Wall clock time and date at job start Wed Apr 1 2020 03:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46502 * 119.99906 * 2 1 4 4 C 1.38507 * 119.99736 * 179.97438 * 2 1 3 5 5 C 1.39603 * 120.05038 * 5.02645 * 4 2 1 6 6 C 1.38285 * 118.02640 * 179.70382 * 5 4 2 7 7 C 1.40071 * 117.99269 * 0.51897 * 6 5 4 8 8 C 1.47864 * 120.09266 * 179.73467 * 7 6 5 9 9 O 1.21548 * 120.00037 * 359.73259 * 8 7 6 10 10 N 1.34776 * 119.99575 * 179.72768 * 8 7 6 11 11 C 1.49212 * 126.06141 * 359.96763 * 10 8 7 12 12 C 1.50351 * 104.86393 * 172.96855 * 11 10 8 13 13 H 1.09003 * 110.05207 * 278.93742 * 12 11 10 14 14 C 1.51000 * 125.55340 * 144.30755 * 12 11 10 15 15 C 1.56398 * 101.59328 * 203.98719 * 14 12 11 16 16 C 1.55947 * 105.78962 * 25.02347 * 15 14 12 17 17 H 1.09001 * 110.60986 * 126.26729 * 16 15 14 18 18 N 1.46504 * 110.48996 * 248.87230 * 16 15 14 19 19 C 1.36943 * 119.99781 * 269.73257 * 18 16 15 20 20 H 1.08002 * 119.99788 * 359.97438 * 19 18 16 21 21 C 1.38811 * 119.99622 * 180.27904 * 19 18 16 22 22 N 1.31622 * 119.99400 * 179.72313 * 21 19 18 23 23 Si 1.86800 * 120.00144 * 359.72086 * 21 19 18 24 24 H 1.48506 * 109.46719 * 90.00417 * 23 21 19 25 25 H 1.48501 * 109.46793 * 210.00071 * 23 21 19 26 26 H 1.48489 * 109.47333 * 330.00315 * 23 21 19 27 27 C 1.50293 * 104.15284 * 7.53587 * 16 15 14 28 28 H 1.09001 * 109.99421 * 79.59605 * 27 16 15 29 29 C 1.49702 * 126.05605 * 180.02562 * 10 8 7 30 30 N 1.32757 * 119.80829 * 359.47194 * 7 6 5 31 31 N 1.28356 * 122.10502 * 0.26627 * 30 7 6 32 32 H 1.08998 * 109.47008 * 270.00381 * 1 2 3 33 33 H 1.08999 * 109.46888 * 30.00020 * 1 2 3 34 34 H 1.08999 * 109.47272 * 150.00271 * 1 2 3 35 35 H 1.08995 * 109.46897 * 270.00068 * 3 2 1 36 36 H 1.09002 * 109.46970 * 30.00216 * 3 2 1 37 37 H 1.08995 * 109.46783 * 150.00182 * 3 2 1 38 38 H 1.08001 * 120.98089 * 359.95327 * 5 4 2 39 39 H 1.07997 * 120.99974 * 180.26569 * 6 5 4 40 40 H 1.09007 * 110.35890 * 291.80921 * 11 10 8 41 41 H 1.08995 * 110.36394 * 54.00981 * 11 10 8 42 42 H 1.08995 * 111.00227 * 322.06992 * 14 12 11 43 43 H 1.08997 * 111.00150 * 85.87477 * 14 12 11 44 44 H 1.09000 * 110.19064 * 265.93949 * 15 14 12 45 45 H 1.09000 * 110.18518 * 144.09803 * 15 14 12 46 46 H 0.97000 * 120.00410 * 89.73582 * 18 16 15 47 47 H 0.97009 * 119.99492 * 179.97438 * 22 21 19 48 48 H 1.09000 * 110.84547 * 36.63864 * 29 10 8 49 49 H 1.08998 * 111.01935 * 273.10591 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1575 -1.1995 0.0005 5 6 1.4645 -2.4068 -0.1048 6 6 2.1981 -3.5791 -0.1063 7 6 3.5907 -3.4833 0.0092 8 6 4.4198 -4.7076 0.0186 9 8 3.8926 -5.7993 -0.0691 10 7 5.7601 -4.6130 0.1243 11 6 6.5451 -3.3492 0.2382 12 6 7.9563 -3.7944 0.5045 13 1 8.0794 -4.0344 1.5607 14 6 9.2029 -3.1176 -0.0131 15 6 10.2344 -4.2928 0.0177 16 6 9.3910 -5.6004 -0.0861 17 1 9.7464 -6.2219 -0.9081 18 7 9.4398 -6.3437 1.1754 19 6 10.4163 -7.2817 1.3801 20 1 11.1502 -7.4738 0.6113 21 6 10.4591 -7.9901 2.5731 22 7 11.3944 -8.8955 2.7676 23 14 9.1893 -7.6582 3.9024 24 1 8.0190 -8.5503 3.7027 25 1 9.7888 -7.9192 5.2357 26 1 8.7508 -6.2417 3.8255 27 6 7.9944 -5.1163 -0.3579 28 1 7.8877 -4.8586 -1.4117 29 6 6.7251 -5.7572 0.1469 30 7 4.1645 -2.2900 0.1049 31 7 3.4823 -1.2027 0.1007 32 1 -0.3633 0.0001 1.0276 33 1 -0.3633 0.8900 -0.5138 34 1 -0.3634 -0.8900 -0.5138 35 1 2.3792 1.5834 -1.0276 36 1 1.6084 2.0284 0.5139 37 1 3.1499 1.1384 0.5138 38 1 0.3878 -2.4245 -0.1868 39 1 1.7115 -4.5396 -0.1898 40 1 6.4946 -2.7861 -0.6938 41 1 6.1735 -2.7452 1.0659 42 1 9.0561 -2.7531 -1.0297 43 1 9.5117 -2.3086 0.6489 44 1 10.7929 -4.2787 0.9537 45 1 10.9164 -4.2169 -0.8291 46 1 8.7805 -6.1715 1.8657 47 1 11.4245 -9.3903 3.6014 48 1 6.3992 -6.5528 -0.5231 49 1 6.8586 -6.1361 1.1602 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026402032.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:35 Heat of formation + Delta-G solvation = 63.587959 kcal Electronic energy + Delta-G solvation = -30514.053811 eV Core-core repulsion = 26477.568641 eV Total energy + Delta-G solvation = -4036.485170 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.32358 -41.56744 -39.84119 -38.07228 -36.82322 -35.10681 -34.18890 -33.00105 -32.85888 -30.71234 -30.11858 -29.37250 -27.44208 -26.84309 -25.64098 -24.80599 -24.42470 -23.16869 -21.27747 -21.08392 -20.54475 -19.77649 -18.92410 -18.52974 -18.08102 -17.32081 -16.95198 -16.68663 -16.46269 -16.05142 -15.78729 -15.61281 -15.46128 -15.28352 -15.14616 -14.77400 -14.64506 -14.41551 -14.06774 -13.89246 -13.51262 -13.44815 -13.35182 -13.20157 -13.02771 -12.88252 -12.75010 -12.54889 -12.28848 -12.22542 -11.93851 -11.89872 -11.74541 -11.60957 -11.43490 -11.33015 -11.14210 -10.99247 -10.91631 -10.67826 -9.83131 -9.27142 -8.92848 -8.00810 -5.31764 -0.41575 -0.19245 1.34437 1.37227 1.42615 1.58867 1.61434 1.77613 2.47072 2.62849 2.84890 3.01177 3.31353 3.42279 3.52886 3.59674 3.64880 3.83164 3.89058 3.92726 4.17313 4.19672 4.30614 4.40889 4.43536 4.46142 4.48825 4.57182 4.59138 4.66745 4.71431 4.77792 4.78358 4.83544 4.87232 4.93556 4.94650 5.00101 5.03021 5.08359 5.21333 5.22756 5.35958 5.43972 5.63426 5.83085 5.91713 5.98814 6.24595 6.33266 6.86273 7.10077 7.61085 7.87663 8.04903 9.20990 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.017755 B = 0.002568 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.655641 B =10901.723527 C =11525.406682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.596 5.596 3 C 0.087 3.913 4 C 0.346 3.654 5 C -0.174 4.174 6 C -0.030 4.030 7 C -0.051 4.051 8 C 0.589 3.411 9 O -0.575 6.575 10 N -0.608 5.608 11 C 0.146 3.854 12 C -0.121 4.121 13 H 0.060 0.940 14 C -0.081 4.081 15 C -0.138 4.138 16 C 0.190 3.810 17 H 0.057 0.943 18 N -0.745 5.745 19 C -0.217 4.217 20 H 0.064 0.936 21 C -0.062 4.062 22 N -0.983 5.983 23 Si 0.941 3.059 24 H -0.285 1.285 25 H -0.295 1.295 26 H -0.257 1.257 27 C -0.122 4.122 28 H 0.104 0.896 29 C 0.130 3.870 30 N -0.170 5.170 31 N -0.328 5.328 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.060 0.940 36 H 0.096 0.904 37 H 0.066 0.934 38 H 0.192 0.808 39 H 0.168 0.832 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.077 0.923 44 H 0.051 0.949 45 H 0.074 0.926 46 H 0.362 0.638 47 H 0.256 0.744 48 H 0.074 0.926 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.944 25.771 -8.944 37.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.307 5.307 3 C -0.055 4.055 4 C 0.104 3.896 5 C -0.206 4.206 6 C -0.058 4.058 7 C -0.202 4.202 8 C 0.376 3.624 9 O -0.454 6.454 10 N -0.340 5.340 11 C 0.026 3.974 12 C -0.140 4.140 13 H 0.079 0.921 14 C -0.119 4.119 15 C -0.178 4.178 16 C 0.081 3.919 17 H 0.075 0.925 18 N -0.389 5.389 19 C -0.348 4.348 20 H 0.082 0.918 21 C -0.253 4.253 22 N -0.634 5.634 23 Si 0.769 3.231 24 H -0.211 1.211 25 H -0.222 1.222 26 H -0.182 1.182 27 C -0.141 4.141 28 H 0.122 0.878 29 C 0.009 3.991 30 N -0.017 5.017 31 N -0.183 5.183 32 H 0.087 0.913 33 H 0.118 0.882 34 H 0.105 0.895 35 H 0.078 0.922 36 H 0.114 0.886 37 H 0.085 0.915 38 H 0.209 0.791 39 H 0.186 0.814 40 H 0.106 0.894 41 H 0.100 0.900 42 H 0.110 0.890 43 H 0.096 0.904 44 H 0.070 0.930 45 H 0.093 0.907 46 H 0.195 0.805 47 H 0.065 0.935 48 H 0.092 0.908 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -24.909 26.157 -8.906 37.202 hybrid contribution -1.386 -1.503 1.157 2.349 sum -26.295 24.654 -7.749 36.869 Atomic orbital electron populations 1.22174 0.75492 1.05323 1.03361 1.46521 1.07006 1.02374 1.74752 1.21854 0.97693 0.83478 1.02485 1.20445 0.91086 0.88639 0.89408 1.22150 1.03690 0.89520 1.05280 1.22286 0.91823 1.01386 0.90311 1.22148 0.94247 0.93461 1.10371 1.17497 0.80810 0.87546 0.76530 1.90765 1.72513 1.28759 1.53405 1.49739 1.04745 1.09512 1.70041 1.21326 0.88616 0.84227 1.03280 1.22306 0.94613 0.97304 0.99765 0.92104 1.21662 0.91488 0.96573 1.02154 1.23631 0.98227 0.94267 1.01691 1.20387 0.92096 0.91939 0.87488 0.92525 1.42816 1.34126 1.45241 1.16674 1.19071 1.05194 1.10548 1.00012 0.91824 1.25344 1.00531 0.99110 1.00314 1.69861 1.37488 1.29358 1.26697 0.85622 0.79321 0.78668 0.79464 1.21140 1.22227 1.18194 1.22380 0.93140 0.97312 1.01300 0.87804 1.21317 0.88088 0.88785 1.00937 1.73130 1.30276 0.94480 1.03782 1.73093 1.05071 1.19252 1.20929 0.91261 0.88229 0.89531 0.92155 0.88568 0.91517 0.79080 0.81440 0.89370 0.89993 0.89044 0.90386 0.93029 0.90734 0.80490 0.93539 0.90755 0.92655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.16 10.29 127.77 1.31 1.47 16 2 N -0.60 -6.04 3.38 -753.60 -2.54 -8.58 16 3 C 0.09 0.72 10.50 127.77 1.34 2.06 16 4 C 0.35 5.78 7.44 133.21 0.99 6.77 16 5 C -0.17 -2.37 9.33 22.61 0.21 -2.16 16 6 C -0.03 -0.59 9.71 22.73 0.22 -0.37 16 7 C -0.05 -1.34 6.80 42.00 0.29 -1.06 16 8 C 0.59 19.01 7.86 86.79 0.68 19.69 16 9 O -0.58 -21.69 16.72 -3.87 -0.06 -21.75 16 10 N -0.61 -18.90 3.43 -818.51 -2.80 -21.71 16 11 C 0.15 3.81 5.26 85.00 0.45 4.26 16 12 C -0.12 -3.30 2.73 -10.56 -0.03 -3.33 16 13 H 0.06 1.95 7.64 -2.39 -0.02 1.93 16 14 C -0.08 -1.91 6.71 31.13 0.21 -1.70 16 15 C -0.14 -4.25 6.73 32.80 0.22 -4.03 16 16 C 0.19 6.91 3.46 45.14 0.16 7.07 16 17 H 0.06 2.16 8.09 -2.39 -0.02 2.14 16 18 N -0.75 -34.47 4.61 -322.23 -1.49 -35.96 16 19 C -0.22 -12.31 10.44 84.03 0.88 -11.43 16 20 H 0.06 3.91 8.06 -2.91 -0.02 3.89 16 21 C -0.06 -3.70 5.50 84.86 0.47 -3.23 16 22 N -0.98 -63.89 13.97 21.65 0.30 -63.58 16 23 Si 0.94 47.36 27.73 68.60 1.90 49.27 16 24 H -0.28 -14.31 7.11 99.48 0.71 -13.61 16 25 H -0.30 -15.01 7.11 99.48 0.71 -14.30 16 26 H -0.26 -11.88 6.52 99.48 0.65 -11.23 16 27 C -0.12 -3.71 2.59 -10.62 -0.03 -3.73 16 28 H 0.10 2.76 8.13 -2.39 -0.02 2.74 16 29 C 0.13 4.43 6.53 85.07 0.56 4.98 16 30 N -0.17 -4.38 8.16 -48.50 -0.40 -4.78 16 31 N -0.33 -7.50 10.25 -55.17 -0.57 -8.06 16 32 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 33 H 0.10 -0.16 8.07 -2.39 -0.02 -0.18 16 34 H 0.09 -0.02 6.01 -2.39 -0.01 -0.03 16 35 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.10 0.28 8.07 -2.39 -0.02 0.26 16 37 H 0.07 0.84 7.31 -2.39 -0.02 0.82 16 38 H 0.19 0.95 6.11 -2.91 -0.02 0.93 16 39 H 0.17 2.94 7.71 -2.91 -0.02 2.91 16 40 H 0.09 2.08 7.93 -2.38 -0.02 2.06 16 41 H 0.08 2.17 7.14 -2.39 -0.02 2.15 16 42 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.05 1.87 7.98 -2.39 -0.02 1.85 16 45 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.36 16.63 4.06 -92.71 -0.38 16.25 16 47 H 0.26 15.95 8.31 -92.70 -0.77 15.18 16 48 H 0.07 2.62 8.09 -2.39 -0.02 2.60 16 49 H 0.06 2.11 6.96 -2.39 -0.02 2.10 16 Total: -1.00 -78.36 387.25 2.81 -75.56 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: 0.54 Total: 24.34 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: 7.92 Total: 15.26 kcal Atomic # 7 Polarization: -135.17 SS G_CDS: -7.49 Total: -142.67 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.06 Total: -21.75 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 1.90 Total: 49.27 kcal Total: -78.36 2.81 -75.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026402032.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.145 kcal (2) G-P(sol) polarization free energy of solvation -78.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds