Wall clock time and date at job start Wed Apr 1 2020 03:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34770 * 119.99874 * 2 1 4 4 O 1.21481 * 120.00133 * 185.35669 * 3 2 1 5 5 C 1.48444 * 120.00157 * 5.35411 * 3 2 1 6 6 C 1.39084 * 120.50552 * 186.81718 * 5 3 2 7 7 C 1.39857 * 118.18745 * 179.74036 * 6 5 3 8 8 N 1.38508 * 120.51339 * 180.25597 * 7 6 5 9 9 C 1.48534 * 111.00053 * 62.88137 * 8 7 6 10 10 C 1.54935 * 103.22502 * 159.72070 * 9 8 7 11 11 C 1.54589 * 102.92361 * 322.58181 * 10 9 8 12 12 C 1.47904 * 110.99788 * 180.27456 * 8 7 6 13 13 N 1.32847 * 118.97394 * 0.52824 * 7 6 5 14 14 C 1.31852 * 120.90738 * 359.72960 * 13 7 6 15 15 N 1.31557 * 122.00959 * 359.97438 * 14 13 7 16 16 C 1.46498 * 119.99979 * 179.97438 * 2 1 3 17 17 H 1.08995 * 110.63795 * 178.31855 * 16 2 1 18 18 C 1.55156 * 110.72214 * 54.97620 * 16 2 1 19 19 C 1.55133 * 101.48381 * 205.96891 * 18 16 2 20 20 N 1.47427 * 104.72210 * 37.29627 * 19 18 16 21 21 C 1.36937 * 125.64592 * 155.81541 * 20 19 18 22 22 H 1.07994 * 119.99980 * 189.79080 * 21 20 19 23 23 C 1.38814 * 120.00048 * 9.78582 * 21 20 19 24 24 N 1.31621 * 120.00099 * 8.63968 * 23 21 20 25 25 Si 1.86796 * 120.00018 * 188.64006 * 23 21 20 26 26 H 1.48502 * 109.47153 * 265.00557 * 25 23 21 27 27 H 1.48493 * 109.47391 * 25.00580 * 25 23 21 28 28 H 1.48499 * 109.47283 * 145.00683 * 25 23 21 29 29 C 1.47020 * 108.70399 * 335.55260 * 20 19 18 30 30 H 1.09001 * 109.47161 * 275.41889 * 1 2 3 31 31 H 1.08996 * 109.47091 * 35.42136 * 1 2 3 32 32 H 1.09001 * 109.46916 * 155.42053 * 1 2 3 33 33 H 1.07999 * 120.90842 * 359.97438 * 6 5 3 34 34 H 1.09002 * 110.66168 * 278.15414 * 9 8 7 35 35 H 1.08997 * 110.66688 * 41.28093 * 9 8 7 36 36 H 1.09001 * 110.71600 * 204.22753 * 10 9 8 37 37 H 1.08997 * 110.87862 * 81.01559 * 10 9 8 38 38 H 1.09001 * 110.31045 * 263.04642 * 11 10 9 39 39 H 1.08999 * 110.31256 * 140.87813 * 11 10 9 40 40 H 1.09004 * 109.92214 * 333.51356 * 12 8 7 41 41 H 1.09008 * 109.91570 * 94.80594 * 12 8 7 42 42 H 1.07998 * 118.98998 * 180.02562 * 14 13 7 43 43 H 1.08998 * 111.00117 * 324.20716 * 18 16 2 44 44 H 1.09001 * 111.00084 * 88.02196 * 18 16 2 45 45 H 1.08995 * 110.49655 * 278.45550 * 19 18 16 46 46 H 1.09000 * 110.34057 * 156.06021 * 19 18 16 47 47 H 0.96995 * 120.00138 * 180.02562 * 24 23 21 48 48 H 1.08995 * 109.88435 * 120.70729 * 29 20 19 49 49 H 1.09002 * 109.87805 * 241.87381 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3497 1.1695 -0.0982 5 6 1.4015 2.4499 0.1200 6 6 2.0675 3.6629 -0.0201 7 6 1.3244 4.8419 0.0966 8 7 1.9378 6.0762 -0.0397 9 6 2.5030 6.2421 -1.4032 10 6 2.6504 7.7783 -1.5413 11 6 1.3957 8.3128 -0.8136 12 6 0.9617 7.1746 0.1285 13 7 0.0221 4.7597 0.3456 14 6 -0.5698 3.5889 0.4769 15 7 0.0918 2.4570 0.3685 16 6 2.1975 -1.2687 0.0006 17 1 3.2726 -1.0916 -0.0294 18 6 1.7508 -2.1611 -1.1874 19 6 2.0693 -3.5793 -0.6453 20 7 1.7324 -3.5166 0.7886 21 6 1.4004 -4.5853 1.5779 22 1 1.0173 -4.4222 2.5743 23 6 1.5562 -5.8781 1.0971 24 7 2.1782 -6.0854 -0.0442 25 14 0.8832 -7.3238 2.0699 26 1 1.9588 -7.8904 2.9227 27 1 -0.2382 -6.8640 2.9279 28 1 0.3938 -8.3664 1.1325 29 6 1.8182 -2.1176 1.2323 30 1 -0.3633 0.0970 1.0231 31 1 -0.3633 0.8374 -0.5956 32 1 -0.3633 -0.9346 -0.4275 33 1 3.1289 3.6934 -0.2175 34 1 3.4747 5.7540 -1.4788 35 1 1.8161 5.8524 -2.1544 36 1 2.6429 8.0735 -2.5906 37 1 3.5590 8.1270 -1.0505 38 1 0.6057 8.5311 -1.5322 39 1 1.6430 9.2057 -0.2393 40 1 -0.0363 6.8292 -0.1415 41 1 0.9699 7.5238 1.1612 42 1 -1.6303 3.5582 0.6787 43 1 0.6851 -2.0447 -1.3843 44 1 2.3369 -1.9448 -2.0806 45 1 3.1264 -3.8097 -0.7769 46 1 1.4523 -4.3244 -1.1476 47 1 2.2867 -6.9887 -0.3804 48 1 0.8541 -1.7930 1.6236 49 1 2.5849 -2.0188 2.0009 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033424423.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:33 Heat of formation + Delta-G solvation = 84.271160 kcal Electronic energy + Delta-G solvation = -30184.699571 eV Core-core repulsion = 26149.111293 eV Total energy + Delta-G solvation = -4035.588279 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.75602 -39.95493 -38.96627 -37.36393 -35.04799 -34.15120 -32.99257 -32.01380 -30.37759 -29.53854 -29.20720 -27.68680 -26.71817 -25.41357 -24.47552 -24.19627 -22.38218 -21.42705 -20.67809 -20.26451 -19.18075 -18.11600 -17.97587 -16.93051 -16.64623 -16.24807 -15.81349 -15.73443 -15.64405 -15.13023 -14.75743 -14.65772 -14.32761 -14.07923 -13.83992 -13.63789 -13.12011 -13.00118 -12.93363 -12.73232 -12.42822 -12.17019 -11.90820 -11.90302 -11.74069 -11.61662 -11.14843 -11.12300 -11.00918 -10.89813 -10.81769 -10.80270 -10.53895 -10.26679 -10.17170 -10.07752 -9.85466 -9.67936 -9.30840 -8.97900 -8.59764 -8.35670 -6.81358 -5.74597 -3.08012 0.30138 0.61596 2.63533 2.82640 3.08292 3.40102 3.45725 3.47816 3.56815 3.74119 3.77343 4.04402 4.25892 4.36086 4.49680 4.51711 4.67943 4.76276 4.92022 4.96113 5.17002 5.23726 5.28749 5.32030 5.39571 5.40522 5.44168 5.44882 5.51406 5.57556 5.63756 5.69283 5.77248 5.81998 5.93796 5.95929 6.16745 6.22677 6.35123 6.51037 6.54354 6.56603 6.64334 6.69511 6.95511 7.46407 7.48776 7.58298 7.69815 7.77603 8.11822 8.25450 9.18713 9.80091 10.46993 11.38198 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.032656 B = 0.002019 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.206558 B =13863.489472 C =14304.918228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.574 5.574 3 C 0.563 3.437 4 O -0.530 6.530 5 C 0.153 3.847 6 C -0.176 4.176 7 C 0.347 3.653 8 N -0.459 5.459 9 C 0.042 3.958 10 C -0.123 4.123 11 C -0.133 4.133 12 C 0.034 3.966 13 N -0.547 5.547 14 C 0.314 3.686 15 N -0.504 5.504 16 C 0.124 3.876 17 H 0.105 0.895 18 C -0.154 4.154 19 C 0.175 3.825 20 N -0.601 5.601 21 C -0.228 4.228 22 H 0.076 0.924 23 C -0.008 4.008 24 N -0.919 5.919 25 Si 0.912 3.088 26 H -0.289 1.289 27 H -0.280 1.280 28 H -0.290 1.290 29 C 0.130 3.870 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.159 0.841 34 H 0.096 0.904 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.203 0.797 43 H 0.067 0.933 44 H 0.063 0.937 45 H 0.030 0.970 46 H 0.074 0.926 47 H 0.253 0.747 48 H 0.030 0.970 49 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.484 28.672 -4.779 29.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.304 5.304 3 C 0.348 3.652 4 O -0.407 6.407 5 C 0.008 3.992 6 C -0.202 4.202 7 C 0.105 3.895 8 N -0.177 5.177 9 C -0.083 4.083 10 C -0.162 4.162 11 C -0.171 4.171 12 C -0.092 4.092 13 N -0.268 5.268 14 C 0.024 3.976 15 N -0.223 5.223 16 C 0.021 3.979 17 H 0.123 0.877 18 C -0.193 4.193 19 C 0.049 3.951 20 N -0.328 5.328 21 C -0.356 4.356 22 H 0.094 0.906 23 C -0.204 4.204 24 N -0.566 5.566 25 Si 0.742 3.258 26 H -0.216 1.216 27 H -0.206 1.206 28 H -0.216 1.216 29 C 0.003 3.997 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.177 0.823 34 H 0.115 0.885 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.219 0.781 43 H 0.086 0.914 44 H 0.082 0.918 45 H 0.048 0.952 46 H 0.093 0.907 47 H 0.063 0.937 48 H 0.048 0.952 49 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -4.357 28.412 -4.274 29.060 hybrid contribution -0.084 -0.810 0.103 0.821 sum -4.441 27.602 -4.171 28.266 Atomic orbital electron populations 1.22096 0.78052 1.02688 1.02807 1.47775 1.08141 1.05207 1.69280 1.17798 0.86464 0.82746 0.78235 1.90785 1.12960 1.86480 1.50447 1.21544 0.90109 0.94243 0.93333 1.22365 1.03204 0.90975 1.03614 1.20188 0.87825 0.91141 0.90334 1.61715 1.29201 0.99777 1.27021 1.23395 1.00837 0.97991 0.86069 1.22522 0.99013 0.93350 1.01268 1.22463 0.97803 0.98384 0.98492 1.22958 0.95714 0.89328 1.01248 1.68237 1.09792 1.30822 1.17914 1.24924 1.00865 0.81771 0.89992 1.68935 1.07786 1.30974 1.14626 1.22363 0.97130 0.81005 0.97410 0.87667 1.23448 1.00828 0.98642 0.96406 1.21465 0.98947 0.90512 0.84143 1.44430 1.81346 1.00800 1.06196 1.19016 1.35522 0.83882 0.97175 0.90584 1.24837 1.00360 0.97295 0.97921 1.69943 1.45533 1.20063 1.21027 0.86101 0.78546 0.82313 0.78796 1.21626 1.20587 1.21622 1.21523 0.98163 0.86292 0.93700 0.92032 0.89675 0.91085 0.82308 0.88521 0.92313 0.90146 0.90065 0.90984 0.90481 0.89692 0.89692 0.78106 0.91424 0.91820 0.95245 0.90734 0.93660 0.95185 0.95648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.18 7.88 59.85 0.47 1.65 16 2 N -0.57 -9.33 2.88 -172.72 -0.50 -9.83 16 3 C 0.56 9.14 7.66 -12.06 -0.09 9.05 16 4 O -0.53 -9.94 15.82 5.38 0.09 -9.86 16 5 C 0.15 2.05 6.57 -82.71 -0.54 1.51 16 6 C -0.18 -2.11 9.14 -38.66 -0.35 -2.46 16 7 C 0.35 3.72 6.21 -154.85 -0.96 2.75 16 8 N -0.46 -4.12 5.30 -169.03 -0.90 -5.01 16 9 C 0.04 0.29 6.09 -1.90 -0.01 0.28 16 10 C -0.12 -0.61 7.06 -24.87 -0.18 -0.78 16 11 C -0.13 -0.67 6.93 -25.38 -0.18 -0.85 16 12 C 0.03 0.25 6.36 -2.75 -0.02 0.23 16 13 N -0.55 -5.64 8.28 -13.82 -0.11 -5.76 16 14 C 0.31 3.02 12.27 -92.31 -1.13 1.89 16 15 N -0.50 -5.94 6.39 -11.22 -0.07 -6.01 16 16 C 0.12 2.34 3.36 -66.09 -0.22 2.11 16 17 H 0.11 2.12 7.00 -51.93 -0.36 1.75 16 18 C -0.15 -2.92 6.60 -24.46 -0.16 -3.08 16 19 C 0.17 4.21 5.44 -2.41 -0.01 4.20 16 20 N -0.60 -15.46 3.39 -169.93 -0.58 -16.03 16 21 C -0.23 -6.37 10.24 -15.06 -0.15 -6.52 16 22 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 23 C -0.01 -0.21 5.41 -17.43 -0.09 -0.31 16 24 N -0.92 -26.92 10.64 55.49 0.59 -26.33 16 25 Si 0.91 22.08 29.56 -169.99 -5.03 17.05 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 C 0.13 2.82 6.88 -3.06 -0.02 2.79 16 30 H 0.06 0.83 7.94 -51.93 -0.41 0.42 16 31 H 0.09 1.04 5.81 -51.93 -0.30 0.74 16 32 H 0.07 1.01 6.13 -51.93 -0.32 0.69 16 33 H 0.16 1.85 7.74 -52.49 -0.41 1.45 16 34 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.41 7.99 -51.93 -0.42 0.00 16 36 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.08 0.69 6.53 -51.93 -0.34 0.35 16 41 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 42 H 0.20 1.21 8.06 -52.49 -0.42 0.78 16 43 H 0.07 1.21 6.14 -51.93 -0.32 0.89 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 46 H 0.07 1.97 6.88 -51.93 -0.36 1.61 16 47 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 48 H 0.03 0.63 7.06 -51.93 -0.37 0.27 16 49 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 384.36 15.07 5.79 5.79 Total: -1.00 -32.55 384.36 -11.74 -44.29 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -7.37 Total: -0.78 kcal Atomic # 6 Polarization: 16.13 SS G_CDS: -3.66 Total: 12.47 kcal Atomic # 7 Polarization: -67.40 SS G_CDS: -1.57 Total: -68.97 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.05 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.55 -11.74 -44.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033424423.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.563 kcal (2) G-P(sol) polarization free energy of solvation -32.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds