Wall clock time and date at job start Wed Apr 1 2020 03:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34774 * 120.00071 * 2 1 4 4 O 1.21277 * 119.99690 * 5.91730 * 3 2 1 5 5 C 1.50697 * 120.00172 * 185.90718 * 3 2 1 6 6 C 1.53121 * 109.52648 * 277.69925 * 5 3 2 7 7 C 1.53033 * 109.27771 * 182.43783 * 6 5 3 8 8 N 1.46850 * 109.52668 * 59.17884 * 7 6 5 9 9 C 1.46901 * 111.00385 * 174.15960 * 8 7 6 10 10 C 1.52997 * 109.46901 * 48.08396 * 9 8 7 11 11 F 1.39897 * 109.47337 * 293.78087 * 10 9 8 12 12 F 1.39903 * 109.47104 * 53.77963 * 10 9 8 13 13 C 1.46853 * 111.19491 * 298.25698 * 8 7 6 14 14 C 1.53040 * 109.52196 * 61.73906 * 13 8 7 15 15 C 1.46498 * 119.99698 * 180.02562 * 2 1 3 16 16 H 1.09002 * 110.88485 * 189.98562 * 15 2 1 17 17 C 1.55157 * 111.00903 * 313.90845 * 15 2 1 18 18 C 1.54320 * 102.94769 * 153.57658 * 17 15 2 19 19 N 1.47022 * 107.26861 * 337.80903 * 18 17 15 20 20 C 1.36938 * 125.64825 * 178.97509 * 19 18 17 21 21 H 1.08001 * 120.00512 * 179.97438 * 20 19 18 22 22 C 1.38810 * 119.99948 * 359.97259 * 20 19 18 23 23 N 1.31619 * 120.00318 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 120.00201 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46912 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46880 * 120.00057 * 24 22 20 27 27 H 1.48491 * 109.47111 * 240.00342 * 24 22 20 28 28 C 1.47420 * 108.70513 * 358.93938 * 19 18 17 29 29 H 1.09002 * 109.47595 * 275.03899 * 1 2 3 30 30 H 1.09000 * 109.46930 * 35.03989 * 1 2 3 31 31 H 1.09002 * 109.47420 * 155.03763 * 1 2 3 32 32 H 1.09004 * 109.51812 * 37.88600 * 5 3 2 33 33 H 1.09004 * 109.49872 * 302.37600 * 6 5 3 34 34 H 1.08997 * 109.50447 * 62.49375 * 6 5 3 35 35 H 1.08997 * 109.46522 * 299.16038 * 7 6 5 36 36 H 1.09006 * 109.46528 * 179.18813 * 7 6 5 37 37 H 1.08997 * 109.46707 * 168.08386 * 9 8 7 38 38 H 1.09000 * 109.46914 * 288.08502 * 9 8 7 39 39 H 1.09006 * 109.46996 * 173.77677 * 10 9 8 40 40 H 1.08999 * 109.45905 * 301.72620 * 13 8 7 41 41 H 1.09002 * 109.45233 * 181.75119 * 13 8 7 42 42 H 1.08997 * 109.50114 * 180.87764 * 14 13 8 43 43 H 1.08997 * 109.53474 * 60.78262 * 14 13 8 44 44 H 1.09004 * 110.71941 * 35.21231 * 17 15 2 45 45 H 1.09003 * 110.71776 * 271.94769 * 17 15 2 46 46 H 1.08998 * 109.88445 * 218.39290 * 18 17 15 47 47 H 1.08997 * 109.88158 * 97.22414 * 18 17 15 48 48 H 0.96992 * 120.00784 * 179.97438 * 23 22 20 49 49 H 1.09002 * 110.36842 * 142.96755 * 28 19 18 50 50 H 1.09004 * 110.36907 * 265.17929 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5373 2.2146 0.1083 5 6 3.6398 1.1707 -0.1343 6 6 4.2766 0.9052 1.2327 7 6 5.7999 0.9702 1.1016 8 7 6.1939 2.2957 0.6073 9 6 7.6556 2.4420 0.6003 10 6 8.2878 1.2143 -0.0583 11 9 8.0567 0.0872 0.7375 12 9 7.7191 1.0179 -1.3214 13 6 5.6328 2.5538 -0.7251 14 6 4.1044 2.5360 -0.6485 15 6 2.1974 -1.2687 -0.0006 16 1 3.2603 -1.1039 0.1761 17 6 1.6056 -2.2532 1.0425 18 6 1.9747 -3.6347 0.4624 19 7 2.2021 -3.4562 -0.9791 20 6 2.5701 -4.4407 -1.8569 21 1 2.7126 -4.2070 -2.9017 22 6 2.7598 -5.7390 -1.4040 23 7 2.5857 -6.0240 -0.1309 24 14 3.2624 -7.0819 -2.6014 25 1 3.3926 -6.5066 -3.9642 26 1 4.5652 -7.6576 -2.1810 27 1 2.2296 -8.1488 -2.6106 28 6 1.9677 -2.0420 -1.3231 29 1 -0.3634 0.0903 1.0237 30 1 -0.3633 0.8414 -0.5900 31 1 -0.3634 -0.9317 -0.4337 32 1 3.9445 0.3942 -0.8361 33 1 3.9399 1.6597 1.9436 34 1 3.9835 -0.0839 1.5847 35 1 6.1372 0.2064 0.4010 36 1 6.2561 0.7959 2.0762 37 1 7.9285 3.3361 0.0398 38 1 8.0167 2.5312 1.6249 39 1 9.3614 1.3709 -0.1636 40 1 5.9708 1.7825 -1.4171 41 1 5.9675 3.5296 -1.0771 42 1 3.6884 2.7121 -1.6405 43 1 3.7644 3.3162 0.0324 44 1 0.5235 -2.1396 1.1094 45 1 2.0706 -2.1074 2.0175 46 1 1.1559 -4.3357 0.6245 47 1 2.8826 -4.0058 0.9378 48 1 2.7179 -6.9312 0.1856 49 1 2.6773 -1.7137 -2.0826 50 1 0.9454 -1.9013 -1.6741 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033362531.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:23 Heat of formation + Delta-G solvation = -114.983110 kcal Electronic energy + Delta-G solvation = -32864.574176 eV Core-core repulsion = 28369.656397 eV Total energy + Delta-G solvation = -4494.917779 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.07827 -47.98706 -41.61928 -39.61286 -38.93857 -36.19816 -35.01568 -33.87470 -31.89871 -31.03104 -30.43133 -29.17562 -28.08484 -26.48332 -25.37110 -24.26355 -23.19534 -22.33852 -21.97735 -21.19394 -19.85694 -18.90272 -18.61880 -18.45443 -18.31872 -17.53300 -17.00109 -16.72518 -16.43339 -16.16253 -15.99355 -15.75735 -15.57715 -15.27774 -14.71397 -14.65098 -14.34853 -14.26339 -14.21256 -14.14475 -14.05713 -13.67149 -13.61389 -13.36231 -13.30470 -12.99454 -12.89792 -12.78870 -12.61461 -12.55845 -12.38682 -12.25290 -12.03353 -12.00783 -11.98472 -11.78718 -11.69904 -11.52752 -11.43033 -10.72527 -10.69670 -9.71996 -9.22365 -8.90813 -7.85810 -5.21964 1.46839 1.47133 1.52024 1.57383 1.92291 2.49691 2.68681 3.08051 3.31003 3.34272 3.46123 3.61016 3.64610 3.72111 3.78729 3.84179 3.89554 3.93527 4.08783 4.14159 4.21140 4.40589 4.42767 4.47915 4.54003 4.57628 4.58690 4.64751 4.68381 4.73821 4.77501 4.81118 4.86351 4.90101 4.91859 4.96130 5.01085 5.09185 5.19007 5.32219 5.43670 5.49202 5.62724 5.75021 5.95966 6.00837 6.17340 6.34542 7.08445 7.09896 7.74745 8.37873 9.24296 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.009625 B = 0.003787 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2908.434426 B = 7391.520429 C = 9392.248796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.599 5.599 3 C 0.522 3.478 4 O -0.572 6.572 5 C -0.107 4.107 6 C -0.102 4.102 7 C 0.053 3.947 8 N -0.536 5.536 9 C 0.011 3.989 10 C 0.210 3.790 11 F -0.219 7.219 12 F -0.219 7.219 13 C 0.042 3.958 14 C -0.090 4.090 15 C 0.135 3.865 16 H 0.108 0.892 17 C -0.136 4.136 18 C 0.188 3.812 19 N -0.622 5.622 20 C -0.242 4.242 21 H 0.081 0.919 22 C -0.060 4.060 23 N -0.948 5.948 24 Si 0.975 3.025 25 H -0.267 1.267 26 H -0.292 1.292 27 H -0.292 1.292 28 C 0.126 3.874 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.039 0.961 36 H 0.091 0.909 37 H 0.129 0.871 38 H 0.125 0.875 39 H 0.148 0.852 40 H 0.052 0.948 41 H 0.097 0.903 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.085 0.915 46 H 0.011 0.989 47 H 0.018 0.982 48 H 0.248 0.752 49 H 0.041 0.959 50 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.311 19.359 2.843 22.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.330 5.330 3 C 0.312 3.688 4 O -0.452 6.452 5 C -0.128 4.128 6 C -0.140 4.140 7 C -0.075 4.075 8 N -0.260 5.260 9 C -0.118 4.118 10 C 0.155 3.845 11 F -0.200 7.200 12 F -0.201 7.201 13 C -0.085 4.085 14 C -0.128 4.128 15 C 0.031 3.969 16 H 0.125 0.875 17 C -0.175 4.175 18 C 0.063 3.937 19 N -0.349 5.349 20 C -0.371 4.371 21 H 0.099 0.901 22 C -0.253 4.253 23 N -0.597 5.597 24 Si 0.803 3.197 25 H -0.192 1.192 26 H -0.219 1.219 27 H -0.219 1.219 28 C 0.000 4.000 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.057 0.943 36 H 0.109 0.891 37 H 0.147 0.853 38 H 0.143 0.857 39 H 0.165 0.835 40 H 0.070 0.930 41 H 0.116 0.884 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.097 0.903 45 H 0.104 0.896 46 H 0.030 0.970 47 H 0.037 0.963 48 H 0.057 0.943 49 H 0.060 0.940 50 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 9.783 20.025 3.199 22.516 hybrid contribution 0.151 -2.156 -1.149 2.448 sum 9.933 17.869 2.050 20.547 Atomic orbital electron populations 1.21660 0.78817 1.02889 1.02378 1.47869 1.07453 1.05455 1.72237 1.20916 0.90602 0.82502 0.74799 1.90632 1.71172 1.32062 1.51337 1.21412 0.90226 1.00991 1.00162 1.21569 0.95432 1.02295 0.94712 1.22365 0.94616 0.89319 1.01161 1.62053 1.09162 1.29290 1.25446 1.23622 0.87087 0.96351 1.04769 1.23460 1.01711 0.84868 0.74483 1.92957 1.96134 1.56412 1.74516 1.92887 1.87483 1.95933 1.43754 1.22477 0.93827 1.02729 0.89506 1.21354 0.95350 0.94763 1.01364 1.22314 0.96714 0.82058 0.95862 0.87461 1.23083 1.01533 0.94445 0.98449 1.20890 0.97544 0.92132 0.83143 1.44636 1.80919 1.04095 1.05281 1.19442 1.38728 0.88241 0.90714 0.90112 1.25579 1.02384 0.99409 0.97933 1.70155 1.56394 1.18959 1.14177 0.85065 0.76989 0.79074 0.78533 1.19166 1.21851 1.21909 1.21929 0.98201 0.84332 0.95578 0.91806 0.91242 0.90454 0.89568 0.90796 0.90963 0.94329 0.89111 0.85292 0.85719 0.83503 0.92994 0.88435 0.91348 0.91086 0.90343 0.89609 0.97028 0.96338 0.94304 0.94037 0.95491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.29 8.86 127.77 1.13 3.42 16 2 N -0.60 -17.91 2.91 -814.84 -2.37 -20.28 16 3 C 0.52 15.93 6.81 87.66 0.60 16.53 16 4 O -0.57 -20.28 15.74 -3.02 -0.05 -20.33 16 5 C -0.11 -2.77 1.72 -11.46 -0.02 -2.79 16 6 C -0.10 -2.42 5.08 30.65 0.16 -2.27 16 7 C 0.05 1.13 3.97 86.32 0.34 1.47 16 8 N -0.54 -9.52 4.86 -896.34 -4.35 -13.88 16 9 C 0.01 0.11 6.00 86.30 0.52 0.63 16 10 C 0.21 2.84 5.14 71.98 0.37 3.21 16 11 F -0.22 -4.46 13.96 44.97 0.63 -3.83 16 12 F -0.22 -4.40 13.88 44.97 0.62 -3.78 16 13 C 0.04 0.79 5.02 86.33 0.43 1.22 16 14 C -0.09 -2.08 4.92 30.65 0.15 -1.93 16 15 C 0.14 4.44 2.82 46.38 0.13 4.57 16 16 H 0.11 3.45 4.60 -2.39 -0.01 3.44 16 17 C -0.14 -4.72 6.43 31.78 0.20 -4.52 16 18 C 0.19 8.94 5.37 86.73 0.47 9.40 16 19 N -0.62 -31.11 3.39 -692.00 -2.35 -33.45 16 20 C -0.24 -13.37 10.28 84.03 0.86 -12.51 16 21 H 0.08 4.30 7.83 -2.91 -0.02 4.27 16 22 C -0.06 -3.34 5.49 84.86 0.47 -2.88 16 23 N -0.95 -55.90 10.31 21.65 0.22 -55.67 16 24 Si 0.97 45.26 29.55 68.60 2.03 47.29 16 25 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 26 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 27 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 28 C 0.13 5.01 6.81 86.86 0.59 5.60 16 29 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.07 1.87 7.67 -2.39 -0.02 1.85 16 31 H 0.08 2.08 6.46 -2.39 -0.02 2.06 16 32 H 0.09 2.37 7.02 -2.38 -0.02 2.35 16 33 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 34 H 0.07 1.78 6.58 -2.39 -0.02 1.76 16 35 H 0.04 0.97 5.72 -2.39 -0.01 0.96 16 36 H 0.09 1.79 7.82 -2.38 -0.02 1.77 16 37 H 0.13 0.75 7.87 -2.39 -0.02 0.73 16 38 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.15 0.82 8.14 -2.38 -0.02 0.81 16 40 H 0.05 1.11 5.53 -2.39 -0.01 1.09 16 41 H 0.10 1.43 7.96 -2.39 -0.02 1.41 16 42 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.07 1.81 7.80 -2.39 -0.02 1.79 16 44 H 0.08 2.53 6.61 -2.39 -0.02 2.51 16 45 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 46 H 0.01 0.62 7.50 -2.39 -0.02 0.60 16 47 H 0.02 0.98 7.38 -2.39 -0.02 0.96 16 48 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 49 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 50 H 0.03 1.07 6.85 -2.38 -0.02 1.06 16 Total: -1.00 -70.25 377.14 1.73 -68.53 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 0.94 Total: 16.24 kcal Atomic # 6 Polarization: 12.77 SS G_CDS: 6.40 Total: 19.17 kcal Atomic # 7 Polarization: -114.44 SS G_CDS: -8.85 Total: -123.29 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.05 Total: -20.33 kcal Atomic # 9 Polarization: -8.86 SS G_CDS: 1.25 Total: -7.61 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -70.25 1.73 -68.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033362531.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.455 kcal (2) G-P(sol) polarization free energy of solvation -70.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds