Wall clock time and date at job start Wed Apr 1 2020 03:18:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 C 1.34772 * 120.00329 * 2 1
4 4 O 1.21473 * 120.00341 * 185.66206 * 3 2 1
5 5 C 1.48447 * 119.99746 * 5.65529 * 3 2 1
6 6 C 1.39080 * 120.50640 * 186.12940 * 5 3 2
7 7 C 1.39854 * 118.18917 * 180.02562 * 6 5 3
8 8 N 1.38513 * 120.50903 * 179.97438 * 7 6 5
9 9 C 1.48527 * 111.00117 * 62.60248 * 8 7 6
10 10 C 1.54936 * 103.22673 * 159.71513 * 9 8 7
11 11 C 1.54593 * 102.92495 * 322.59112 * 10 9 8
12 12 C 1.47905 * 110.99457 * 180.02562 * 8 7 6
13 13 N 1.32838 * 118.97814 * 359.97438 * 7 6 5
14 14 C 1.31850 * 120.90379 * 0.02562 * 13 7 6
15 15 N 1.31553 * 122.01221 * 359.70752 * 14 13 7
16 16 C 1.46496 * 119.99740 * 179.97438 * 2 1 3
17 17 H 1.09000 * 110.88892 * 176.12028 * 16 2 1
18 18 C 1.55159 * 111.01067 * 300.00476 * 16 2 1
19 19 C 1.54322 * 102.94473 * 82.56897 * 18 16 2
20 20 N 1.47018 * 107.26958 * 22.19410 * 19 18 16
21 21 C 1.36935 * 125.65038 * 181.02054 * 20 19 18
22 22 H 1.07994 * 120.00460 * 176.98588 * 21 20 19
23 23 C 1.38819 * 119.99861 * 356.98513 * 21 20 19
24 24 N 1.31610 * 120.00064 * 216.51440 * 23 21 20
25 25 Si 1.86804 * 119.99532 * 36.79313 * 23 21 20
26 26 H 1.48505 * 109.46673 * 268.07646 * 25 23 21
27 27 H 1.48496 * 109.47247 * 28.07560 * 25 23 21
28 28 H 1.48504 * 109.46840 * 148.08031 * 25 23 21
29 29 C 1.47424 * 108.70664 * 1.29134 * 20 19 18
30 30 H 1.09003 * 109.47235 * 274.95043 * 1 2 3
31 31 H 1.09001 * 109.47242 * 34.94519 * 1 2 3
32 32 H 1.08998 * 109.47745 * 154.94646 * 1 2 3
33 33 H 1.08004 * 120.90657 * 359.97438 * 6 5 3
34 34 H 1.08998 * 110.67074 * 278.15446 * 9 8 7
35 35 H 1.08999 * 110.66795 * 41.28755 * 9 8 7
36 36 H 1.09000 * 110.73111 * 204.22416 * 10 9 8
37 37 H 1.09010 * 110.71920 * 80.94380 * 10 9 8
38 38 H 1.09006 * 110.30397 * 263.03908 * 11 10 9
39 39 H 1.09001 * 110.39565 * 140.91585 * 11 10 9
40 40 H 1.08994 * 109.91763 * 333.50893 * 12 8 7
41 41 H 1.09000 * 109.91755 * 94.60517 * 12 8 7
42 42 H 1.08000 * 118.99049 * 180.02562 * 14 13 7
43 43 H 1.09003 * 110.71506 * 324.21023 * 18 16 2
44 44 H 1.08995 * 110.87492 * 201.00892 * 18 16 2
45 45 H 1.09000 * 109.88037 * 262.77874 * 19 18 16
46 46 H 1.08994 * 110.00876 * 141.68840 * 19 18 16
47 47 H 0.96998 * 120.00521 * 5.29274 * 24 23 21
48 48 H 1.09000 * 110.37187 * 94.47397 * 29 20 19
49 49 H 1.09003 * 110.36774 * 216.80609 * 29 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1389 1.1671 0.0000
4 8 3.3492 1.1697 -0.1038
5 6 1.4021 2.4496 0.1267
6 6 2.0701 3.6630 0.0009
7 6 1.3285 4.8418 0.1295
8 7 1.9452 6.0766 0.0134
9 6 2.5242 6.2572 -1.3424
10 6 2.6751 7.7945 -1.4615
11 6 1.4141 8.3228 -0.7401
12 6 0.9691 7.1746 0.1852
13 7 0.0238 4.7589 0.3646
14 6 -0.5710 3.5875 0.4770
15 7 0.0892 2.4559 0.3576
16 6 2.1974 -1.2687 0.0006
17 1 3.2716 -1.0974 -0.0684
18 6 1.8483 -2.1121 1.2553
19 6 0.5310 -2.8062 0.8496
20 7 0.4792 -2.8197 -0.6196
21 6 -0.5405 -3.3303 -1.3776
22 1 -0.5066 -3.2486 -2.4539
23 6 -1.6180 -3.9531 -0.7625
24 7 -2.1821 -5.0003 -1.3257
25 14 -2.2720 -3.2998 0.8608
26 1 -1.5977 -3.9997 1.9837
27 1 -2.0025 -1.8424 0.9526
28 1 -3.7358 -3.5384 0.9366
29 6 1.7098 -2.1983 -1.1418
30 1 -0.3634 0.0887 1.0238
31 1 -0.3634 0.8424 -0.5886
32 1 -0.3634 -0.9309 -0.4352
33 1 3.1326 3.6941 -0.1900
34 1 3.4958 5.7684 -1.4140
35 1 1.8441 5.8773 -2.1048
36 1 2.6786 8.1020 -2.5073
37 1 3.5793 8.1336 -0.9558
38 1 0.6316 8.5505 -1.4640
39 1 1.6554 9.2092 -0.1534
40 1 -0.0266 6.8339 -0.0984
41 1 0.9655 7.5093 1.2225
42 1 -1.6335 3.5561 0.6679
43 1 1.6942 -1.4688 2.1216
44 1 2.6260 -2.8486 1.4570
45 1 -0.3185 -2.2495 1.2454
46 1 0.5148 -3.8272 1.2306
47 1 -1.7986 -5.3840 -2.1298
48 1 2.4576 -2.9612 -1.3585
49 1 1.4905 -1.6158 -2.0367
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001033424424.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:18:36
Heat of formation + Delta-G solvation = 76.714079 kcal
Electronic energy + Delta-G solvation = -30995.022504 eV
Core-core repulsion = 26959.106525 eV
Total energy + Delta-G solvation = -4035.915978 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.191 amu
Computer time = 1.10 seconds
Orbital eigenvalues (eV)
-42.64689 -41.26006 -39.84951 -39.19292 -36.14948 -35.13576 -34.22242 -33.74041
-31.47539 -31.09810 -30.11709 -29.93217 -27.72052 -26.68756 -25.39088 -25.24597
-23.35637 -22.49228 -22.12820 -21.69070 -20.57365 -19.48449 -19.14867 -18.79229
-17.76708 -17.35786 -16.99307 -16.80137 -16.60683 -16.52699 -16.10302 -15.84034
-15.75894 -15.28117 -15.15521 -14.98001 -14.48026 -14.34639 -14.19688 -13.68434
-13.52838 -13.39491 -13.29802 -13.16641 -13.01854 -12.67598 -12.53976 -12.48183
-12.35815 -12.20964 -11.92159 -11.89162 -11.84181 -11.73689 -11.55917 -11.42280
-11.12714 -11.11174 -10.49916 -10.22041 -9.86613 -9.67311 -9.02999 -8.66467
-5.29528 -0.67655 -0.21600 1.46759 1.51088 1.55053 1.67727 1.72950
2.28294 2.59299 2.64314 2.76699 2.93508 3.03480 3.38214 3.42029
3.60302 3.68438 3.73068 3.78053 3.79336 4.06528 4.09233 4.14566
4.25068 4.35206 4.40825 4.44354 4.45456 4.55162 4.62961 4.78113
4.78790 4.81944 4.86342 4.88558 4.91189 4.93170 4.95167 5.07314
5.11068 5.15645 5.18397 5.35560 5.39479 5.48856 5.63802 5.76816
5.83810 6.11631 6.22650 6.75877 6.84077 6.93465 7.51678 8.18069
8.82375
Molecular weight = 345.19amu
Principal moments of inertia in cm(-1)
A = 0.019882 B = 0.002684 C = 0.002522
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1407.978577 B =10430.034432 C =11099.862667
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.077 3.923
2 N -0.569 5.569
3 C 0.564 3.436
4 O -0.557 6.557
5 C 0.136 3.864
6 C -0.177 4.177
7 C 0.349 3.651
8 N -0.465 5.465
9 C 0.038 3.962
10 C -0.117 4.117
11 C -0.128 4.128
12 C 0.032 3.968
13 N -0.547 5.547
14 C 0.316 3.684
15 N -0.518 5.518
16 C 0.126 3.874
17 H 0.121 0.879
18 C -0.124 4.124
19 C 0.105 3.895
20 N -0.618 5.618
21 C -0.331 4.331
22 H 0.049 0.951
23 C -0.059 4.059
24 N -0.936 5.936
25 Si 1.079 2.921
26 H -0.283 1.283
27 H -0.253 1.253
28 H -0.309 1.309
29 C 0.129 3.871
30 H 0.057 0.943
31 H 0.088 0.912
32 H 0.081 0.919
33 H 0.161 0.839
34 H 0.100 0.900
35 H 0.053 0.947
36 H 0.096 0.904
37 H 0.086 0.914
38 H 0.079 0.921
39 H 0.089 0.911
40 H 0.075 0.925
41 H 0.083 0.917
42 H 0.233 0.767
43 H 0.088 0.912
44 H 0.104 0.896
45 H 0.034 0.966
46 H 0.026 0.974
47 H 0.253 0.747
48 H 0.049 0.951
49 H 0.036 0.964
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.939 27.960 3.869 29.608
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 N -0.299 5.299
3 C 0.351 3.649
4 O -0.435 6.435
5 C -0.008 4.008
6 C -0.203 4.203
7 C 0.106 3.894
8 N -0.184 5.184
9 C -0.087 4.087
10 C -0.155 4.155
11 C -0.166 4.166
12 C -0.095 4.095
13 N -0.267 5.267
14 C 0.028 3.972
15 N -0.237 5.237
16 C 0.022 3.978
17 H 0.139 0.861
18 C -0.162 4.162
19 C -0.019 4.019
20 N -0.345 5.345
21 C -0.458 4.458
22 H 0.067 0.933
23 C -0.256 4.256
24 N -0.577 5.577
25 Si 0.906 3.094
26 H -0.210 1.210
27 H -0.179 1.179
28 H -0.238 1.238
29 C 0.004 3.996
30 H 0.075 0.925
31 H 0.106 0.894
32 H 0.099 0.901
33 H 0.178 0.822
34 H 0.118 0.882
35 H 0.072 0.928
36 H 0.115 0.885
37 H 0.105 0.895
38 H 0.098 0.902
39 H 0.108 0.892
40 H 0.093 0.907
41 H 0.102 0.898
42 H 0.249 0.751
43 H 0.106 0.894
44 H 0.122 0.878
45 H 0.051 0.949
46 H 0.044 0.956
47 H 0.062 0.938
48 H 0.066 0.934
49 H 0.054 0.946
Dipole moment (debyes) X Y Z Total
from point charges 7.803 27.709 5.400 29.289
hybrid contribution 1.044 -0.582 -2.036 2.361
sum 8.847 27.127 3.364 28.731
Atomic orbital electron populations
1.22476 0.77132 1.04426 1.02474 1.47687 1.08549 1.04709 1.68909
1.18106 0.86257 0.83314 0.77272 1.90727 1.13800 1.87033 1.51959
1.21252 0.90722 0.93562 0.95282 1.22349 1.03290 0.90865 1.03839
1.20377 0.87851 0.91688 0.89455 1.61744 1.28829 0.99293 1.28512
1.23521 1.00546 0.99677 0.84983 1.22543 0.99018 0.91505 1.02401
1.22465 0.98006 0.97690 0.98444 1.23023 0.94980 0.89561 1.01894
1.68367 1.09582 1.30772 1.18025 1.25581 1.02072 0.81042 0.88528
1.68960 1.07407 1.32096 1.15228 1.22366 0.97252 0.82139 0.96012
0.86130 1.22904 0.97127 0.98954 0.97223 1.21788 0.97464 0.98085
0.84605 1.44836 1.17770 1.70742 1.01191 1.19672 1.01942 1.34243
0.89968 0.93329 1.26658 0.97408 0.94680 1.06817 1.70992 1.47476
1.17729 1.21532 0.83817 0.74585 0.77398 0.73604 1.20987 1.17872
1.23808 1.22020 0.88693 0.93732 0.95203 0.92475 0.89361 0.90091
0.82166 0.88163 0.92848 0.88511 0.89540 0.90222 0.89220 0.90684
0.89838 0.75081 0.89381 0.87792 0.94857 0.95614 0.93839 0.93353
0.94555
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 2.67 7.40 127.77 0.95 3.61 16
2 N -0.57 -18.98 2.91 -817.12 -2.38 -21.36 16
3 C 0.56 18.22 7.66 86.97 0.67 18.89 16
4 O -0.56 -19.59 15.82 -3.63 -0.06 -19.64 16
5 C 0.14 3.82 6.58 41.84 0.28 4.10 16
6 C -0.18 -4.32 9.13 22.86 0.21 -4.11 16
7 C 0.35 7.58 6.21 133.27 0.83 8.40 16
8 N -0.47 -8.14 5.30 -688.67 -3.65 -11.79 16
9 C 0.04 0.49 6.08 86.65 0.53 1.02 16
10 C -0.12 -0.95 7.06 31.80 0.22 -0.73 16
11 C -0.13 -1.11 6.93 31.48 0.22 -0.89 16
12 C 0.03 0.45 6.37 86.46 0.55 1.00 16
13 N -0.55 -11.69 8.28 -197.65 -1.64 -13.33 16
14 C 0.32 6.63 12.27 180.94 2.22 8.85 16
15 N -0.52 -13.53 6.37 -189.40 -1.21 -14.73 16
16 C 0.13 4.17 3.67 46.47 0.17 4.34 16
17 H 0.12 3.72 7.02 -2.39 -0.02 3.71 16
18 C -0.12 -3.86 6.48 31.78 0.21 -3.66 16
19 C 0.10 4.27 3.91 86.73 0.34 4.61 16
20 N -0.62 -28.76 1.84 -691.55 -1.27 -30.03 16
21 C -0.33 -18.49 9.88 84.04 0.83 -17.66 16
22 H 0.05 2.95 8.06 -2.91 -0.02 2.93 16
23 C -0.06 -3.40 5.39 84.87 0.46 -2.94 16
24 N -0.94 -58.71 13.70 21.65 0.30 -58.41 16
25 Si 1.08 51.41 24.84 68.60 1.70 53.12 16
26 H -0.28 -12.83 6.90 99.48 0.69 -12.15 16
27 H -0.25 -10.70 6.10 99.48 0.61 -10.09 16
28 H -0.31 -15.18 7.11 99.48 0.71 -14.47 16
29 C 0.13 5.07 6.46 86.94 0.56 5.63 16
30 H 0.06 1.89 7.99 -2.39 -0.02 1.88 16
31 H 0.09 2.88 5.75 -2.39 -0.01 2.87 16
32 H 0.08 3.37 4.17 -2.39 -0.01 3.36 16
33 H 0.16 3.73 7.74 -2.91 -0.02 3.70 16
34 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16
35 H 0.05 0.77 7.99 -2.39 -0.02 0.75 16
36 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16
37 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16
38 H 0.08 0.59 8.14 -2.38 -0.02 0.58 16
39 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16
40 H 0.07 1.23 6.53 -2.39 -0.02 1.22 16
41 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16
42 H 0.23 3.16 8.06 -2.91 -0.02 3.14 16
43 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16
44 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16
45 H 0.03 1.40 3.31 -2.39 -0.01 1.39 16
46 H 0.03 1.13 7.49 -2.39 -0.02 1.11 16
47 H 0.25 15.94 8.73 -92.71 -0.81 15.13 16
48 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16
49 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16
Total: -1.00 -69.93 374.93 1.84 -68.10
By element:
Atomic # 1 Polarization: 16.81 SS G_CDS: 0.81 Total: 17.62 kcal
Atomic # 6 Polarization: 21.23 SS G_CDS: 9.23 Total: 30.47 kcal
Atomic # 7 Polarization: -139.81 SS G_CDS: -9.85 Total: -149.65 kcal
Atomic # 8 Polarization: -19.59 SS G_CDS: -0.06 Total: -19.64 kcal
Atomic # 14 Polarization: 51.41 SS G_CDS: 1.70 Total: 53.12 kcal
Total: -69.93 1.84 -68.10 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001033424424.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 144.810 kcal
(2) G-P(sol) polarization free energy of solvation -69.934 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.875 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.839 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.095 kcal
(6) G-S(sol) free energy of system = (1) + (5) 76.714 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.10 seconds