 8 C 0.378 3.622 9 O -0.418 6.418 10 N -0.339 5.339 11 C 0.013 3.987 12 C -0.152 4.152 13 H 0.101 0.899 14 C -0.133 4.133 15 C -0.185 4.185 16 C 0.090 3.910 17 H 0.084 0.916 18 N -0.385 5.385 19 C -0.371 4.371 20 H 0.109 0.891 21 C -0.190 4.190 22 N -0.581 5.581 23 Si 0.709 3.291 24 H -0.210 1.210 25 H -0.218 1.218 26 H -0.204 1.204 27 C -0.146 4.146 28 H 0.099 0.901 29 C 0.010 3.990 30 N -0.005 5.005 31 N -0.159 5.159 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.170 0.830 39 H 0.178 0.822 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.095 0.905 45 H 0.076 0.924 46 H 0.194 0.806 47 H 0.069 0.931 48 H 0.101 0.899 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -21.701 22.368 -8.047 32.188 hybrid contribution -2.269 -0.509 1.013 2.537 sum -23.970 21.859 -7.033 33.194 Atomic orbital electron populations 1.21849 0.77920 1.03561 1.02164 1.46108 1.05502 1.03022 1.76879 1.21736 0.97943 0.83373 1.01993 1.20152 0.91534 0.86999 0.90125 1.21803 1.02054 0.91063 1.07528 1.22160 0.92832 1.00069 0.90030 1.22435 0.93412 0.94428 1.07523 1.17047 0.80754 0.86927 0.77497 1.90802 1.71903 1.27252 1.51798 1.49687 1.04660 1.09430 1.70085 1.21350 0.89750 0.85054 1.02505 1.22342 0.93536 0.97970 1.01304 0.89920 1.21708 0.93766 0.97663 1.00171 1.23811 0.97789 0.94566 1.02299 1.20107 0.89674 0.91327 0.89875 0.91608 1.42811 1.35267 1.45523 1.14946 1.19087 1.05761 1.10918 1.01341 0.89059 1.24650 0.98167 0.98473 0.97712 1.69700 1.34979 1.27401 1.26042 0.86647 0.82023 0.77828 0.82629 1.20956 1.21765 1.20400 1.22537 0.95278 0.96969 0.99801 0.90083 1.21469 0.86943 0.88135 1.02431 1.73241 1.29393 0.94376 1.03441 1.73187 1.03473 1.19866 1.19378 0.92284 0.90350 0.90803 0.92717 0.91243 0.89648 0.82992 0.82175 0.90839 0.90088 0.91815 0.91919 0.90506 0.92415 0.80601 0.93106 0.89867 0.90406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.28 10.29 59.85 0.62 0.90 16 2 N -0.60 -4.08 3.38 -189.55 -0.64 -4.72 16 3 C 0.09 0.51 10.50 59.85 0.63 1.14 16 4 C 0.35 3.40 7.44 -154.94 -1.15 2.24 16 5 C -0.19 -1.60 9.33 -39.05 -0.36 -1.96 16 6 C -0.02 -0.24 9.71 -38.88 -0.38 -0.61 16 7 C -0.03 -0.37 6.80 -82.84 -0.56 -0.93 16 8 C 0.59 9.53 7.86 -12.32 -0.10 9.43 16 9 O -0.54 -10.00 16.72 5.32 0.09 -9.91 16 10 N -0.61 -9.50 3.43 -172.68 -0.59 -10.10 16 11 C 0.14 1.86 5.26 -3.86 -0.02 1.84 16 12 C -0.13 -1.92 2.73 -90.27 -0.25 -2.17 16 13 H 0.08 1.37 7.64 -51.93 -0.40 0.97 16 14 C -0.09 -1.26 6.71 -25.91 -0.17 -1.43 16 15 C -0.14 -2.32 6.73 -23.33 -0.16 -2.48 16 16 C 0.20 3.69 3.46 -67.70 -0.23 3.46 16 17 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 18 N -0.74 -16.98 4.61 -53.20 -0.25 -17.22 16 19 C -0.24 -6.66 10.44 -15.06 -0.16 -6.81 16 20 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 21 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 22 N -0.93 -29.30 13.97 55.49 0.78 -28.52 16 23 Si 0.88 22.36 27.73 -169.99 -4.71 17.65 16 24 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 26 H -0.28 -6.68 6.52 56.52 0.37 -6.31 16 27 C -0.13 -1.98 2.59 -90.35 -0.23 -2.21 16 28 H 0.08 1.17 8.13 -51.93 -0.42 0.74 16 29 C 0.13 2.21 6.53 -3.32 -0.02 2.18 16 30 N -0.16 -2.12 8.16 33.32 0.27 -1.85 16 31 N -0.31 -3.72 10.25 31.21 0.32 -3.40 16 32 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.08 0.12 8.07 -51.93 -0.42 -0.30 16 34 H 0.07 0.17 6.01 -51.93 -0.31 -0.14 16 35 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.07 0.23 8.07 -51.93 -0.42 -0.19 16 37 H 0.08 0.61 7.31 -51.93 -0.38 0.23 16 38 H 0.15 0.73 6.11 -52.49 -0.32 0.41 16 39 H 0.16 1.49 7.71 -52.49 -0.40 1.09 16 40 H 0.07 0.96 7.93 -51.93 -0.41 0.55 16 41 H 0.08 1.12 7.14 -51.93 -0.37 0.75 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.08 1.42 7.98 -51.93 -0.41 1.00 16 45 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.36 8.26 4.06 -40.82 -0.17 8.10 16 47 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 48 H 0.08 1.43 8.09 -51.93 -0.42 1.00 16 49 H 0.08 1.45 6.96 -51.93 -0.36 1.09 16 LS Contribution 387.25 15.07 5.84 5.84 Total: -1.00 -34.42 387.25 -8.89 -43.32 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -7.34 Total: 6.27 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -2.65 Total: 2.65 kcal Atomic # 7 Polarization: -65.70 SS G_CDS: -0.11 Total: -65.81 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.71 Total: 17.65 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.42 -8.89 -43.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026402032.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.443 kcal (2) G-P(sol) polarization free energy of solvation -34.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds