Wall clock time and date at job start Wed Apr 1 2020 03:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34769 * 120.00206 * 2 1 4 4 O 1.21525 * 120.00189 * 180.99404 * 3 2 1 5 5 C 1.48134 * 120.00229 * 0.98879 * 3 2 1 6 6 C 1.39247 * 120.04733 * 172.92548 * 5 3 2 7 7 N 1.32197 * 120.06153 * 179.97438 * 6 5 3 8 8 C 1.31925 * 120.16536 * 0.02562 * 7 6 5 9 9 C 1.39657 * 120.09564 * 0.02562 * 8 7 6 10 10 N 1.38982 * 120.03344 * 179.97438 * 9 8 7 11 11 C 1.48529 * 111.00288 * 178.90830 * 10 9 8 12 12 C 1.54934 * 103.22687 * 159.72158 * 11 10 9 13 13 C 1.54595 * 102.92164 * 322.58482 * 12 11 10 14 14 C 1.47905 * 110.99775 * 296.30744 * 10 9 8 15 15 N 1.32336 * 119.93747 * 0.23844 * 9 8 7 16 16 C 1.46502 * 119.99671 * 180.02562 * 2 1 3 17 17 H 1.08998 * 110.88465 * 183.88498 * 16 2 1 18 18 C 1.55157 * 111.00845 * 59.99753 * 16 2 1 19 19 C 1.54328 * 102.94198 * 277.43039 * 18 16 2 20 20 N 1.47024 * 107.26985 * 337.80443 * 19 18 16 21 21 C 1.36939 * 125.64892 * 178.89855 * 20 19 18 22 22 H 1.07998 * 120.00356 * 180.02562 * 21 20 19 23 23 C 1.38814 * 119.99711 * 0.02562 * 21 20 19 24 24 N 1.31620 * 120.00363 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99904 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47083 * 59.99625 * 25 23 21 27 27 H 1.48494 * 109.47103 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.46928 * 299.99798 * 25 23 21 29 29 C 1.47422 * 108.70599 * 358.94233 * 20 19 18 30 30 H 1.09004 * 109.47142 * 83.90949 * 1 2 3 31 31 H 1.09000 * 109.47354 * 203.90997 * 1 2 3 32 32 H 1.09001 * 109.46918 * 323.91017 * 1 2 3 33 33 H 1.08001 * 119.96871 * 359.95918 * 6 5 3 34 34 H 1.08004 * 119.95013 * 179.97438 * 8 7 6 35 35 H 1.09002 * 110.66922 * 278.15751 * 11 10 9 36 36 H 1.09005 * 110.66347 * 41.28691 * 11 10 9 37 37 H 1.09007 * 110.72352 * 204.22695 * 12 11 10 38 38 H 1.08994 * 110.72447 * 80.94622 * 12 11 10 39 39 H 1.09001 * 110.31191 * 263.03958 * 13 12 11 40 40 H 1.09000 * 110.30557 * 140.87303 * 13 12 11 41 41 H 1.09000 * 109.91947 * 333.50521 * 14 10 9 42 42 H 1.09000 * 109.92092 * 94.60531 * 14 10 9 43 43 H 1.09000 * 110.71780 * 35.78929 * 18 16 2 44 44 H 1.08996 * 110.72016 * 159.06555 * 18 16 2 45 45 H 1.08997 * 109.88614 * 97.22291 * 19 18 16 46 46 H 1.09003 * 109.88055 * 218.23539 * 19 18 16 47 47 H 0.96990 * 120.00524 * 180.02562 * 24 23 21 48 48 H 1.09004 * 110.36694 * 265.29265 * 29 20 19 49 49 H 1.09000 * 110.36730 * 142.96672 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3540 1.1672 -0.0183 5 6 1.3985 2.4500 0.0221 6 6 2.0881 3.6505 0.1707 7 7 1.4277 4.7955 0.1899 8 6 0.1140 4.8052 0.0692 9 6 -0.5845 3.6050 -0.0790 10 7 -1.9685 3.6167 -0.2056 11 6 -2.4990 2.2401 -0.3773 12 6 -3.9885 2.3814 0.0249 13 6 -3.9358 3.3864 1.1985 14 6 -2.6082 4.1456 1.0185 15 7 0.0722 2.4562 -0.0936 16 6 2.1975 -1.2688 -0.0006 17 1 3.2717 -1.0974 0.0685 18 6 1.8483 -2.1121 -1.2553 19 6 0.5309 -2.8061 -0.8496 20 7 0.4792 -2.8197 0.6196 21 6 -0.5413 -3.3290 1.3776 22 1 -0.4845 -3.2906 2.4554 23 6 -1.6487 -3.8945 0.7606 24 7 -1.7176 -3.9418 -0.5530 25 14 -3.0411 -4.5886 1.7945 26 1 -3.6133 -3.5113 2.6413 27 1 -4.0975 -5.1303 0.9025 28 1 -2.5194 -5.6755 2.6617 29 6 1.7073 -2.1933 1.1418 30 1 -0.3634 0.1090 -1.0219 31 1 -0.3634 -0.9395 0.4165 32 1 -0.3633 0.8305 0.6054 33 1 3.1635 3.6462 0.2704 34 1 -0.4221 5.7427 0.0858 35 1 -2.4096 1.9200 -1.4155 36 1 -1.9856 1.5444 0.2865 37 1 -4.3915 1.4238 0.3549 38 1 -4.5747 2.7836 -0.8013 39 1 -3.9424 2.8565 2.1510 40 1 -4.7772 4.0771 1.1431 41 1 -1.9622 3.9732 1.8793 42 1 -2.7997 5.2128 0.9061 43 1 1.6943 -1.4688 -2.1216 44 1 2.6269 -2.8485 -1.4539 45 1 -0.3185 -2.2495 -1.2453 46 1 0.5163 -3.8265 -1.2328 47 1 -2.4915 -4.3366 -0.9841 48 1 2.4567 -2.9536 1.3624 49 1 1.4849 -1.6084 2.0343 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033475375.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:40 Heat of formation + Delta-G solvation = 90.688350 kcal Electronic energy + Delta-G solvation = -32030.277073 eV Core-core repulsion = 27994.967065 eV Total energy + Delta-G solvation = -4035.310008 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.68915 -39.73489 -38.80764 -37.43301 -34.95811 -33.96336 -33.04377 -31.97532 -29.62202 -29.31931 -29.30130 -27.86896 -26.30945 -25.33536 -24.40961 -24.10673 -21.92809 -21.24550 -20.73878 -20.11879 -19.05419 -18.00747 -17.34620 -17.02413 -16.88106 -16.55701 -16.15043 -15.89262 -15.45489 -14.70026 -14.42780 -14.17517 -14.15176 -13.82208 -13.53818 -13.26872 -12.94138 -12.77714 -12.72291 -12.63911 -12.36155 -11.98722 -11.87097 -11.70347 -11.62981 -11.40819 -11.24163 -11.06494 -10.98917 -10.84075 -10.77551 -10.70295 -10.35012 -10.21635 -10.07485 -10.02257 -9.92926 -9.70272 -8.92748 -8.72681 -8.59261 -8.17330 -6.87437 -5.79468 -3.14189 0.30567 0.87473 2.74200 3.08960 3.27420 3.33588 3.39449 3.39965 3.65210 3.95011 4.09503 4.27529 4.39219 4.42092 4.53417 4.70418 4.83231 5.01363 5.08552 5.15500 5.25111 5.33462 5.40450 5.41567 5.45699 5.59472 5.64538 5.67079 5.78963 5.83527 5.86121 5.89904 5.99002 6.04984 6.22581 6.26389 6.31081 6.35028 6.49930 6.53337 6.61527 6.68266 6.92834 6.98763 7.12593 7.48877 7.52440 7.55234 7.74014 7.76514 8.15920 8.30009 9.13118 9.72451 10.37875 11.31185 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.009415 B = 0.004576 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2973.112077 B = 6117.891199 C = 8495.409112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.560 5.560 3 C 0.563 3.437 4 O -0.545 6.545 5 C 0.067 3.933 6 C 0.075 3.925 7 N -0.424 5.424 8 C 0.065 3.935 9 C 0.248 3.752 10 N -0.456 5.456 11 C 0.037 3.963 12 C -0.127 4.127 13 C -0.130 4.130 14 C 0.042 3.958 15 N -0.433 5.433 16 C 0.119 3.881 17 H 0.101 0.899 18 C -0.154 4.154 19 C 0.174 3.826 20 N -0.601 5.601 21 C -0.233 4.233 22 H 0.077 0.923 23 C -0.002 4.002 24 N -0.918 5.918 25 Si 0.909 3.091 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.285 1.285 29 C 0.126 3.874 30 H 0.047 0.953 31 H 0.120 0.880 32 H 0.083 0.917 33 H 0.181 0.819 34 H 0.172 0.828 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.053 0.947 42 H 0.090 0.910 43 H 0.062 0.938 44 H 0.069 0.931 45 H 0.051 0.949 46 H 0.043 0.957 47 H 0.254 0.746 48 H 0.034 0.966 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.322 16.234 1.026 16.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.289 5.289 3 C 0.348 3.652 4 O -0.424 6.424 5 C -0.075 4.075 6 C -0.084 4.084 7 N -0.137 5.137 8 C -0.101 4.101 9 C 0.011 3.989 10 N -0.175 5.175 11 C -0.089 4.089 12 C -0.165 4.165 13 C -0.168 4.168 14 C -0.084 4.084 15 N -0.156 5.156 16 C 0.015 3.985 17 H 0.119 0.881 18 C -0.194 4.194 19 C 0.050 3.950 20 N -0.328 5.328 21 C -0.361 4.361 22 H 0.095 0.905 23 C -0.199 4.199 24 N -0.565 5.565 25 Si 0.740 3.260 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.212 1.212 29 C -0.001 4.001 30 H 0.066 0.934 31 H 0.138 0.862 32 H 0.101 0.899 33 H 0.198 0.802 34 H 0.190 0.810 35 H 0.109 0.891 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.072 0.928 42 H 0.108 0.892 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.070 0.930 46 H 0.061 0.939 47 H 0.064 0.936 48 H 0.051 0.949 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.044 16.384 0.536 16.426 hybrid contribution -0.727 -0.861 0.874 1.426 sum -1.771 15.524 1.411 15.688 Atomic orbital electron populations 1.22883 0.77144 1.06388 1.02028 1.47675 1.08670 1.04503 1.68043 1.17752 0.86461 0.82816 0.78193 1.90754 1.12560 1.86738 1.52303 1.22166 0.89919 0.96129 0.99292 1.23604 1.02223 0.86910 0.95667 1.68521 1.07954 1.28524 1.08691 1.23550 0.90627 0.98255 0.97625 1.21320 0.92327 0.90407 0.94828 1.62067 0.99663 1.22392 1.33346 1.23441 0.94188 0.87556 1.03763 1.22555 0.96145 0.99834 0.98000 1.22419 0.96473 0.98352 0.99583 1.22983 0.95519 1.00595 0.89254 1.69183 1.08104 1.26753 1.11542 1.22384 0.96243 0.82314 0.97576 0.88066 1.23248 1.00975 0.98616 0.96520 1.21234 0.91605 0.98489 0.83666 1.44590 1.17230 1.69123 1.01863 1.18973 0.95175 1.32276 0.89715 0.90538 1.24767 0.98422 1.00953 0.95771 1.69950 1.30089 1.49639 1.06819 0.86250 0.81843 0.78966 0.78982 1.21199 1.21576 1.21197 1.21891 0.90236 0.93433 0.94512 0.93420 0.86187 0.89897 0.80180 0.81048 0.89108 0.90039 0.89902 0.90580 0.90782 0.90440 0.92799 0.89214 0.91901 0.91218 0.93047 0.93881 0.93608 0.94871 0.93807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.05 7.05 59.85 0.42 1.47 16 2 N -0.56 -10.09 2.91 -172.47 -0.50 -10.59 16 3 C 0.56 9.82 7.66 -12.20 -0.09 9.73 16 4 O -0.54 -10.32 15.74 5.34 0.08 -10.23 16 5 C 0.07 1.02 6.61 -82.86 -0.55 0.47 16 6 C 0.08 1.02 10.76 -17.02 -0.18 0.84 16 7 N -0.42 -5.40 10.48 -12.54 -0.13 -5.53 16 8 C 0.07 0.73 10.65 -16.98 -0.18 0.55 16 9 C 0.25 3.10 6.04 -154.90 -0.94 2.16 16 10 N -0.46 -5.02 5.30 -169.09 -0.90 -5.92 16 11 C 0.04 0.44 5.99 -1.90 -0.01 0.43 16 12 C -0.13 -1.22 7.06 -24.87 -0.18 -1.40 16 13 C -0.13 -1.05 6.93 -25.38 -0.18 -1.23 16 14 C 0.04 0.36 6.24 -2.75 -0.02 0.35 16 15 N -0.43 -6.30 4.82 -8.81 -0.04 -6.35 16 16 C 0.12 2.19 3.66 -65.78 -0.24 1.94 16 17 H 0.10 1.81 7.02 -51.93 -0.36 1.44 16 18 C -0.15 -2.89 6.48 -24.89 -0.16 -3.05 16 19 C 0.17 3.99 4.31 -3.06 -0.01 3.97 16 20 N -0.60 -14.19 1.87 -170.06 -0.32 -14.51 16 21 C -0.23 -6.05 9.81 -15.06 -0.15 -6.19 16 22 H 0.08 1.94 7.83 -52.49 -0.41 1.53 16 23 C 0.00 -0.06 5.49 -17.43 -0.10 -0.16 16 24 N -0.92 -25.21 10.31 55.49 0.57 -24.64 16 25 Si 0.91 20.94 29.55 -169.99 -5.02 15.92 16 26 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 28 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 29 C 0.13 2.54 6.44 -2.53 -0.02 2.52 16 30 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 31 H 0.12 2.59 4.35 -51.93 -0.23 2.36 16 32 H 0.08 1.42 3.82 -51.93 -0.20 1.22 16 33 H 0.18 2.24 7.65 -52.49 -0.40 1.84 16 34 H 0.17 1.40 8.06 -52.48 -0.42 0.98 16 35 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.08 1.13 5.10 -51.93 -0.26 0.86 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.05 0.49 7.75 -51.93 -0.40 0.09 16 42 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.05 1.28 6.43 -51.93 -0.33 0.94 16 46 H 0.04 1.11 7.51 -51.93 -0.39 0.72 16 47 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 48 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 376.86 15.07 5.68 5.68 Total: -1.00 -29.07 376.86 -10.35 -39.43 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -7.20 Total: 4.35 kcal Atomic # 6 Polarization: 14.97 SS G_CDS: -2.57 Total: 12.40 kcal Atomic # 7 Polarization: -66.22 SS G_CDS: -1.32 Total: -67.54 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.08 Total: -10.23 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.07 -10.35 -39.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033475375.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.114 kcal (2) G-P(sol) polarization free energy of solvation -29.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds