Wall clock time and date at job start Wed Apr 1 2020 03:18:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 C 1.34772 * 120.00329 * 2 1
4 4 O 1.21473 * 120.00341 * 185.66206 * 3 2 1
5 5 C 1.48447 * 119.99746 * 5.65529 * 3 2 1
6 6 C 1.39080 * 120.50640 * 186.12940 * 5 3 2
7 7 C 1.39854 * 118.18917 * 180.02562 * 6 5 3
8 8 N 1.38513 * 120.50903 * 179.97438 * 7 6 5
9 9 C 1.48527 * 111.00117 * 62.60248 * 8 7 6
10 10 C 1.54936 * 103.22673 * 159.71513 * 9 8 7
11 11 C 1.54593 * 102.92495 * 322.59112 * 10 9 8
12 12 C 1.47905 * 110.99457 * 180.02562 * 8 7 6
13 13 N 1.32838 * 118.97814 * 359.97438 * 7 6 5
14 14 C 1.31850 * 120.90379 * 0.02562 * 13 7 6
15 15 N 1.31553 * 122.01221 * 359.70752 * 14 13 7
16 16 C 1.46496 * 119.99740 * 179.97438 * 2 1 3
17 17 H 1.09000 * 110.88892 * 176.12028 * 16 2 1
18 18 C 1.55159 * 111.01067 * 300.00476 * 16 2 1
19 19 C 1.54322 * 102.94473 * 82.56897 * 18 16 2
20 20 N 1.47018 * 107.26958 * 22.19410 * 19 18 16
21 21 C 1.36935 * 125.65038 * 181.02054 * 20 19 18
22 22 H 1.07994 * 120.00460 * 176.98588 * 21 20 19
23 23 C 1.38819 * 119.99861 * 356.98513 * 21 20 19
24 24 N 1.31610 * 120.00064 * 216.51440 * 23 21 20
25 25 Si 1.86804 * 119.99532 * 36.79313 * 23 21 20
26 26 H 1.48505 * 109.46673 * 268.07646 * 25 23 21
27 27 H 1.48496 * 109.47247 * 28.07560 * 25 23 21
28 28 H 1.48504 * 109.46840 * 148.08031 * 25 23 21
29 29 C 1.47424 * 108.70664 * 1.29134 * 20 19 18
30 30 H 1.09003 * 109.47235 * 274.95043 * 1 2 3
31 31 H 1.09001 * 109.47242 * 34.94519 * 1 2 3
32 32 H 1.08998 * 109.47745 * 154.94646 * 1 2 3
33 33 H 1.08004 * 120.90657 * 359.97438 * 6 5 3
34 34 H 1.08998 * 110.67074 * 278.15446 * 9 8 7
35 35 H 1.08999 * 110.66795 * 41.28755 * 9 8 7
36 36 H 1.09000 * 110.73111 * 204.22416 * 10 9 8
37 37 H 1.09010 * 110.71920 * 80.94380 * 10 9 8
38 38 H 1.09006 * 110.30397 * 263.03908 * 11 10 9
39 39 H 1.09001 * 110.39565 * 140.91585 * 11 10 9
40 40 H 1.08994 * 109.91763 * 333.50893 * 12 8 7
41 41 H 1.09000 * 109.91755 * 94.60517 * 12 8 7
42 42 H 1.08000 * 118.99049 * 180.02562 * 14 13 7
43 43 H 1.09003 * 110.71506 * 324.21023 * 18 16 2
44 44 H 1.08995 * 110.87492 * 201.00892 * 18 16 2
45 45 H 1.09000 * 109.88037 * 262.77874 * 19 18 16
46 46 H 1.08994 * 110.00876 * 141.68840 * 19 18 16
47 47 H 0.96998 * 120.00521 * 5.29274 * 24 23 21
48 48 H 1.09000 * 110.37187 * 94.47397 * 29 20 19
49 49 H 1.09003 * 110.36774 * 216.80609 * 29 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1389 1.1671 0.0000
4 8 3.3492 1.1697 -0.1038
5 6 1.4021 2.4496 0.1267
6 6 2.0701 3.6630 0.0009
7 6 1.3285 4.8418 0.1295
8 7 1.9452 6.0766 0.0134
9 6 2.5242 6.2572 -1.3424
10 6 2.6751 7.7945 -1.4615
11 6 1.4141 8.3228 -0.7401
12 6 0.9691 7.1746 0.1852
13 7 0.0238 4.7589 0.3646
14 6 -0.5710 3.5875 0.4770
15 7 0.0892 2.4559 0.3576
16 6 2.1974 -1.2687 0.0006
17 1 3.2716 -1.0974 -0.0684
18 6 1.8483 -2.1121 1.2553
19 6 0.5310 -2.8062 0.8496
20 7 0.4792 -2.8197 -0.6196
21 6 -0.5405 -3.3303 -1.3776
22 1 -0.5066 -3.2486 -2.4539
23 6 -1.6180 -3.9531 -0.7625
24 7 -2.1821 -5.0003 -1.3257
25 14 -2.2720 -3.2998 0.8608
26 1 -1.5977 -3.9997 1.9837
27 1 -2.0025 -1.8424 0.9526
28 1 -3.7358 -3.5384 0.9366
29 6 1.7098 -2.1983 -1.1418
30 1 -0.3634 0.0887 1.0238
31 1 -0.3634 0.8424 -0.5886
32 1 -0.3634 -0.9309 -0.4352
33 1 3.1326 3.6941 -0.1900
34 1 3.4958 5.7684 -1.4140
35 1 1.8441 5.8773 -2.1048
36 1 2.6786 8.1020 -2.5073
37 1 3.5793 8.1336 -0.9558
38 1 0.6316 8.5505 -1.4640
39 1 1.6554 9.2092 -0.1534
40 1 -0.0266 6.8339 -0.0984
41 1 0.9655 7.5093 1.2225
42 1 -1.6335 3.5561 0.6679
43 1 1.6942 -1.4688 2.1216
44 1 2.6260 -2.8486 1.4570
45 1 -0.3185 -2.2495 1.2454
46 1 0.5148 -3.8272 1.2306
47 1 -1.7986 -5.3840 -2.1298
48 1 2.4576 -2.9612 -1.3585
49 1 1.4905 -1.6158 -2.0367
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001033424424.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:18:37
Heat of formation + Delta-G solvation = 95.340995 kcal
Electronic energy + Delta-G solvation = -30994.214780 eV
Core-core repulsion = 26959.106525 eV
Total energy + Delta-G solvation = -4035.108255 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.191 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-41.69130 -40.01229 -38.98754 -37.72895 -34.79553 -33.96673 -32.94500 -32.26421
-30.31610 -29.75697 -29.43096 -28.42278 -26.35434 -25.36588 -24.40377 -23.68637
-22.40196 -21.45785 -20.93918 -20.50243 -19.27867 -18.02145 -17.89219 -17.44298
-16.60829 -16.27385 -15.81325 -15.73216 -15.59893 -15.29302 -14.80251 -14.78028
-14.40262 -14.22321 -13.63962 -13.53408 -13.30387 -13.09720 -12.96980 -12.77575
-12.62508 -12.16465 -11.87206 -11.86073 -11.70232 -11.56986 -11.23808 -11.20494
-11.08938 -10.98941 -10.84765 -10.78606 -10.75177 -10.25247 -10.21117 -10.18006
-9.74948 -9.27273 -9.13056 -8.93262 -8.48910 -8.23611 -7.08211 -6.43642
-3.14659 0.36792 0.69316 2.68521 2.87577 3.15298 3.44890 3.51114
3.64475 3.66594 3.82236 3.85305 4.09074 4.30648 4.41573 4.56490
4.62064 4.74317 4.80716 4.90000 4.95879 5.02421 5.13651 5.20427
5.24800 5.29757 5.32902 5.37451 5.43441 5.48475 5.55070 5.57550
5.67837 5.79437 5.86863 5.94597 5.98949 6.06357 6.18180 6.28862
6.36886 6.48459 6.54119 6.55596 6.68337 6.78392 6.81872 6.95105
7.56567 7.68975 7.78491 8.16792 8.30585 8.98144 9.57364 10.24094
11.04069
Molecular weight = 345.19amu
Principal moments of inertia in cm(-1)
A = 0.019882 B = 0.002684 C = 0.002522
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1407.978577 B =10430.034432 C =11099.862667
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.063 3.937
2 N -0.563 5.563
3 C 0.561 3.439
4 O -0.540 6.540
5 C 0.152 3.848
6 C -0.177 4.177
7 C 0.345 3.655
8 N -0.459 5.459
9 C 0.042 3.958
10 C -0.123 4.123
11 C -0.133 4.133
12 C 0.034 3.966
13 N -0.547 5.547
14 C 0.314 3.686
15 N -0.499 5.499
16 C 0.117 3.883
17 H 0.107 0.893
18 C -0.137 4.137
19 C 0.109 3.891
20 N -0.604 5.604
21 C -0.349 4.349
22 H 0.080 0.920
23 C -0.005 4.005
24 N -0.897 5.897
25 Si 1.036 2.964
26 H -0.295 1.295
27 H -0.283 1.283
28 H -0.299 1.299
29 C 0.131 3.869
30 H 0.052 0.948
31 H 0.080 0.920
32 H 0.113 0.887
33 H 0.158 0.842
34 H 0.096 0.904
35 H 0.058 0.942
36 H 0.080 0.920
37 H 0.080 0.920
38 H 0.071 0.929
39 H 0.076 0.924
40 H 0.085 0.915
41 H 0.084 0.916
42 H 0.203 0.797
43 H 0.069 0.931
44 H 0.080 0.920
45 H 0.036 0.964
46 H 0.040 0.960
47 H 0.267 0.733
48 H 0.041 0.959
49 H 0.048 0.952
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.919 24.881 2.381 26.219
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.079 4.079
2 N -0.292 5.292
3 C 0.347 3.653
4 O -0.417 6.417
5 C 0.007 3.993
6 C -0.203 4.203
7 C 0.103 3.897
8 N -0.177 5.177
9 C -0.083 4.083
10 C -0.161 4.161
11 C -0.171 4.171
12 C -0.093 4.093
13 N -0.267 5.267
14 C 0.025 3.975
15 N -0.218 5.218
16 C 0.013 3.987
17 H 0.125 0.875
18 C -0.176 4.176
19 C -0.016 4.016
20 N -0.332 5.332
21 C -0.474 4.474
22 H 0.098 0.902
23 C -0.208 4.208
24 N -0.535 5.535
25 Si 0.868 3.132
26 H -0.223 1.223
27 H -0.211 1.211
28 H -0.227 1.227
29 C 0.004 3.996
30 H 0.071 0.929
31 H 0.098 0.902
32 H 0.131 0.869
33 H 0.176 0.824
34 H 0.114 0.886
35 H 0.077 0.923
36 H 0.099 0.901
37 H 0.099 0.901
38 H 0.090 0.910
39 H 0.095 0.905
40 H 0.103 0.897
41 H 0.103 0.897
42 H 0.219 0.781
43 H 0.088 0.912
44 H 0.099 0.901
45 H 0.054 0.946
46 H 0.058 0.942
47 H 0.077 0.923
48 H 0.058 0.942
49 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges 6.737 24.582 3.910 25.787
hybrid contribution 1.281 0.253 -1.472 1.967
sum 8.018 24.835 2.439 26.211
Atomic orbital electron populations
1.22697 0.76816 1.05937 1.02411 1.47665 1.08759 1.04434 1.68389
1.17850 0.86375 0.82883 0.78233 1.90746 1.13024 1.86645 1.51295
1.21526 0.90115 0.94178 0.93487 1.22334 1.03132 0.90992 1.03803
1.20175 0.87877 0.91176 0.90451 1.61719 1.28774 0.99743 1.27508
1.23392 1.00685 0.97895 0.86356 1.22523 0.98924 0.93379 1.01287
1.22463 0.97739 0.98293 0.98622 1.22954 0.95754 0.89263 1.01285
1.68241 1.09655 1.30839 1.17967 1.24974 1.01000 0.81733 0.89822
1.69059 1.07711 1.30855 1.14150 1.22471 0.96704 0.82428 0.97111
0.87516 1.22926 0.98856 0.98701 0.97098 1.21700 0.95120 0.98453
0.86302 1.44847 1.17804 1.70576 0.99992 1.19840 1.00978 1.35706
0.90889 0.90246 1.25530 0.96661 0.94788 1.03807 1.70878 1.46153
1.15564 1.20874 0.84368 0.75856 0.76145 0.76841 1.22308 1.21054
1.22717 1.21926 0.89880 0.93242 0.94553 0.92942 0.90173 0.86865
0.82411 0.88585 0.92318 0.90146 0.90109 0.90981 0.90507 0.89707
0.89717 0.78072 0.91206 0.90134 0.94638 0.94207 0.92337 0.94179
0.93383
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 1.14 7.40 59.85 0.44 1.58 16
2 N -0.56 -9.84 2.91 -172.23 -0.50 -10.34 16
3 C 0.56 9.48 7.66 -12.06 -0.09 9.38 16
4 O -0.54 -9.89 15.82 5.39 0.09 -9.80 16
5 C 0.15 2.24 6.58 -82.71 -0.54 1.70 16
6 C -0.18 -2.27 9.13 -38.67 -0.35 -2.62 16
7 C 0.34 4.03 6.21 -154.85 -0.96 3.07 16
8 N -0.46 -4.44 5.30 -169.02 -0.90 -5.34 16
9 C 0.04 0.32 6.08 -1.90 -0.01 0.31 16
10 C -0.12 -0.67 7.06 -24.87 -0.18 -0.85 16
11 C -0.13 -0.76 6.93 -25.36 -0.18 -0.93 16
12 C 0.03 0.28 6.37 -2.73 -0.02 0.26 16
13 N -0.55 -6.37 8.28 -13.82 -0.11 -6.48 16
14 C 0.31 3.62 12.27 -92.31 -1.13 2.49 16
15 N -0.50 -6.96 6.37 -11.22 -0.07 -7.03 16
16 C 0.12 2.04 3.67 -65.66 -0.24 1.80 16
17 H 0.11 1.78 7.02 -51.93 -0.36 1.42 16
18 C -0.14 -2.34 6.48 -24.90 -0.16 -2.50 16
19 C 0.11 2.31 3.91 -3.07 -0.01 2.30 16
20 N -0.60 -14.12 1.84 -169.93 -0.31 -14.43 16
21 C -0.35 -9.51 9.88 -15.06 -0.15 -9.66 16
22 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16
23 C 0.00 -0.14 5.39 -17.43 -0.09 -0.23 16
24 N -0.90 -27.18 13.70 55.49 0.76 -26.42 16
25 Si 1.04 25.34 24.84 -169.99 -4.22 21.12 16
26 H -0.30 -7.02 6.90 56.52 0.39 -6.63 16
27 H -0.28 -6.35 6.10 56.52 0.35 -6.01 16
28 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16
29 C 0.13 2.60 6.46 -2.40 -0.02 2.58 16
30 H 0.05 0.93 7.99 -51.93 -0.42 0.51 16
31 H 0.08 1.36 5.75 -51.93 -0.30 1.06 16
32 H 0.11 2.41 4.17 -51.93 -0.22 2.19 16
33 H 0.16 1.92 7.74 -52.48 -0.41 1.51 16
34 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16
35 H 0.06 0.47 7.99 -51.93 -0.42 0.05 16
36 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16
37 H 0.08 0.42 8.14 -51.92 -0.42 -0.01 16
38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16
39 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16
40 H 0.08 0.77 6.53 -51.93 -0.34 0.43 16
41 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16
42 H 0.20 1.66 8.06 -52.49 -0.42 1.24 16
43 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16
44 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16
45 H 0.04 0.79 3.31 -51.93 -0.17 0.61 16
46 H 0.04 0.90 7.49 -51.93 -0.39 0.51 16
47 H 0.27 8.01 8.73 -40.82 -0.36 7.65 16
48 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16
49 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16
LS Contribution 374.93 15.07 5.65 5.65
Total: -1.00 -31.73 374.93 -10.63 -42.36
By element:
Atomic # 1 Polarization: 9.36 SS G_CDS: -7.31 Total: 2.05 kcal
Atomic # 6 Polarization: 12.37 SS G_CDS: -3.69 Total: 8.68 kcal
Atomic # 7 Polarization: -68.91 SS G_CDS: -1.13 Total: -70.04 kcal
Atomic # 8 Polarization: -9.89 SS G_CDS: 0.09 Total: -9.80 kcal
Atomic # 14 Polarization: 25.34 SS G_CDS: -4.22 Total: 21.12 kcal
Total LS contribution 5.65 Total: 5.65 kcal
Total: -31.73 -10.63 -42.36 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001033424424.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 137.696 kcal
(2) G-P(sol) polarization free energy of solvation -31.728 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.968 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.627 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.355 kcal
(6) G-S(sol) free energy of system = (1) + (5) 95.341 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds