Wall clock time and date at job start Wed Apr 1 2020 03:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 120.00466 * 2 1 4 4 O 1.21274 * 120.00019 * 185.34288 * 3 2 1 5 5 C 1.50701 * 119.99839 * 5.34003 * 3 2 1 6 6 H 1.09007 * 109.87918 * 13.98194 * 5 3 2 7 7 C 1.54323 * 109.88802 * 252.78711 * 5 3 2 8 8 C 1.55135 * 103.01560 * 218.31000 * 7 5 3 9 9 C 1.54906 * 101.65381 * 35.65269 * 8 7 5 10 10 N 1.47437 * 109.88719 * 135.01548 * 5 3 2 11 11 C 1.38407 * 111.00249 * 356.14587 * 10 5 3 12 12 N 1.32490 * 119.21923 * 285.78016 * 11 10 5 13 13 C 1.32273 * 120.73955 * 179.71513 * 12 11 10 14 14 C 1.38602 * 119.19741 * 0.54465 * 13 12 11 15 15 C 1.38606 * 118.55890 * 359.73380 * 14 13 12 16 16 N 1.32272 * 119.19417 * 359.97438 * 15 14 13 17 17 C 1.46507 * 119.99434 * 180.02562 * 2 1 3 18 18 H 1.09005 * 110.77503 * 232.63511 * 17 2 1 19 19 C 1.55402 * 110.69538 * 109.24724 * 17 2 1 20 20 C 1.54915 * 101.66280 * 277.04284 * 19 17 2 21 21 N 1.47421 * 104.83163 * 323.07640 * 20 19 17 22 22 C 1.36939 * 125.64709 * 204.15863 * 21 20 19 23 23 H 1.08001 * 119.99909 * 179.97438 * 22 21 20 24 24 C 1.38817 * 119.99894 * 359.96381 * 22 21 20 25 25 N 1.31608 * 119.99729 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99826 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.46744 * 59.99886 * 26 24 22 28 28 H 1.48499 * 109.46704 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.47074 * 300.00028 * 26 24 22 30 30 C 1.47017 * 108.70449 * 24.13068 * 21 20 19 31 31 H 1.08993 * 109.47372 * 267.72345 * 1 2 3 32 32 H 1.09005 * 109.46984 * 27.72556 * 1 2 3 33 33 H 1.09000 * 109.47228 * 147.72035 * 1 2 3 34 34 H 1.09000 * 110.70262 * 336.69087 * 7 5 3 35 35 H 1.08995 * 110.70385 * 99.92472 * 7 5 3 36 36 H 1.09001 * 110.99140 * 277.56300 * 8 7 5 37 37 H 1.08998 * 111.02560 * 153.75758 * 8 7 5 38 38 H 1.09004 * 110.37088 * 204.09804 * 9 8 7 39 39 H 1.09004 * 110.37534 * 81.76036 * 9 8 7 40 40 H 1.08007 * 120.40021 * 180.25753 * 13 12 11 41 41 H 1.08005 * 120.72461 * 179.75253 * 14 13 12 42 42 H 1.07998 * 120.39889 * 179.97438 * 15 14 13 43 43 H 1.08999 * 110.88966 * 158.97500 * 19 17 2 44 44 H 1.08998 * 111.04122 * 35.17870 * 19 17 2 45 45 H 1.09001 * 110.36378 * 204.23482 * 20 19 17 46 46 H 1.09003 * 110.45689 * 81.96303 * 20 19 17 47 47 H 0.97007 * 119.99668 * 179.97438 * 25 24 22 48 48 H 1.09006 * 109.88878 * 118.35542 * 30 21 20 49 49 H 1.09007 * 109.88242 * 239.36509 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3478 1.1693 -0.0978 5 6 1.3904 2.4695 0.1215 6 1 0.3667 2.2799 0.4442 7 6 1.3891 3.2028 -1.2364 8 6 1.5585 4.6904 -0.8302 9 6 2.5036 4.5755 0.3917 10 7 2.0678 3.3486 1.0921 11 6 3.1427 2.7041 1.6792 12 7 2.9172 1.7687 2.5900 13 6 3.9219 1.1298 3.1662 14 6 5.2220 1.4575 2.8147 15 6 5.4222 2.4447 1.8626 16 7 4.3730 3.0407 1.3207 17 6 2.1974 -1.2689 -0.0006 18 1 2.9264 -1.2949 0.8094 19 6 2.8870 -1.5043 -1.3732 20 6 1.7266 -2.1006 -2.2084 21 7 0.9773 -2.9477 -1.2627 22 6 0.1839 -4.0115 -1.6001 23 1 -0.3250 -4.5715 -0.8294 24 6 0.0334 -4.3701 -2.9327 25 7 0.6530 -3.6872 -3.8718 26 14 -1.0484 -5.8218 -3.3929 27 1 -2.4368 -5.5708 -2.9299 28 1 -1.0416 -5.9962 -4.8676 29 1 -0.5261 -7.0528 -2.7469 30 6 1.2236 -2.4615 0.1027 31 1 -0.3634 -0.0408 1.0268 32 1 -0.3633 0.9097 -0.4781 33 1 -0.3634 -0.8688 -0.5488 34 1 2.2257 2.8739 -1.8528 35 1 0.4430 3.0504 -1.7557 36 1 0.6022 5.1285 -0.5443 37 1 2.0244 5.2640 -1.6315 38 1 2.3912 5.4436 1.0413 39 1 3.5384 4.4777 0.0633 40 1 3.7316 0.3653 3.9050 41 1 6.0609 0.9544 3.2725 42 1 6.4226 2.7239 1.5668 43 1 3.7068 -2.2164 -1.2792 44 1 3.2349 -0.5649 -1.8026 45 1 2.1193 -2.7026 -3.0279 46 1 1.0877 -1.3063 -2.5945 47 1 0.5482 -3.9380 -4.8030 48 1 0.2866 -2.1368 0.5554 49 1 1.6702 -3.2539 0.7035 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033165056.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:49 Heat of formation + Delta-G solvation = 79.779338 kcal Electronic energy + Delta-G solvation = -32532.383366 eV Core-core repulsion = 28496.600307 eV Total energy + Delta-G solvation = -4035.783059 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.74809 -41.08402 -39.71818 -38.33754 -36.14457 -34.57955 -34.15551 -33.84790 -31.50594 -30.72074 -30.54136 -29.02171 -28.03713 -26.19080 -25.48081 -24.95545 -23.70035 -22.21264 -22.09489 -21.51132 -20.12320 -18.99069 -18.77998 -18.45135 -18.24220 -17.48826 -17.03362 -16.73563 -16.47500 -16.18455 -15.75958 -15.63836 -15.38218 -15.06904 -14.61209 -14.49608 -14.44300 -14.20073 -13.95878 -13.81267 -13.67849 -13.50034 -13.23901 -12.97191 -12.89722 -12.76078 -12.62874 -12.41216 -12.19073 -12.08562 -12.02478 -11.99635 -11.84629 -11.68918 -11.63642 -11.55683 -11.01273 -10.80549 -10.74147 -10.08593 -9.67159 -9.35164 -8.92056 -7.77581 -5.22837 0.05757 0.31426 1.40736 1.48460 1.51037 1.57439 1.88465 2.30182 2.49573 2.93110 3.20464 3.33778 3.44149 3.49314 3.62105 3.65817 3.78756 3.83577 3.90595 3.97743 4.10151 4.13988 4.22101 4.24232 4.34331 4.39290 4.51964 4.52178 4.58312 4.64868 4.78450 4.79897 4.85028 4.85358 4.90381 4.94212 4.96089 5.01236 5.03287 5.22401 5.38190 5.42964 5.49106 5.52900 5.56031 5.75341 5.82725 6.25764 6.31749 6.33447 7.02338 7.08135 7.26218 7.74870 8.39231 9.24329 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.017358 B = 0.003320 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.737451 B = 8430.452480 C = 9210.119966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.586 5.586 3 C 0.507 3.493 4 O -0.565 6.565 5 C 0.068 3.932 6 H 0.128 0.872 7 C -0.128 4.128 8 C -0.110 4.110 9 C 0.037 3.963 10 N -0.453 5.453 11 C 0.487 3.513 12 N -0.547 5.547 13 C 0.150 3.850 14 C -0.244 4.244 15 C 0.157 3.843 16 N -0.546 5.546 17 C 0.155 3.845 18 H 0.077 0.923 19 C -0.134 4.134 20 C 0.171 3.829 21 N -0.616 5.616 22 C -0.237 4.237 23 H 0.086 0.914 24 C -0.063 4.063 25 N -0.950 5.950 26 Si 0.980 3.020 27 H -0.275 1.275 28 H -0.297 1.297 29 H -0.278 1.278 30 C 0.129 3.871 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.107 0.893 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.073 0.927 40 H 0.188 0.812 41 H 0.175 0.825 42 H 0.187 0.813 43 H 0.064 0.936 44 H 0.057 0.943 45 H 0.068 0.932 46 H -0.013 1.013 47 H 0.246 0.754 48 H 0.051 0.949 49 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.318 16.592 12.248 21.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.317 5.317 3 C 0.295 3.705 4 O -0.444 6.444 5 C -0.042 4.042 6 H 0.146 0.854 7 C -0.167 4.167 8 C -0.148 4.148 9 C -0.090 4.090 10 N -0.176 5.176 11 C 0.132 3.868 12 N -0.265 5.265 13 C -0.016 4.016 14 C -0.266 4.266 15 C -0.011 4.011 16 N -0.264 5.264 17 C 0.051 3.949 18 H 0.095 0.905 19 C -0.174 4.174 20 C 0.046 3.954 21 N -0.343 5.343 22 C -0.366 4.366 23 H 0.104 0.896 24 C -0.256 4.256 25 N -0.599 5.599 26 Si 0.808 3.192 27 H -0.201 1.201 28 H -0.223 1.223 29 H -0.204 1.204 30 C 0.004 3.996 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.126 0.874 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.092 0.908 40 H 0.205 0.795 41 H 0.193 0.807 42 H 0.204 0.796 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.086 0.914 46 H 0.005 0.995 47 H 0.056 0.944 48 H 0.069 0.931 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.695 17.056 12.005 21.182 hybrid contribution 0.856 -1.718 -0.704 2.045 sum 4.552 15.338 11.301 19.588 Atomic orbital electron populations 1.22027 0.78180 1.03933 1.02970 1.47817 1.07896 1.04861 1.71164 1.21162 0.87908 0.86120 0.75340 1.90685 1.15238 1.87097 1.51374 1.22790 0.99486 0.88501 0.93421 0.85426 1.22798 1.03851 0.96392 0.93646 1.22711 1.00871 0.94372 0.96833 1.23294 1.00408 0.89701 0.95576 1.60768 1.21501 1.05666 1.29706 1.20897 0.88062 0.88219 0.89646 1.67931 1.38037 1.09749 1.10754 1.23515 0.88362 0.94789 0.94930 1.23023 1.00094 1.01209 1.02305 1.23473 0.98230 0.89933 0.89415 1.68148 1.00059 1.32287 1.25911 1.21731 0.93359 0.82889 0.96963 0.90466 1.23131 0.98207 0.99599 0.96456 1.21510 0.89542 0.91527 0.92802 1.44691 1.54933 1.33402 1.01240 1.19413 1.20133 1.04777 0.92283 0.89641 1.25605 1.02190 1.02125 0.95638 1.70061 1.47667 1.42666 0.99512 0.85127 0.78677 0.79067 0.76280 1.20130 1.22334 1.20435 1.21704 0.96922 0.93167 0.87819 0.90536 0.89287 0.91324 0.92747 0.87450 0.88052 0.88254 0.88459 0.90833 0.79538 0.80706 0.79604 0.91750 0.92429 0.91365 0.99484 0.94434 0.93101 0.94358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.03 8.50 127.77 1.09 3.12 16 2 N -0.59 -19.52 2.99 -815.47 -2.44 -21.97 16 3 C 0.51 16.73 4.66 87.66 0.41 17.13 16 4 O -0.57 -21.61 12.64 -3.01 -0.04 -21.65 16 5 C 0.07 1.79 3.12 44.52 0.14 1.93 16 6 H 0.13 2.96 6.04 -2.38 -0.01 2.94 16 7 C -0.13 -2.82 6.46 31.77 0.21 -2.62 16 8 C -0.11 -1.82 7.08 31.98 0.23 -1.59 16 9 C 0.04 0.81 6.50 86.77 0.56 1.37 16 10 N -0.45 -12.31 5.25 -679.07 -3.56 -15.88 16 11 C 0.49 14.85 4.27 261.49 1.12 15.97 16 12 N -0.55 -16.49 9.48 -197.99 -1.88 -18.36 16 13 C 0.15 3.62 11.30 84.71 0.96 4.58 16 14 C -0.24 -5.02 10.16 22.44 0.23 -4.79 16 15 C 0.16 3.70 11.21 84.71 0.95 4.65 16 16 N -0.55 -16.02 7.23 -197.99 -1.43 -17.46 16 17 C 0.15 5.76 3.23 46.26 0.15 5.91 16 18 H 0.08 2.83 8.14 -2.38 -0.02 2.81 16 19 C -0.13 -5.70 6.51 32.07 0.21 -5.49 16 20 C 0.17 8.64 5.87 86.86 0.51 9.15 16 21 N -0.62 -30.78 3.13 -691.98 -2.17 -32.94 16 22 C -0.24 -12.85 10.27 84.03 0.86 -11.98 16 23 H 0.09 4.37 7.83 -2.91 -0.02 4.35 16 24 C -0.06 -3.49 5.49 84.86 0.47 -3.02 16 25 N -0.95 -56.10 10.09 21.65 0.22 -55.88 16 26 Si 0.98 44.67 29.55 68.60 2.03 46.70 16 27 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 28 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 29 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 30 C 0.13 5.17 6.02 86.73 0.52 5.70 16 31 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.09 2.08 6.35 -2.38 -0.02 2.06 16 33 H 0.07 2.41 6.17 -2.39 -0.01 2.40 16 34 H 0.05 1.49 7.84 -2.39 -0.02 1.47 16 35 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.10 1.34 8.14 -2.39 -0.02 1.33 16 38 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 39 H 0.07 1.91 6.36 -2.38 -0.02 1.89 16 40 H 0.19 3.25 8.06 -2.91 -0.02 3.23 16 41 H 0.18 2.22 8.06 -2.91 -0.02 2.20 16 42 H 0.19 3.09 8.06 -2.91 -0.02 3.07 16 43 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 44 H 0.06 2.51 7.02 -2.39 -0.02 2.49 16 45 H 0.07 3.97 5.87 -2.39 -0.01 3.95 16 46 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 47 H 0.25 14.24 8.31 -92.70 -0.77 13.46 16 48 H 0.05 1.92 5.84 -2.38 -0.01 1.90 16 49 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 Total: -1.00 -73.78 377.42 0.29 -73.50 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: 0.96 Total: 23.92 kcal Atomic # 6 Polarization: 31.41 SS G_CDS: 8.60 Total: 40.01 kcal Atomic # 7 Polarization: -151.22 SS G_CDS: -11.26 Total: -162.48 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.04 Total: -21.65 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -73.78 0.29 -73.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033165056.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.276 kcal (2) G-P(sol) polarization free energy of solvation -73.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds