Wall clock time and date at job start Wed Apr 1 2020 02:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.47838 * 111.00145 * 2 1 4 4 C 1.54905 * 104.80051 * 146.36425 * 3 2 1 5 5 C 1.55144 * 101.64988 * 322.92799 * 4 3 2 6 6 C 1.47450 * 110.99889 * 120.84223 * 2 1 3 7 7 H 1.09000 * 109.88840 * 117.17541 * 6 2 1 8 8 C 1.50693 * 109.89023 * 356.14957 * 6 2 1 9 9 C 1.35365 * 126.38835 * 117.39278 * 8 6 2 10 10 C 1.41504 * 105.50328 * 179.97438 * 9 8 6 11 11 C 1.47714 * 126.51620 * 180.26220 * 10 9 8 12 12 O 1.21568 * 119.99762 * 359.71484 * 11 10 9 13 13 N 1.34775 * 119.99829 * 179.71168 * 11 10 9 14 14 C 1.47868 * 126.94641 * 0.03217 * 13 11 10 15 15 C 1.56014 * 105.10463 * 181.97691 * 14 13 11 16 16 H 1.09003 * 116.25237 * 158.83338 * 15 14 13 17 17 C 1.57082 * 99.60728 * 32.80245 * 15 14 13 18 18 C 1.49293 * 126.94049 * 179.70683 * 13 11 10 19 19 H 1.09000 * 116.15458 * 16.73563 * 18 13 11 20 20 C 1.56018 * 104.09302 * 246.72370 * 18 13 11 21 21 N 1.47358 * 105.15048 * 288.60904 * 20 18 13 22 22 C 1.36935 * 126.79539 * 182.06014 * 21 20 18 23 23 H 1.07997 * 120.00574 * 180.28029 * 22 21 20 24 24 C 1.38813 * 119.99640 * 0.28600 * 22 21 20 25 25 N 1.31626 * 120.00293 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00004 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47243 * 359.97438 * 26 24 22 28 28 H 1.48502 * 109.46926 * 120.00228 * 26 24 22 29 29 H 1.48506 * 109.47051 * 239.99964 * 26 24 22 30 30 N 1.31801 * 106.96363 * 0.02562 * 10 9 8 31 31 N 1.28469 * 110.07848 * 0.02562 * 30 10 9 32 32 H 0.96991 * 124.88538 * 179.97438 * 31 30 10 33 33 H 1.08999 * 109.47331 * 306.02664 * 1 2 3 34 34 H 1.09000 * 109.47451 * 66.02759 * 1 2 3 35 35 H 1.09008 * 109.47391 * 186.02719 * 1 2 3 36 36 H 1.09000 * 110.37480 * 265.19534 * 3 2 1 37 37 H 1.09008 * 110.37422 * 27.53208 * 3 2 1 38 38 H 1.08994 * 110.98988 * 81.02001 * 4 3 2 39 39 H 1.08999 * 110.99008 * 204.83915 * 4 3 2 40 40 H 1.08995 * 110.71156 * 277.27328 * 5 4 3 41 41 H 1.09006 * 110.70375 * 154.03399 * 5 4 3 42 42 H 1.07998 * 127.24459 * 359.97438 * 9 8 6 43 43 H 1.08998 * 110.31107 * 300.88288 * 14 13 11 44 44 H 1.08995 * 110.31713 * 62.96404 * 14 13 11 45 45 H 1.08997 * 112.37043 * 64.27490 * 17 15 14 46 46 H 1.09004 * 112.36836 * 191.63362 * 17 15 14 47 47 H 1.08999 * 110.31535 * 47.67983 * 20 18 13 48 48 H 1.08998 * 110.31525 * 169.86168 * 20 18 13 49 49 H 0.96998 * 120.00460 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3047 1.3027 0.8296 5 6 2.9158 0.2822 1.9315 6 6 1.9973 -0.7057 1.1819 7 1 2.5673 -1.5801 0.8676 8 6 0.8611 -1.1292 2.0766 9 6 0.5228 -2.3998 2.3982 10 6 -0.5973 -2.2875 3.2555 11 6 -1.3371 -3.4001 3.8855 12 8 -0.9980 -4.5492 3.6794 13 7 -2.3878 -3.1412 4.6889 14 6 -2.9297 -1.8117 5.0428 15 6 -4.1004 -2.1003 6.0329 16 1 -4.3988 -1.2756 6.6802 17 6 -3.5323 -3.3802 6.7447 18 6 -3.2440 -4.1392 5.3959 19 1 -2.8371 -5.1469 5.4808 20 6 -4.6384 -3.9965 4.7109 21 7 -5.1638 -2.6998 5.1734 22 6 -6.3821 -2.1532 4.8701 23 1 -6.6549 -1.1871 5.2683 24 6 -7.2667 -2.8409 4.0507 25 7 -6.9347 -4.0187 3.5657 26 14 -8.9290 -2.0957 3.6374 27 1 -9.0588 -0.7750 4.3038 28 1 -9.0417 -1.9220 2.1669 29 1 -10.0082 -2.9980 4.1134 30 7 -0.8519 -1.0012 3.3891 31 7 -0.0099 -0.3117 2.7064 32 1 -0.0008 0.6566 2.6518 33 1 -0.3634 0.6044 0.8311 34 1 -0.3634 0.4175 -0.9390 35 1 -0.3634 -1.0220 0.1079 36 1 2.2147 1.7038 -1.0182 37 1 1.2889 2.0592 0.4724 38 1 4.1301 0.9282 0.2243 39 1 3.5494 2.2720 1.2639 40 1 2.3743 0.7746 2.7392 41 1 3.8000 -0.2279 2.3138 42 1 1.0061 -3.3080 2.0696 43 1 -2.1632 -1.2079 5.5287 44 1 -3.3013 -1.3052 4.1522 45 1 -2.6235 -3.1719 7.3093 46 1 -4.2834 -3.8846 7.3526 47 1 -4.5292 -3.9978 3.6264 48 1 -5.2994 -4.8037 5.0264 49 1 -7.5526 -4.4991 2.9929 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032415608.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:41 Heat of formation + Delta-G solvation = 124.857324 kcal Electronic energy + Delta-G solvation = -31237.949551 eV Core-core repulsion = 27204.121220 eV Total energy + Delta-G solvation = -4033.828331 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.95609 -39.91037 -39.27069 -37.58375 -33.61585 -32.65075 -32.12330 -31.91776 -31.13331 -28.98635 -28.49844 -28.01373 -26.04542 -25.18540 -24.42720 -22.81658 -22.16552 -21.68351 -20.94507 -20.12847 -19.69733 -18.28536 -17.68688 -17.10291 -16.60278 -16.29852 -15.83115 -15.54175 -15.47685 -14.79322 -14.51043 -14.34346 -14.05676 -13.84318 -13.68553 -13.49704 -13.25893 -13.05348 -12.92937 -12.19226 -11.98048 -11.87527 -11.84494 -11.73082 -11.58838 -11.55449 -11.29425 -11.25313 -10.98340 -10.84791 -10.83122 -10.62064 -10.53970 -10.16896 -10.02561 -9.66662 -9.59330 -9.34000 -9.24546 -8.67685 -8.66552 -7.91189 -6.87407 -5.72917 -3.07130 1.68252 2.06322 2.71535 3.38663 3.42583 3.43598 3.46843 3.60463 3.79371 4.05822 4.17502 4.24372 4.45141 4.52802 4.63912 4.89026 4.91479 5.01073 5.06088 5.12730 5.18308 5.27735 5.33456 5.39150 5.41100 5.44524 5.55207 5.59379 5.63129 5.68341 5.71089 5.71905 5.81897 5.87680 6.12803 6.26969 6.32511 6.40535 6.47779 6.49353 6.54340 6.62228 6.66440 6.78248 6.91164 7.47426 7.54500 7.76439 7.84486 8.13028 8.16463 8.64360 9.14970 9.75182 10.44726 11.39001 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.014524 B = 0.002883 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.444697 B = 9710.490598 C =10699.096995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.522 5.522 3 C 0.035 3.965 4 C -0.129 4.129 5 C -0.138 4.138 6 C 0.142 3.858 7 H 0.114 0.886 8 C -0.005 4.005 9 C -0.164 4.164 10 C 0.004 3.996 11 C 0.610 3.390 12 O -0.549 6.549 13 N -0.592 5.592 14 C 0.098 3.902 15 C 0.137 3.863 16 H 0.105 0.895 17 C -0.152 4.152 18 C 0.099 3.901 19 H 0.115 0.885 20 C 0.176 3.824 21 N -0.597 5.597 22 C -0.229 4.229 23 H 0.080 0.920 24 C -0.007 4.007 25 N -0.919 5.919 26 Si 0.912 3.088 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.291 1.291 30 N -0.243 5.243 31 N -0.384 5.384 32 H 0.438 0.562 33 H 0.024 0.976 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.046 0.954 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.162 0.838 43 H 0.056 0.944 44 H 0.073 0.927 45 H 0.065 0.935 46 H 0.084 0.916 47 H 0.046 0.954 48 H 0.057 0.943 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.619 11.159 -2.334 23.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.246 5.246 3 C -0.093 4.093 4 C -0.167 4.167 5 C -0.177 4.177 6 C 0.033 3.967 7 H 0.132 0.868 8 C -0.131 4.131 9 C -0.193 4.193 10 C -0.157 4.157 11 C 0.397 3.603 12 O -0.426 6.426 13 N -0.324 5.324 14 C -0.027 4.027 15 C 0.029 3.971 16 H 0.123 0.877 17 C -0.191 4.191 18 C -0.004 4.004 19 H 0.133 0.867 20 C 0.051 3.949 21 N -0.321 5.321 22 C -0.357 4.357 23 H 0.098 0.902 24 C -0.204 4.204 25 N -0.566 5.566 26 Si 0.742 3.258 27 H -0.205 1.205 28 H -0.219 1.219 29 H -0.218 1.218 30 N -0.078 5.078 31 N -0.100 5.100 32 H 0.283 0.717 33 H 0.042 0.958 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.064 0.936 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.104 0.896 42 H 0.180 0.820 43 H 0.074 0.926 44 H 0.091 0.909 45 H 0.083 0.917 46 H 0.102 0.898 47 H 0.065 0.935 48 H 0.075 0.925 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 20.023 10.908 -2.582 22.947 hybrid contribution -0.748 0.830 -0.146 1.127 sum 19.274 11.738 -2.729 22.732 Atomic orbital electron populations 1.22739 0.86874 1.02758 1.00819 1.63865 1.08624 1.14247 1.37865 1.23193 0.95629 0.89320 1.01143 1.22731 0.97861 0.99386 0.96766 1.22896 1.00074 0.96836 0.97867 1.21195 0.90678 0.98524 0.86343 0.86774 1.21542 0.97896 0.91109 1.02515 1.21515 0.98752 0.96831 1.02200 1.22021 0.99391 0.90688 1.03633 1.16458 0.79130 0.86325 0.78423 1.90754 1.68261 1.20592 1.63019 1.49044 1.28197 1.09922 1.45244 1.23241 0.95979 0.83303 1.00183 1.23230 0.87837 0.94810 0.91272 0.87709 1.24221 1.00244 0.98883 0.95801 1.24489 0.91538 0.92526 0.91802 0.86697 1.21816 0.87456 0.88637 0.96995 1.45112 1.13975 1.18240 1.54766 1.19086 0.90042 1.01461 1.25069 0.90178 1.24819 0.98708 0.96910 0.99956 1.69932 1.35718 1.13606 1.37325 0.86051 0.83826 0.78094 0.77789 1.20516 1.21851 1.21755 1.73801 1.14130 1.05084 1.14792 1.43592 1.21822 1.09628 1.34935 0.71672 0.95751 0.90961 0.90367 0.89619 0.93596 0.90067 0.90464 0.91558 0.89634 0.82050 0.92601 0.90858 0.91650 0.89759 0.93540 0.92474 0.93671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 8.30 60.06 0.50 0.66 16 2 N -0.52 -4.49 5.44 -232.95 -1.27 -5.76 16 3 C 0.03 0.22 6.73 -2.30 -0.02 0.21 16 4 C -0.13 -0.67 7.08 -24.59 -0.17 -0.84 16 5 C -0.14 -0.86 6.46 -24.91 -0.16 -1.02 16 6 C 0.14 1.18 3.90 -67.88 -0.26 0.91 16 7 H 0.11 0.92 8.12 -51.93 -0.42 0.50 16 8 C 0.00 -0.05 3.67 -82.21 -0.30 -0.35 16 9 C -0.16 -2.30 10.72 -39.36 -0.42 -2.73 16 10 C 0.00 0.07 7.00 -82.77 -0.58 -0.51 16 11 C 0.61 12.33 7.90 -12.39 -0.10 12.23 16 12 O -0.55 -12.32 17.27 5.31 0.09 -12.23 16 13 N -0.59 -11.80 2.95 -157.71 -0.46 -12.27 16 14 C 0.10 1.84 4.97 -1.68 -0.01 1.83 16 15 C 0.14 2.66 5.53 -62.55 -0.35 2.31 16 16 H 0.11 1.82 8.14 -51.93 -0.42 1.40 16 17 C -0.15 -2.67 6.84 -22.10 -0.15 -2.82 16 18 C 0.10 1.99 5.25 -62.35 -0.33 1.66 16 19 H 0.12 2.22 8.06 -51.93 -0.42 1.80 16 20 C 0.18 4.35 4.74 -1.96 -0.01 4.34 16 21 N -0.60 -14.70 3.01 -156.74 -0.47 -15.18 16 22 C -0.23 -6.18 10.37 -15.06 -0.16 -6.34 16 23 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 24 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 25 N -0.92 -27.16 10.53 55.49 0.58 -26.58 16 26 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 28 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 29 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 30 N -0.24 -3.65 10.00 33.42 0.33 -3.32 16 31 N -0.38 -4.29 5.13 33.50 0.17 -4.12 16 32 H 0.44 3.67 7.86 -190.45 -1.50 2.17 16 33 H 0.02 0.22 5.39 -51.93 -0.28 -0.06 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.94 7.14 -51.92 -0.37 0.57 16 36 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.05 0.28 7.68 -51.92 -0.40 -0.12 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.42 7.58 -51.93 -0.39 0.03 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.16 2.12 8.06 -52.49 -0.42 1.70 16 43 H 0.06 0.93 7.74 -51.93 -0.40 0.53 16 44 H 0.07 1.54 7.93 -51.93 -0.41 1.13 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 47 H 0.05 1.33 7.68 -51.93 -0.40 0.93 16 48 H 0.06 1.54 7.42 -51.93 -0.39 1.15 16 49 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 382.08 15.07 5.76 5.76 Total: -1.00 -33.11 382.08 -11.63 -44.74 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -8.73 Total: 2.72 kcal Atomic # 6 Polarization: 11.86 SS G_CDS: -2.61 Total: 9.25 kcal Atomic # 7 Polarization: -66.10 SS G_CDS: -1.11 Total: -67.22 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.09 Total: -12.23 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.11 -11.63 -44.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032415608.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.593 kcal (2) G-P(sol) polarization free energy of solvation -33.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds