Wall clock time and date at job start Wed Apr 1 2020 03:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 120.00466 * 2 1 4 4 O 1.21274 * 120.00019 * 185.34288 * 3 2 1 5 5 C 1.50701 * 119.99839 * 5.34003 * 3 2 1 6 6 H 1.09007 * 109.87918 * 13.98194 * 5 3 2 7 7 C 1.54323 * 109.88802 * 252.78711 * 5 3 2 8 8 C 1.55135 * 103.01560 * 218.31000 * 7 5 3 9 9 C 1.54906 * 101.65381 * 35.65269 * 8 7 5 10 10 N 1.47437 * 109.88719 * 135.01548 * 5 3 2 11 11 C 1.38407 * 111.00249 * 356.14587 * 10 5 3 12 12 N 1.32490 * 119.21923 * 285.78016 * 11 10 5 13 13 C 1.32273 * 120.73955 * 179.71513 * 12 11 10 14 14 C 1.38602 * 119.19741 * 0.54465 * 13 12 11 15 15 C 1.38606 * 118.55890 * 359.73380 * 14 13 12 16 16 N 1.32272 * 119.19417 * 359.97438 * 15 14 13 17 17 C 1.46507 * 119.99434 * 180.02562 * 2 1 3 18 18 H 1.09005 * 110.77503 * 232.63511 * 17 2 1 19 19 C 1.55402 * 110.69538 * 109.24724 * 17 2 1 20 20 C 1.54915 * 101.66280 * 277.04284 * 19 17 2 21 21 N 1.47421 * 104.83163 * 323.07640 * 20 19 17 22 22 C 1.36939 * 125.64709 * 204.15863 * 21 20 19 23 23 H 1.08001 * 119.99909 * 179.97438 * 22 21 20 24 24 C 1.38817 * 119.99894 * 359.96381 * 22 21 20 25 25 N 1.31608 * 119.99729 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99826 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.46744 * 59.99886 * 26 24 22 28 28 H 1.48499 * 109.46704 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.47074 * 300.00028 * 26 24 22 30 30 C 1.47017 * 108.70449 * 24.13068 * 21 20 19 31 31 H 1.08993 * 109.47372 * 267.72345 * 1 2 3 32 32 H 1.09005 * 109.46984 * 27.72556 * 1 2 3 33 33 H 1.09000 * 109.47228 * 147.72035 * 1 2 3 34 34 H 1.09000 * 110.70262 * 336.69087 * 7 5 3 35 35 H 1.08995 * 110.70385 * 99.92472 * 7 5 3 36 36 H 1.09001 * 110.99140 * 277.56300 * 8 7 5 37 37 H 1.08998 * 111.02560 * 153.75758 * 8 7 5 38 38 H 1.09004 * 110.37088 * 204.09804 * 9 8 7 39 39 H 1.09004 * 110.37534 * 81.76036 * 9 8 7 40 40 H 1.08007 * 120.40021 * 180.25753 * 13 12 11 41 41 H 1.08005 * 120.72461 * 179.75253 * 14 13 12 42 42 H 1.07998 * 120.39889 * 179.97438 * 15 14 13 43 43 H 1.08999 * 110.88966 * 158.97500 * 19 17 2 44 44 H 1.08998 * 111.04122 * 35.17870 * 19 17 2 45 45 H 1.09001 * 110.36378 * 204.23482 * 20 19 17 46 46 H 1.09003 * 110.45689 * 81.96303 * 20 19 17 47 47 H 0.97007 * 119.99668 * 179.97438 * 25 24 22 48 48 H 1.09006 * 109.88878 * 118.35542 * 30 21 20 49 49 H 1.09007 * 109.88242 * 239.36509 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3478 1.1693 -0.0978 5 6 1.3904 2.4695 0.1215 6 1 0.3667 2.2799 0.4442 7 6 1.3891 3.2028 -1.2364 8 6 1.5585 4.6904 -0.8302 9 6 2.5036 4.5755 0.3917 10 7 2.0678 3.3486 1.0921 11 6 3.1427 2.7041 1.6792 12 7 2.9172 1.7687 2.5900 13 6 3.9219 1.1298 3.1662 14 6 5.2220 1.4575 2.8147 15 6 5.4222 2.4447 1.8626 16 7 4.3730 3.0407 1.3207 17 6 2.1974 -1.2689 -0.0006 18 1 2.9264 -1.2949 0.8094 19 6 2.8870 -1.5043 -1.3732 20 6 1.7266 -2.1006 -2.2084 21 7 0.9773 -2.9477 -1.2627 22 6 0.1839 -4.0115 -1.6001 23 1 -0.3250 -4.5715 -0.8294 24 6 0.0334 -4.3701 -2.9327 25 7 0.6530 -3.6872 -3.8718 26 14 -1.0484 -5.8218 -3.3929 27 1 -2.4368 -5.5708 -2.9299 28 1 -1.0416 -5.9962 -4.8676 29 1 -0.5261 -7.0528 -2.7469 30 6 1.2236 -2.4615 0.1027 31 1 -0.3634 -0.0408 1.0268 32 1 -0.3633 0.9097 -0.4781 33 1 -0.3634 -0.8688 -0.5488 34 1 2.2257 2.8739 -1.8528 35 1 0.4430 3.0504 -1.7557 36 1 0.6022 5.1285 -0.5443 37 1 2.0244 5.2640 -1.6315 38 1 2.3912 5.4436 1.0413 39 1 3.5384 4.4777 0.0633 40 1 3.7316 0.3653 3.9050 41 1 6.0609 0.9544 3.2725 42 1 6.4226 2.7239 1.5668 43 1 3.7068 -2.2164 -1.2792 44 1 3.2349 -0.5649 -1.8026 45 1 2.1193 -2.7026 -3.0279 46 1 1.0877 -1.3063 -2.5945 47 1 0.5482 -3.9380 -4.8030 48 1 0.2866 -2.1368 0.5554 49 1 1.6702 -3.2539 0.7035 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033165056.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:50 Heat of formation + Delta-G solvation = 101.116300 kcal Electronic energy + Delta-G solvation = -32531.458126 eV Core-core repulsion = 28496.600307 eV Total energy + Delta-G solvation = -4034.857819 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.69137 -39.87204 -38.45677 -36.90800 -34.59478 -33.57172 -33.02542 -32.19904 -29.94980 -29.73198 -29.17293 -27.36363 -26.61552 -24.55924 -24.35751 -23.89963 -22.48604 -21.32384 -20.43432 -19.98085 -18.83100 -17.58396 -17.40225 -17.17338 -16.94935 -16.16985 -15.97153 -15.36159 -15.06989 -14.78530 -14.71559 -14.33690 -13.90895 -13.67867 -13.63439 -13.33930 -13.00168 -12.82558 -12.72647 -12.55661 -12.23670 -12.10919 -11.75753 -11.68109 -11.51833 -11.31917 -11.10437 -11.01714 -10.92458 -10.75004 -10.68441 -10.63829 -10.23699 -10.16346 -10.02506 -9.93760 -9.68961 -9.53825 -9.06948 -8.69334 -8.39689 -8.21201 -6.89728 -5.69306 -3.12403 1.02523 1.27289 2.61816 3.18444 3.29850 3.37304 3.41824 3.43124 3.88955 4.24409 4.40159 4.44681 4.48330 4.59885 4.67948 4.84756 5.00380 5.14355 5.16410 5.23009 5.32343 5.34558 5.38535 5.42792 5.48184 5.62979 5.67421 5.68193 5.71949 5.78551 5.80058 5.82195 5.88607 6.05422 6.12143 6.26858 6.30231 6.34288 6.41869 6.50486 6.64910 6.70611 6.81598 6.99853 7.28291 7.48825 7.57620 7.64388 7.82362 8.25567 8.30849 8.32678 9.16788 9.77378 10.41939 11.33869 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.017358 B = 0.003320 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.737451 B = 8430.452480 C = 9210.119966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.580 5.580 3 C 0.508 3.492 4 O -0.539 6.539 5 C 0.067 3.933 6 H 0.115 0.885 7 C -0.129 4.129 8 C -0.124 4.124 9 C 0.039 3.961 10 N -0.447 5.447 11 C 0.507 3.493 12 N -0.521 5.521 13 C 0.169 3.831 14 C -0.254 4.254 15 C 0.175 3.825 16 N -0.527 5.527 17 C 0.139 3.861 18 H 0.072 0.928 19 C -0.149 4.149 20 C 0.157 3.843 21 N -0.601 5.601 22 C -0.227 4.227 23 H 0.077 0.923 24 C -0.008 4.008 25 N -0.920 5.920 26 Si 0.915 3.085 27 H -0.285 1.285 28 H -0.290 1.290 29 H -0.285 1.285 30 C 0.127 3.873 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.163 0.837 41 H 0.140 0.860 42 H 0.160 0.840 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.105 0.895 46 H 0.010 0.990 47 H 0.253 0.747 48 H 0.035 0.965 49 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.888 15.929 10.732 19.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.311 5.311 3 C 0.295 3.705 4 O -0.416 6.416 5 C -0.043 4.043 6 H 0.133 0.867 7 C -0.168 4.168 8 C -0.162 4.162 9 C -0.088 4.088 10 N -0.170 5.170 11 C 0.152 3.848 12 N -0.239 5.239 13 C 0.002 3.998 14 C -0.277 4.277 15 C 0.007 3.993 16 N -0.245 5.245 17 C 0.036 3.964 18 H 0.090 0.910 19 C -0.189 4.189 20 C 0.032 3.968 21 N -0.328 5.328 22 C -0.355 4.355 23 H 0.095 0.905 24 C -0.204 4.204 25 N -0.568 5.568 26 Si 0.745 3.255 27 H -0.212 1.212 28 H -0.216 1.216 29 H -0.212 1.212 30 C 0.001 3.999 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.116 0.884 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.111 0.889 40 H 0.180 0.820 41 H 0.158 0.842 42 H 0.177 0.823 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.122 0.878 46 H 0.028 0.972 47 H 0.063 0.937 48 H 0.053 0.947 49 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 4.266 16.380 10.443 19.889 hybrid contribution 0.587 -1.523 -0.303 1.660 sum 4.853 14.856 10.141 18.630 Atomic orbital electron populations 1.21984 0.79464 1.04048 1.01931 1.47750 1.07123 1.05412 1.70855 1.20619 0.88030 0.85451 0.76448 1.90711 1.13904 1.86607 1.50412 1.22690 0.99531 0.89939 0.92174 0.86738 1.22773 1.03973 0.95049 0.94968 1.22701 1.00219 0.95824 0.97469 1.23221 1.00892 0.90103 0.94552 1.60646 1.21455 1.05269 1.29667 1.20687 0.87503 0.87529 0.89046 1.67933 1.36732 1.09095 1.10100 1.22939 0.87989 0.94406 0.94503 1.22644 0.99503 1.02164 1.03379 1.22845 0.97512 0.89707 0.89207 1.68122 0.99629 1.31533 1.25256 1.22022 0.93749 0.82179 0.98475 0.91005 1.23357 0.99496 1.00364 0.95645 1.21889 0.89012 0.92758 0.93113 1.44523 1.55129 1.33654 0.99484 1.19013 1.20221 1.04352 0.91904 0.90497 1.24786 1.00546 0.99456 0.95573 1.69809 1.46187 1.41136 0.99682 0.86158 0.80030 0.82063 0.77248 1.21173 1.21585 1.21154 1.21609 0.95858 0.92564 0.89877 0.92540 0.91740 0.88367 0.90116 0.89345 0.90253 0.89836 0.89746 0.88936 0.82002 0.84163 0.82280 0.91692 0.91786 0.87775 0.97215 0.93657 0.94702 0.94944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.03 8.50 59.85 0.51 1.54 16 2 N -0.58 -9.90 2.99 -171.68 -0.51 -10.41 16 3 C 0.51 8.55 4.66 -10.98 -0.05 8.50 16 4 O -0.54 -10.33 12.64 5.56 0.07 -10.26 16 5 C 0.07 0.93 3.12 -67.88 -0.21 0.71 16 6 H 0.11 1.45 6.04 -51.92 -0.31 1.14 16 7 C -0.13 -1.51 6.46 -24.91 -0.16 -1.67 16 8 C -0.12 -1.16 7.08 -24.60 -0.17 -1.34 16 9 C 0.04 0.45 6.50 -2.30 -0.01 0.44 16 10 N -0.45 -6.33 5.25 -165.99 -0.87 -7.20 16 11 C 0.51 7.91 4.27 -322.81 -1.38 6.53 16 12 N -0.52 -8.12 9.48 -13.93 -0.13 -8.25 16 13 C 0.17 2.16 11.30 -17.23 -0.19 1.97 16 14 C -0.25 -2.86 10.16 -39.31 -0.40 -3.26 16 15 C 0.18 2.18 11.21 -17.23 -0.19 1.99 16 16 N -0.53 -7.87 7.23 -13.93 -0.10 -7.97 16 17 C 0.14 2.63 3.23 -65.96 -0.21 2.41 16 18 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 19 C -0.15 -3.12 6.51 -24.45 -0.16 -3.28 16 20 C 0.16 3.83 5.87 -2.53 -0.01 3.82 16 21 N -0.60 -14.90 3.13 -170.07 -0.53 -15.44 16 22 C -0.23 -6.13 10.27 -15.06 -0.15 -6.28 16 23 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 24 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 25 N -0.92 -26.45 10.09 55.49 0.56 -25.89 16 26 Si 0.91 21.65 29.55 -169.99 -5.02 16.62 16 27 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 28 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 29 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 30 C 0.13 2.60 6.02 -3.07 -0.02 2.58 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.81 6.35 -51.93 -0.33 0.48 16 33 H 0.10 1.76 6.17 -51.93 -0.32 1.44 16 34 H 0.08 1.11 7.84 -51.93 -0.41 0.70 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.09 1.21 6.36 -51.93 -0.33 0.88 16 40 H 0.16 1.58 8.06 -52.48 -0.42 1.15 16 41 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 42 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 43 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.06 1.37 7.02 -51.93 -0.36 1.00 16 45 H 0.10 2.90 5.87 -51.93 -0.31 2.59 16 46 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 47 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 48 H 0.04 0.68 5.84 -51.93 -0.30 0.38 16 49 H 0.03 0.66 8.14 -51.92 -0.42 0.24 16 LS Contribution 377.42 15.07 5.69 5.69 Total: -1.00 -33.27 377.42 -11.07 -44.34 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -7.29 Total: 4.41 kcal Atomic # 6 Polarization: 17.28 SS G_CDS: -2.92 Total: 14.36 kcal Atomic # 7 Polarization: -73.56 SS G_CDS: -1.59 Total: -75.15 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.07 Total: -10.26 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.27 -11.07 -44.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033165056.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.457 kcal (2) G-P(sol) polarization free energy of solvation -33.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds