Wall clock time and date at job start Wed Apr 1 2020 03:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34770 * 119.99874 * 2 1 4 4 O 1.21481 * 120.00133 * 185.35669 * 3 2 1 5 5 C 1.48444 * 120.00157 * 5.35411 * 3 2 1 6 6 C 1.39084 * 120.50552 * 186.81718 * 5 3 2 7 7 C 1.39857 * 118.18745 * 179.74036 * 6 5 3 8 8 N 1.38508 * 120.51339 * 180.25597 * 7 6 5 9 9 C 1.48534 * 111.00053 * 62.88137 * 8 7 6 10 10 C 1.54935 * 103.22502 * 159.72070 * 9 8 7 11 11 C 1.54589 * 102.92361 * 322.58181 * 10 9 8 12 12 C 1.47904 * 110.99788 * 180.27456 * 8 7 6 13 13 N 1.32847 * 118.97394 * 0.52824 * 7 6 5 14 14 C 1.31852 * 120.90738 * 359.72960 * 13 7 6 15 15 N 1.31557 * 122.00959 * 359.97438 * 14 13 7 16 16 C 1.46498 * 119.99979 * 179.97438 * 2 1 3 17 17 H 1.08995 * 110.63795 * 178.31855 * 16 2 1 18 18 C 1.55156 * 110.72214 * 54.97620 * 16 2 1 19 19 C 1.55133 * 101.48381 * 205.96891 * 18 16 2 20 20 N 1.47427 * 104.72210 * 37.29627 * 19 18 16 21 21 C 1.36937 * 125.64592 * 155.81541 * 20 19 18 22 22 H 1.07994 * 119.99980 * 189.79080 * 21 20 19 23 23 C 1.38814 * 120.00048 * 9.78582 * 21 20 19 24 24 N 1.31621 * 120.00099 * 8.63968 * 23 21 20 25 25 Si 1.86796 * 120.00018 * 188.64006 * 23 21 20 26 26 H 1.48502 * 109.47153 * 265.00557 * 25 23 21 27 27 H 1.48493 * 109.47391 * 25.00580 * 25 23 21 28 28 H 1.48499 * 109.47283 * 145.00683 * 25 23 21 29 29 C 1.47020 * 108.70399 * 335.55260 * 20 19 18 30 30 H 1.09001 * 109.47161 * 275.41889 * 1 2 3 31 31 H 1.08996 * 109.47091 * 35.42136 * 1 2 3 32 32 H 1.09001 * 109.46916 * 155.42053 * 1 2 3 33 33 H 1.07999 * 120.90842 * 359.97438 * 6 5 3 34 34 H 1.09002 * 110.66168 * 278.15414 * 9 8 7 35 35 H 1.08997 * 110.66688 * 41.28093 * 9 8 7 36 36 H 1.09001 * 110.71600 * 204.22753 * 10 9 8 37 37 H 1.08997 * 110.87862 * 81.01559 * 10 9 8 38 38 H 1.09001 * 110.31045 * 263.04642 * 11 10 9 39 39 H 1.08999 * 110.31256 * 140.87813 * 11 10 9 40 40 H 1.09004 * 109.92214 * 333.51356 * 12 8 7 41 41 H 1.09008 * 109.91570 * 94.80594 * 12 8 7 42 42 H 1.07998 * 118.98998 * 180.02562 * 14 13 7 43 43 H 1.08998 * 111.00117 * 324.20716 * 18 16 2 44 44 H 1.09001 * 111.00084 * 88.02196 * 18 16 2 45 45 H 1.08995 * 110.49655 * 278.45550 * 19 18 16 46 46 H 1.09000 * 110.34057 * 156.06021 * 19 18 16 47 47 H 0.96995 * 120.00138 * 180.02562 * 24 23 21 48 48 H 1.08995 * 109.88435 * 120.70729 * 29 20 19 49 49 H 1.09002 * 109.87805 * 241.87381 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3497 1.1695 -0.0982 5 6 1.4015 2.4499 0.1200 6 6 2.0675 3.6629 -0.0201 7 6 1.3244 4.8419 0.0966 8 7 1.9378 6.0762 -0.0397 9 6 2.5030 6.2421 -1.4032 10 6 2.6504 7.7783 -1.5413 11 6 1.3957 8.3128 -0.8136 12 6 0.9617 7.1746 0.1285 13 7 0.0221 4.7597 0.3456 14 6 -0.5698 3.5889 0.4769 15 7 0.0918 2.4570 0.3685 16 6 2.1975 -1.2687 0.0006 17 1 3.2726 -1.0916 -0.0294 18 6 1.7508 -2.1611 -1.1874 19 6 2.0693 -3.5793 -0.6453 20 7 1.7324 -3.5166 0.7886 21 6 1.4004 -4.5853 1.5779 22 1 1.0173 -4.4222 2.5743 23 6 1.5562 -5.8781 1.0971 24 7 2.1782 -6.0854 -0.0442 25 14 0.8832 -7.3238 2.0699 26 1 1.9588 -7.8904 2.9227 27 1 -0.2382 -6.8640 2.9279 28 1 0.3938 -8.3664 1.1325 29 6 1.8182 -2.1176 1.2323 30 1 -0.3633 0.0970 1.0231 31 1 -0.3633 0.8374 -0.5956 32 1 -0.3633 -0.9346 -0.4275 33 1 3.1289 3.6934 -0.2175 34 1 3.4747 5.7540 -1.4788 35 1 1.8161 5.8524 -2.1544 36 1 2.6429 8.0735 -2.5906 37 1 3.5590 8.1270 -1.0505 38 1 0.6057 8.5311 -1.5322 39 1 1.6430 9.2057 -0.2393 40 1 -0.0363 6.8292 -0.1415 41 1 0.9699 7.5238 1.1612 42 1 -1.6303 3.5582 0.6787 43 1 0.6851 -2.0447 -1.3843 44 1 2.3369 -1.9448 -2.0806 45 1 3.1264 -3.8097 -0.7769 46 1 1.4523 -4.3244 -1.1476 47 1 2.2867 -6.9887 -0.3804 48 1 0.8541 -1.7930 1.6236 49 1 2.5849 -2.0188 2.0009 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033424423.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:32 Heat of formation + Delta-G solvation = 65.575636 kcal Electronic energy + Delta-G solvation = -30185.510270 eV Core-core repulsion = 26149.111293 eV Total energy + Delta-G solvation = -4036.398977 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.62212 -41.13552 -39.76660 -38.97879 -36.46220 -35.12181 -34.03797 -33.66985 -31.13228 -31.08158 -30.05088 -29.33824 -27.91098 -26.91503 -25.75019 -25.23217 -23.23736 -22.20383 -22.05460 -21.63925 -20.52695 -19.19181 -18.94276 -18.77246 -17.69183 -17.23498 -16.78849 -16.74751 -16.68295 -16.54473 -16.02449 -15.84277 -15.65017 -15.35048 -14.92342 -14.57566 -14.43968 -14.20965 -13.99584 -13.79046 -13.66176 -13.52445 -13.32703 -13.12801 -12.86158 -12.72095 -12.46240 -12.35284 -12.22236 -12.20515 -12.00585 -11.94136 -11.84441 -11.80645 -11.59217 -11.48986 -11.42552 -11.11355 -10.71446 -10.24476 -9.80248 -9.62944 -8.90219 -7.88766 -5.25236 -0.66585 -0.19636 1.46852 1.48438 1.50950 1.58314 1.64210 2.29408 2.49456 2.65042 2.76635 3.06543 3.30796 3.41192 3.60998 3.67197 3.73197 3.79176 3.80624 3.90395 4.07846 4.11912 4.19438 4.26935 4.31456 4.44679 4.46978 4.52011 4.61328 4.66409 4.77348 4.83967 4.84607 4.89556 4.93282 4.98809 5.01332 5.09264 5.12386 5.16945 5.25162 5.39951 5.42871 5.48217 5.54808 5.68268 5.78734 5.84257 6.17667 6.21357 6.76812 6.93704 7.05903 7.71926 8.38246 9.22854 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.032656 B = 0.002019 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.206558 B =13863.489472 C =14304.918228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.575 5.575 3 C 0.562 3.438 4 O -0.562 6.562 5 C 0.142 3.858 6 C -0.182 4.182 7 C 0.351 3.649 8 N -0.469 5.469 9 C 0.038 3.962 10 C -0.118 4.118 11 C -0.128 4.128 12 C 0.032 3.968 13 N -0.547 5.547 14 C 0.319 3.681 15 N -0.513 5.513 16 C 0.139 3.861 17 H 0.091 0.909 18 C -0.133 4.133 19 C 0.180 3.820 20 N -0.620 5.620 21 C -0.244 4.244 22 H 0.080 0.920 23 C -0.063 4.063 24 N -0.948 5.948 25 Si 0.981 3.019 26 H -0.289 1.289 27 H -0.267 1.267 28 H -0.291 1.291 29 C 0.132 3.868 30 H 0.065 0.935 31 H 0.104 0.896 32 H 0.067 0.933 33 H 0.155 0.845 34 H 0.097 0.903 35 H 0.057 0.943 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.240 0.760 43 H 0.085 0.915 44 H 0.082 0.918 45 H -0.001 1.001 46 H 0.047 0.953 47 H 0.250 0.750 48 H 0.042 0.958 49 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.261 31.050 -4.776 32.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.305 5.305 3 C 0.349 3.651 4 O -0.441 6.441 5 C -0.003 4.003 6 C -0.208 4.208 7 C 0.109 3.891 8 N -0.187 5.187 9 C -0.086 4.086 10 C -0.156 4.156 11 C -0.166 4.166 12 C -0.094 4.094 13 N -0.268 5.268 14 C 0.031 3.969 15 N -0.232 5.232 16 C 0.035 3.965 17 H 0.109 0.891 18 C -0.172 4.172 19 C 0.055 3.945 20 N -0.347 5.347 21 C -0.373 4.373 22 H 0.097 0.903 23 C -0.256 4.256 24 N -0.596 5.596 25 Si 0.809 3.191 26 H -0.216 1.216 27 H -0.192 1.192 28 H -0.217 1.217 29 C 0.005 3.995 30 H 0.083 0.917 31 H 0.123 0.877 32 H 0.085 0.915 33 H 0.173 0.827 34 H 0.115 0.885 35 H 0.076 0.924 36 H 0.116 0.884 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.256 0.744 43 H 0.103 0.897 44 H 0.101 0.899 45 H 0.017 0.983 46 H 0.065 0.935 47 H 0.059 0.941 48 H 0.060 0.940 49 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -6.158 30.838 -4.264 31.735 hybrid contribution 0.483 -1.419 0.147 1.506 sum -5.674 29.419 -4.118 30.243 Atomic orbital electron populations 1.22215 0.76225 1.03264 1.03425 1.47751 1.09060 1.04209 1.69431 1.18200 0.86250 0.83536 0.77141 1.90761 1.14491 1.87100 1.51710 1.21089 0.90959 0.92964 0.95239 1.22342 1.03173 0.91125 1.04141 1.20336 0.87911 0.91420 0.89475 1.61722 1.29406 0.99487 1.28077 1.23507 1.00656 0.99631 0.84840 1.22540 0.99058 0.91609 1.02388 1.22462 0.98073 0.97766 0.98301 1.23023 0.95081 0.89544 1.01752 1.68368 1.09447 1.31050 1.17935 1.25679 1.02111 0.80864 0.88257 1.68874 1.06899 1.32088 1.15321 1.21932 0.96708 0.82014 0.95879 0.89112 1.23249 1.02221 0.94958 0.96800 1.21242 0.96475 0.92966 0.83818 1.44698 1.81190 1.01950 1.06839 1.19381 1.35351 0.84931 0.97640 0.90268 1.25694 1.00914 0.99892 0.99102 1.70141 1.46677 1.20238 1.22540 0.85039 0.78024 0.78689 0.77392 1.21583 1.19173 1.21708 1.21577 0.98265 0.84951 0.94661 0.91655 0.87748 0.91484 0.82704 0.88479 0.92439 0.88449 0.89833 0.89987 0.89407 0.90295 0.90011 0.74414 0.89699 0.89948 0.98329 0.93492 0.94108 0.93964 0.96914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.30 7.88 127.77 1.01 3.31 16 2 N -0.58 -18.23 2.88 -818.68 -2.36 -20.59 16 3 C 0.56 18.07 7.66 86.97 0.67 18.74 16 4 O -0.56 -21.36 15.82 -3.65 -0.06 -21.42 16 5 C 0.14 3.67 6.57 41.84 0.27 3.94 16 6 C -0.18 -4.23 9.14 22.86 0.21 -4.02 16 7 C 0.35 7.04 6.21 133.27 0.83 7.86 16 8 N -0.47 -7.74 5.30 -688.69 -3.65 -11.39 16 9 C 0.04 0.47 6.09 86.65 0.53 1.00 16 10 C -0.12 -0.88 7.06 31.80 0.22 -0.66 16 11 C -0.13 -0.97 6.93 31.47 0.22 -0.75 16 12 C 0.03 0.41 6.36 86.45 0.55 0.96 16 13 N -0.55 -10.10 8.28 -197.65 -1.64 -11.74 16 14 C 0.32 5.28 12.27 180.94 2.22 7.50 16 15 N -0.51 -11.00 6.39 -189.40 -1.21 -12.21 16 16 C 0.14 5.25 3.36 46.18 0.15 5.40 16 17 H 0.09 3.73 7.00 -2.39 -0.02 3.71 16 18 C -0.13 -5.01 6.60 32.06 0.21 -4.80 16 19 C 0.18 8.97 5.44 86.93 0.47 9.44 16 20 N -0.62 -32.53 3.39 -691.54 -2.35 -34.88 16 21 C -0.24 -13.85 10.24 84.03 0.86 -12.99 16 22 H 0.08 4.32 7.84 -2.91 -0.02 4.30 16 23 C -0.06 -3.57 5.41 84.86 0.46 -3.11 16 24 N -0.95 -57.05 10.64 21.65 0.23 -56.82 16 25 Si 0.98 45.79 29.56 68.60 2.03 47.82 16 26 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 27 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 28 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 29 C 0.13 5.75 6.88 86.73 0.60 6.35 16 30 H 0.06 1.64 7.94 -2.39 -0.02 1.62 16 31 H 0.10 2.29 5.81 -2.39 -0.01 2.28 16 32 H 0.07 1.78 6.13 -2.39 -0.01 1.76 16 33 H 0.16 3.65 7.74 -2.91 -0.02 3.62 16 34 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.06 0.72 7.99 -2.39 -0.02 0.70 16 36 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.08 0.48 8.14 -2.39 -0.02 0.47 16 39 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.08 1.12 6.53 -2.39 -0.02 1.11 16 41 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 42 H 0.24 1.93 8.06 -2.91 -0.02 1.90 16 43 H 0.08 2.92 6.14 -2.39 -0.01 2.91 16 44 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 45 H 0.00 -0.07 8.08 -2.39 -0.02 -0.09 16 46 H 0.05 2.57 6.88 -2.39 -0.02 2.55 16 47 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 48 H 0.04 1.75 7.06 -2.39 -0.02 1.73 16 49 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -71.67 384.36 1.44 -70.24 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 0.96 Total: 12.83 kcal Atomic # 6 Polarization: 28.69 SS G_CDS: 9.48 Total: 38.17 kcal Atomic # 7 Polarization: -136.66 SS G_CDS: -10.97 Total: -147.63 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.06 Total: -21.42 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -71.67 1.44 -70.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033424423.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.811 kcal (2) G-P(sol) polarization free energy of solvation -71.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds