Wall clock time and date at job start Wed Apr 1 2020 03:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34774 * 120.00071 * 2 1 4 4 O 1.21277 * 119.99690 * 5.91730 * 3 2 1 5 5 C 1.50697 * 120.00172 * 185.90718 * 3 2 1 6 6 C 1.53121 * 109.52648 * 277.69925 * 5 3 2 7 7 C 1.53033 * 109.27771 * 182.43783 * 6 5 3 8 8 N 1.46850 * 109.52668 * 59.17884 * 7 6 5 9 9 C 1.46901 * 111.00385 * 174.15960 * 8 7 6 10 10 C 1.52997 * 109.46901 * 48.08396 * 9 8 7 11 11 F 1.39897 * 109.47337 * 293.78087 * 10 9 8 12 12 F 1.39903 * 109.47104 * 53.77963 * 10 9 8 13 13 C 1.46853 * 111.19491 * 298.25698 * 8 7 6 14 14 C 1.53040 * 109.52196 * 61.73906 * 13 8 7 15 15 C 1.46498 * 119.99698 * 180.02562 * 2 1 3 16 16 H 1.09002 * 110.88485 * 189.98562 * 15 2 1 17 17 C 1.55157 * 111.00903 * 313.90845 * 15 2 1 18 18 C 1.54320 * 102.94769 * 153.57658 * 17 15 2 19 19 N 1.47022 * 107.26861 * 337.80903 * 18 17 15 20 20 C 1.36938 * 125.64825 * 178.97509 * 19 18 17 21 21 H 1.08001 * 120.00512 * 179.97438 * 20 19 18 22 22 C 1.38810 * 119.99948 * 359.97259 * 20 19 18 23 23 N 1.31619 * 120.00318 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 120.00201 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46912 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46880 * 120.00057 * 24 22 20 27 27 H 1.48491 * 109.47111 * 240.00342 * 24 22 20 28 28 C 1.47420 * 108.70513 * 358.93938 * 19 18 17 29 29 H 1.09002 * 109.47595 * 275.03899 * 1 2 3 30 30 H 1.09000 * 109.46930 * 35.03989 * 1 2 3 31 31 H 1.09002 * 109.47420 * 155.03763 * 1 2 3 32 32 H 1.09004 * 109.51812 * 37.88600 * 5 3 2 33 33 H 1.09004 * 109.49872 * 302.37600 * 6 5 3 34 34 H 1.08997 * 109.50447 * 62.49375 * 6 5 3 35 35 H 1.08997 * 109.46522 * 299.16038 * 7 6 5 36 36 H 1.09006 * 109.46528 * 179.18813 * 7 6 5 37 37 H 1.08997 * 109.46707 * 168.08386 * 9 8 7 38 38 H 1.09000 * 109.46914 * 288.08502 * 9 8 7 39 39 H 1.09006 * 109.46996 * 173.77677 * 10 9 8 40 40 H 1.08999 * 109.45905 * 301.72620 * 13 8 7 41 41 H 1.09002 * 109.45233 * 181.75119 * 13 8 7 42 42 H 1.08997 * 109.50114 * 180.87764 * 14 13 8 43 43 H 1.08997 * 109.53474 * 60.78262 * 14 13 8 44 44 H 1.09004 * 110.71941 * 35.21231 * 17 15 2 45 45 H 1.09003 * 110.71776 * 271.94769 * 17 15 2 46 46 H 1.08998 * 109.88445 * 218.39290 * 18 17 15 47 47 H 1.08997 * 109.88158 * 97.22414 * 18 17 15 48 48 H 0.96992 * 120.00784 * 179.97438 * 23 22 20 49 49 H 1.09002 * 110.36842 * 142.96755 * 28 19 18 50 50 H 1.09004 * 110.36907 * 265.17929 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5373 2.2146 0.1083 5 6 3.6398 1.1707 -0.1343 6 6 4.2766 0.9052 1.2327 7 6 5.7999 0.9702 1.1016 8 7 6.1939 2.2957 0.6073 9 6 7.6556 2.4420 0.6003 10 6 8.2878 1.2143 -0.0583 11 9 8.0567 0.0872 0.7375 12 9 7.7191 1.0179 -1.3214 13 6 5.6328 2.5538 -0.7251 14 6 4.1044 2.5360 -0.6485 15 6 2.1974 -1.2687 -0.0006 16 1 3.2603 -1.1039 0.1761 17 6 1.6056 -2.2532 1.0425 18 6 1.9747 -3.6347 0.4624 19 7 2.2021 -3.4562 -0.9791 20 6 2.5701 -4.4407 -1.8569 21 1 2.7126 -4.2070 -2.9017 22 6 2.7598 -5.7390 -1.4040 23 7 2.5857 -6.0240 -0.1309 24 14 3.2624 -7.0819 -2.6014 25 1 3.3926 -6.5066 -3.9642 26 1 4.5652 -7.6576 -2.1810 27 1 2.2296 -8.1488 -2.6106 28 6 1.9677 -2.0420 -1.3231 29 1 -0.3634 0.0903 1.0237 30 1 -0.3633 0.8414 -0.5900 31 1 -0.3634 -0.9317 -0.4337 32 1 3.9445 0.3942 -0.8361 33 1 3.9399 1.6597 1.9436 34 1 3.9835 -0.0839 1.5847 35 1 6.1372 0.2064 0.4010 36 1 6.2561 0.7959 2.0762 37 1 7.9285 3.3361 0.0398 38 1 8.0167 2.5312 1.6249 39 1 9.3614 1.3709 -0.1636 40 1 5.9708 1.7825 -1.4171 41 1 5.9675 3.5296 -1.0771 42 1 3.6884 2.7121 -1.6405 43 1 3.7644 3.3162 0.0324 44 1 0.5235 -2.1396 1.1094 45 1 2.0706 -2.1074 2.0175 46 1 1.1559 -4.3357 0.6245 47 1 2.8826 -4.0058 0.9378 48 1 2.7179 -6.9312 0.1856 49 1 2.6773 -1.7137 -2.0826 50 1 0.9454 -1.9013 -1.6741 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033362531.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:24 Heat of formation + Delta-G solvation = -94.549869 kcal Electronic energy + Delta-G solvation = -32863.688124 eV Core-core repulsion = 28369.656397 eV Total energy + Delta-G solvation = -4494.031727 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.39431 -47.27663 -40.39202 -38.54601 -37.46194 -34.60383 -34.12915 -31.97799 -30.98900 -29.63742 -29.21434 -27.70709 -26.79444 -24.72522 -24.29266 -23.35409 -22.44269 -20.91123 -20.21310 -20.13184 -18.57743 -17.93436 -17.65110 -17.20113 -17.04411 -16.68204 -15.79427 -15.39295 -15.12371 -15.00941 -14.70030 -14.52143 -14.31759 -14.00837 -13.81105 -13.54704 -13.41115 -13.35877 -12.87503 -12.65159 -12.59836 -12.51474 -12.39647 -12.34651 -11.95556 -11.88312 -11.85343 -11.66151 -11.29782 -11.05601 -10.98455 -10.92336 -10.82873 -10.68557 -10.52314 -10.31041 -10.09516 -9.94586 -9.76587 -9.40836 -8.66770 -8.46676 -8.34598 -6.89353 -5.76028 -3.10397 2.79100 3.20563 3.35905 3.37578 3.43591 3.45626 3.63972 3.98884 4.17560 4.38907 4.44136 4.54321 4.71992 4.75843 5.00896 5.08663 5.17798 5.20388 5.25078 5.28198 5.37593 5.46642 5.50435 5.52206 5.60000 5.62630 5.65135 5.70874 5.75245 5.77315 5.84372 5.93584 5.99515 6.10784 6.17888 6.23585 6.32060 6.40694 6.49917 6.66547 6.70973 6.78670 6.81929 7.50365 7.53793 7.64192 7.77732 8.19428 8.37124 9.16570 9.76417 10.40751 11.35543 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.009625 B = 0.003787 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2908.434426 B = 7391.520429 C = 9392.248796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.600 5.600 3 C 0.522 3.478 4 O -0.550 6.550 5 C -0.110 4.110 6 C -0.107 4.107 7 C 0.045 3.955 8 N -0.530 5.530 9 C 0.010 3.990 10 C 0.221 3.779 11 F -0.199 7.199 12 F -0.200 7.200 13 C 0.036 3.964 14 C -0.094 4.094 15 C 0.114 3.886 16 H 0.101 0.899 17 C -0.152 4.152 18 C 0.179 3.821 19 N -0.603 5.603 20 C -0.229 4.229 21 H 0.079 0.921 22 C -0.006 4.006 23 N -0.921 5.921 24 Si 0.911 3.089 25 H -0.280 1.280 26 H -0.290 1.290 27 H -0.290 1.290 28 C 0.128 3.872 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.083 0.917 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.061 0.939 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.081 0.919 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.046 0.954 47 H 0.050 0.950 48 H 0.252 0.748 49 H 0.040 0.960 50 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.159 17.680 2.969 20.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.332 5.332 3 C 0.310 3.690 4 O -0.428 6.428 5 C -0.131 4.131 6 C -0.145 4.145 7 C -0.082 4.082 8 N -0.253 5.253 9 C -0.120 4.120 10 C 0.166 3.834 11 F -0.180 7.180 12 F -0.182 7.182 13 C -0.091 4.091 14 C -0.132 4.132 15 C 0.009 3.991 16 H 0.119 0.881 17 C -0.191 4.191 18 C 0.054 3.946 19 N -0.330 5.330 20 C -0.357 4.357 21 H 0.097 0.903 22 C -0.202 4.202 23 N -0.568 5.568 24 Si 0.742 3.258 25 H -0.205 1.205 26 H -0.217 1.217 27 H -0.217 1.217 28 C 0.001 3.999 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.064 0.936 47 H 0.068 0.932 48 H 0.063 0.937 49 H 0.058 0.942 50 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 8.635 18.311 3.338 20.518 hybrid contribution 0.527 -1.691 -1.168 2.121 sum 9.162 16.620 2.170 19.102 Atomic orbital electron populations 1.21562 0.79672 1.02771 1.01518 1.47878 1.06879 1.06057 1.72378 1.20542 0.89750 0.83045 0.75688 1.90642 1.70482 1.31418 1.50242 1.21397 0.91843 1.00275 0.99600 1.21610 0.94457 1.02804 0.95588 1.22494 0.95686 0.88857 1.01147 1.62074 1.06885 1.30481 1.25846 1.23438 0.89357 0.95955 1.03276 1.22924 0.99492 0.85455 0.75561 1.92998 1.95888 1.55127 1.73986 1.92926 1.86958 1.95838 1.42435 1.22526 0.95322 1.01920 0.89330 1.21390 0.93807 0.96125 1.01924 1.22654 0.96247 0.81965 0.98206 0.88086 1.23250 1.00420 0.97784 0.97675 1.21157 1.00275 0.89723 0.83449 1.44389 1.81081 1.02580 1.04918 1.19091 1.39322 0.87288 0.90035 0.90343 1.24793 1.01758 0.97307 0.96355 1.69954 1.55278 1.18997 1.12618 0.86050 0.77843 0.81973 0.79931 1.20487 1.21698 1.21711 1.21809 0.98139 0.86144 0.93849 0.93019 0.91415 0.90537 0.88912 0.90549 0.90381 0.92586 0.89861 0.87794 0.87483 0.87425 0.92047 0.90508 0.91153 0.90042 0.91713 0.91777 0.93614 0.93224 0.93727 0.94153 0.95916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.25 8.86 59.85 0.53 1.78 16 2 N -0.60 -9.37 2.91 -171.48 -0.50 -9.87 16 3 C 0.52 8.23 6.81 -10.99 -0.07 8.16 16 4 O -0.55 -10.03 15.74 5.56 0.09 -9.94 16 5 C -0.11 -1.47 1.72 -91.65 -0.16 -1.63 16 6 C -0.11 -1.32 5.08 -26.65 -0.14 -1.45 16 7 C 0.05 0.51 3.97 -3.83 -0.02 0.50 16 8 N -0.53 -5.25 4.86 -234.66 -1.14 -6.39 16 9 C 0.01 0.07 6.00 -3.83 -0.02 0.04 16 10 C 0.22 1.74 5.14 37.16 0.19 1.93 16 11 F -0.20 -2.14 13.96 2.25 0.03 -2.11 16 12 F -0.20 -2.14 13.88 2.25 0.03 -2.11 16 13 C 0.04 0.37 5.02 -3.83 -0.02 0.35 16 14 C -0.09 -1.14 4.92 -26.65 -0.13 -1.27 16 15 C 0.11 1.92 2.82 -65.78 -0.19 1.73 16 16 H 0.10 1.67 4.60 -51.93 -0.24 1.43 16 17 C -0.15 -2.71 6.43 -24.90 -0.16 -2.87 16 18 C 0.18 4.16 5.37 -3.07 -0.02 4.14 16 19 N -0.60 -14.88 3.39 -170.08 -0.58 -15.46 16 20 C -0.23 -6.25 10.28 -15.06 -0.15 -6.41 16 21 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 22 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 23 N -0.92 -26.44 10.31 55.49 0.57 -25.87 16 24 Si 0.91 21.81 29.55 -169.99 -5.02 16.78 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 C 0.13 2.57 6.81 -2.53 -0.02 2.55 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.96 7.67 -51.93 -0.40 0.56 16 31 H 0.08 1.09 6.46 -51.93 -0.34 0.75 16 32 H 0.09 1.30 7.02 -51.93 -0.36 0.93 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.08 1.00 6.58 -51.93 -0.34 0.66 16 35 H 0.06 0.72 5.72 -51.93 -0.30 0.42 16 36 H 0.08 0.88 7.82 -51.93 -0.41 0.47 16 37 H 0.10 0.51 7.87 -51.93 -0.41 0.10 16 38 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.69 5.53 -51.93 -0.29 0.41 16 41 H 0.08 0.67 7.96 -51.93 -0.41 0.25 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.08 1.08 7.80 -51.93 -0.41 0.68 16 44 H 0.06 1.09 6.61 -51.93 -0.34 0.75 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.05 1.18 7.50 -51.93 -0.39 0.79 16 47 H 0.05 1.27 7.38 -51.93 -0.38 0.89 16 48 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 49 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.02 0.46 6.85 -51.93 -0.36 0.11 16 LS Contribution 377.14 15.07 5.68 5.68 Total: -1.00 -32.05 377.14 -9.17 -41.22 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -7.87 Total: 0.76 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -0.46 Total: 7.31 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: -1.64 Total: -57.59 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.09 Total: -9.94 kcal Atomic # 9 Polarization: -4.29 SS G_CDS: 0.06 Total: -4.22 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.05 -9.17 -41.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033362531.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.332 kcal (2) G-P(sol) polarization free energy of solvation -32.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds